Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g070040.1 Solanum lycopersicum HOM05D004305 ORTHO05D005159 4.2e-179 631.3 342 100.0
Sopen02g019200 Solanum pennellii HOM05D004305 ORTHO05D005159 8.0e-170 600.5 342 96.2
PGSC0003DMG400021114 Solanum tuberosum HOM05D004305 ORTHO05D005159 4.1e-142 508.4 346 83.8
Nitab4.5_0001583g0210 Nicotiana tabacum HOM05D004305 ORTHO05D005159 1.0e-47 194.9 224 55.4
PGSC0003DMG400021011 Solanum tuberosum HOM05D004305 ORTHO05D005159 3.7e-42 176.4 420 38.3
Peaxi162Scf00395g00054 Petunia axillaris HOM05D004305 ORTHO05D005159 7.0e-41 172.2 410 38.0
Solyc02g022920.1 Solanum lycopersicum HOM05D004305 ORTHO05D005159 1.1e-36 158.3 402 35.8
Nitab4.5_0000076g0140 Nicotiana tabacum HOM05D004305 ORTHO05D005159 1.3e-31 141.4 406 35.5
Sopen02g006550 Solanum pennellii HOM05D004305 ORTHO05D005159 2.5e-30 137.1 389 36.5
Nitab4.5_0004204g0010 Nicotiana tabacum HOM05D004305 ORTHO05D005159 3.6e-29 133.3 407 34.2
Dinv06927 Davidia involucrata HOM05D004305 ORTHO05D005159 2.1e-24 117.5 249 37.8
Cc09_g07570 Coffea canephora HOM05D004305 ORTHO05D005159 7.8e-24 115.5 442 28.1
MSTRG.7546 Avicennia marina HOM05D004305 ORTHO05D005159 6.6e-23 112.5 461 28.4
Oeu040075.1 Olea europaea HOM05D004305 ORTHO05D005159 1.1e-22 111.7 197 41.1
Oeu060316.1 Olea europaea HOM05D004305 ORTHO05D005159 2.5e-22 110.5 457 29.8
Oeu015165.2 Olea europaea HOM05D004305 ORTHO05D005159 1.6e-21 107.8 450 29.1
Oeu041117.1 Olea europaea HOM05D004305 ORTHO05D005159 3.6e-21 106.7 438 29.7
Migut.M01906 Erythranthe guttata HOM05D004305 ORTHO05D005159 1.4e-20 104.8 451 29.5
Lj1P1160T59 Lonicera japonica HOM05D004305 ORTHO05D005159 1.4e-20 104.8 451 30.6
Duzib235G0167 Durio zibethinus HOM05D004305 ORTHO05D005159 5.2e-20 102.8 369 30.1
Actinidia13459 Actinidia chinensis HOM05D004305 ORTHO05D005159 6.8e-20 102.4 242 35.1
SGA_v2.0_scaffold223G42870 Striga asiatica HOM05D004305 ORTHO05D005159 8.9e-20 102.1 384 30.5
SGA_v2.0_scaffold1G00275 Striga asiatica HOM05D004305 ORTHO05D005159 3.4e-19 100.1 422 31.3
CSS0026993 Camellia sinensis var. sinensis HOM05D004305 ORTHO05D005159 1.3e-18 98.2 481 29.1
unitig_748.g8282 Utricularia gibba HOM05D004305 ORTHO05D005159 1.3e-18 98.2 374 29.7
Rhsim02G0163100 Rhododendron simsii HOM05D004305 ORTHO05D005159 2.2e-18 97.4 241 38.2
Ciclev10015182m.g Citrus clementina HOM05D004305 ORTHO05D005159 2.9e-18 97.1 449 26.7
Cpa.g.c43226 Carica papaya HOM05D004305 ORTHO05D005159 3.8e-18 96.7 430 27.9
MSTRG.16299 Avicennia marina HOM05D004305 ORTHO05D005159 4.6e-16 89.7 467 28.5
HanXRQChr08g0237311 Helianthus annuus HOM05D004305 ORTHO05D005159 1.7e-15 87.8 411 27.7
Lalb_Chr18g0058121 Lupinus albus HOM05D004305 ORTHO05D005159 1.7e-15 87.8 391 29.4
Atru.chr10.781 Acer truncatum HOM05D004305 ORTHO05D005159 2.3e-15 87.4 397 29.0
CANSAT35G0942 Cannabis sativa HOM05D004305 ORTHO05D005159 2.3e-15 87.4 469 28.4
AT4G20880 Arabidopsis thaliana HOM05D004305 ORTHO05D005159 3.0e-15 87.0 414 26.3
Lsat_1_v5_gn_9_25860 Lactuca sativa HOM05D004305 ORTHO05D005159 3.0e-15 87.0 413 28.6
unitig_748.g7348 Utricularia gibba HOM05D004305 ORTHO05D005159 2.5e-14 84.0 358 30.4
Prupe.4G095400 Prunus persica HOM05D004305 ORTHO05D005159 5.6e-14 82.8 179 38.5
Actinidia31373 Actinidia chinensis HOM05D004305 ORTHO05D005159 2.1e-13 80.9 296 32.8
Thecc.06G003200 Theobroma cacao HOM05D004305 ORTHO05D005159 2.1e-13 80.9 411 25.5
DCAR_003840 Daucus carota HOM05D004305 ORTHO05D005159 4.7e-13 79.7 399 27.8
BcaNung07356 Brassica carinata HOM05D004305 ORTHO05D005159 6.2e-13 79.3 388 26.0
unitig_32.g10874 Utricularia gibba HOM05D004305 ORTHO05D005159 6.2e-13 79.3 367 27.2
Eucgr.D00100 Eucalyptus grandis HOM05D004305 ORTHO05D005159 8.1e-13 79.0 217 32.7
Manes.14G124700 Manihot esculenta HOM05D004305 ORTHO05D005159 8.1e-13 79.0 230 33.9
MD05G1269300 Malus domestica HOM05D004305 ORTHO05D005159 1.4e-12 78.2 183 35.5
Duzib192G0088 Durio zibethinus HOM05D004305 ORTHO05D005159 2.4e-12 77.4 276 31.5
Phvul.006G126000 Phaseolus vulgaris HOM05D004305 ORTHO05D005159 3.1e-12 77.0 373 26.3
Gohir.D06G124500 Gossypium hirsutum HOM05D004305 ORTHO05D005159 4.0e-12 76.6 344 29.1
MD10G1248100 Malus domestica HOM05D004305 ORTHO05D005159 4.0e-12 76.6 236 32.2
Gorai.010G144500 Gossypium raimondii HOM05D004305 ORTHO05D005159 5.3e-12 76.3 333 30.3
GSVIVG01021709001 Vitis vinifera HOM05D004305 ORTHO05D005159 6.9e-12 75.9 440 25.0
RcHm_v2.0_Chr5g0017411 Rosa chinensis HOM05D004305 ORTHO05D005159 9.0e-12 75.5 449 28.1
TWI15G0126 Tripterygium wilfordii HOM05D004305 ORTHO05D005159 1.5e-11 74.7 417 26.6
VMungo0540G0062 Vigna mungo HOM05D004305 ORTHO05D005159 1.5e-11 74.7 372 25.5
BcaB03g11678 Brassica carinata HOM05D004305 ORTHO05D005159 2.6e-11 73.9 402 27.4
A03p52530 Brassica napus HOM05D004305 ORTHO05D005159 2.6e-11 73.9 381 26.8
Gohir.A06G119900 Gossypium hirsutum HOM05D004305 ORTHO05D005159 4.4e-11 73.2 336 31.0
Lj4g0027556 Lotus japonicus HOM05D004305 ORTHO05D005159 4.4e-11 73.2 427 29.5
unitig_32.g11679 Utricularia gibba HOM05D004305 ORTHO05D005159 4.4e-11 73.2 131 40.5
ClCG03G008260 Citrullus lanatus HOM05D004305 ORTHO05D005159 5.8e-11 72.8 445 27.4
Sabra11G0141400 Salix brachista HOM05D004305 ORTHO05D005159 5.8e-11 72.8 322 31.1
COL.COLO4_26846 Corchorus olitorius HOM05D004305 ORTHO05D005159 7.6e-11 72.4 343 27.1
Psat1g165840 Pisum sativum HOM05D004305 ORTHO05D005159 7.6e-11 72.4 369 28.7
BraA03t14328Z Brassica rapa HOM05D004305 ORTHO05D005159 9.9e-11 72.0 381 27.8
Manes.06G058700 Manihot esculenta HOM05D004305 ORTHO05D005159 9.9e-11 72.0 187 34.8
CsaV3_1G037140 Cucumis sativus L. HOM05D004305 ORTHO05D005159 2.2e-10 70.9 422 25.4
ClCG01G025280 Citrullus lanatus HOM05D004305 ORTHO05D005159 2.9e-10 70.5 421 25.7
Glyma.15G132400 Glycine max HOM05D004305 ORTHO05D005159 2.9e-10 70.5 376 26.9
Sc03g0008520 Simmondsia chinensis HOM05D004305 ORTHO05D005159 2.9e-10 70.5 193 36.8
MBI02_g39880_MAGBIO Magnolia biondii HOM05D004305 ORTHO05D005159 6.4e-10 69.3 151 33.8
Potri.001G464300 Populus trichocarpa HOM05D004305 ORTHO05D005159 1.1e-09 68.6 338 29.0
BolC3t20584H Brassica oleracea HOM05D004305 ORTHO05D005159 1.9e-09 67.8 369 25.2
CiPaw.09G142800 Carya illinoinensis HOM05D004305 ORTHO05D005159 2.4e-09 67.4 167 32.9
AL7G33270 Arabidopsis lyrata HOM05D004305 ORTHO05D005159 3.2e-09 67.0 410 25.1
BcaC01g00679 Brassica carinata HOM05D004305 ORTHO05D005159 4.2e-09 66.6 369 24.9
BcaNung05413 Brassica carinata HOM05D004305 ORTHO05D005159 4.2e-09 66.6 379 25.1
C03p83040 Brassica napus HOM05D004305 ORTHO05D005159 4.2e-09 66.6 369 24.9
C07p50970 Brassica napus HOM05D004305 ORTHO05D005159 4.2e-09 66.6 395 24.8
Lj6g0010125 Lotus japonicus HOM05D004305 ORTHO05D005159 4.2e-09 66.6 389 28.8
Cfa000806 Carpinus fangiana HOM05D004305 ORTHO05D005159 5.4e-09 66.2 419 26.0
FvH4_3g10700 Fragaria vesca HOM05D004305 ORTHO05D005159 5.4e-09 66.2 430 27.4
BolC7t45599H Brassica oleracea HOM05D004305 ORTHO05D005159 1.2e-08 65.1 371 25.1
MELO3C002832.2 Cucumis melo HOM05D004305 ORTHO05D005159 1.2e-08 65.1 428 26.4
Potri.011G162400 Populus trichocarpa HOM05D004305 ORTHO05D005159 1.2e-08 65.1 339 28.9
TWI38G0672 Tripterygium wilfordii HOM05D004305 ORTHO05D005159 1.2e-08 65.1 428 25.5
A08p14960 Brassica napus HOM05D004305 ORTHO05D005159 2.1e-08 64.3 367 24.8
BraA08t33477Z Brassica rapa HOM05D004305 ORTHO05D005159 2.1e-08 64.3 367 24.8
CARHR227440 Cardamine hirsuta HOM05D004305 ORTHO05D005159 2.1e-08 64.3 292 27.1
THA.LOC104806249 Tarenaya hassleriana HOM05D004305 ORTHO05D005159 2.1e-08 64.3 418 25.1
A01p12300 Brassica napus HOM05D004305 ORTHO05D005159 2.7e-08 63.9 406 25.1
BcaNung04140 Brassica carinata HOM05D004305 ORTHO05D005159 4.6e-08 63.2 422 26.3
Carub.0007s2055 Capsella rubella HOM05D004305 ORTHO05D005159 4.6e-08 63.2 423 24.8
FAN16G1832 Fragaria x ananassa HOM05D004305 ORTHO05D005159 4.6e-08 63.2 428 27.3
Sabra16G0313900 Salix brachista HOM05D004305 ORTHO05D005159 4.6e-08 63.2 338 28.4
C01p14710 Brassica napus HOM05D004305 ORTHO05D005159 1.0e-07 62.0 417 24.2
BolC1t01423H Brassica oleracea HOM05D004305 ORTHO05D005159 1.0e-07 62.0 417 24.2
Psat7g094000 Pisum sativum HOM05D004305 ORTHO05D005159 1.0e-07 62.0 381 24.7
MELO3C007060.2 Cucumis melo HOM05D004305 ORTHO05D005159 1.3e-07 61.6 431 26.5
Glyma.09G026200 Glycine max HOM05D004305 ORTHO05D005159 1.3e-07 61.6 381 26.0
Medtr2g031350 Medicago truncatula HOM05D004305 ORTHO05D005159 1.3e-07 61.6 391 26.3
Aa31LG6G2950 Aethionema arabicum HOM05D004305 ORTHO05D005159 1.7e-07 61.2 426 24.9
BraA01t01174Z Brassica rapa HOM05D004305 ORTHO05D005159 1.7e-07 61.2 399 25.1
Sp2g09190 Schrenkiella parvula HOM05D004305 ORTHO05D005159 1.7e-07 61.2 340 29.1
CDE02G2479 Ceratophyllum demersum HOM05D006189 ORTHO05D007765 2.3e-07 60.8 156 33.3
Haze_05867 Corylus avellana HOM05D004305 ORTHO05D005159 2.3e-07 60.8 421 25.9
Thhalv10025304m.g Eutrema salsugineum HOM05D004305 ORTHO05D005159 2.3e-07 60.8 437 24.7
FAN21G2878 Fragaria x ananassa HOM05D004305 ORTHO05D005159 3.0e-07 60.5 419 27.7
Sabra16G0315300 Salix brachista HOM05D004305 ORTHO05D005159 3.0e-07 60.5 338 27.5
EL10Ac4g07786 Beta vulgaris HOM05D023924 ORTHO05D023401 3.9e-07 60.1 197 33.0
CARHR178780 Cardamine hirsuta HOM05D004305 ORTHO05D005159 5.1e-07 59.7 349 27.5
Ca_00869_v3 Cicer arietinum L. HOM05D004305 ORTHO05D005159 6.6e-07 59.3 402 26.9
FAN25G2552 Fragaria x ananassa HOM05D004305 ORTHO05D005159 8.7e-07 58.9 175 34.9
FAN11G3528 Fragaria x ananassa HOM05D004305 ORTHO05D005159 1.1e-06 58.5 435 27.1
BcaB07g30950 Brassica carinata HOM05D004305 ORTHO05D005159 1.5e-06 58.2 337 27.3
Actinidia32347 Actinidia chinensis HOM05D004305 ORTHO05D005159 1.9e-06 57.8 396 25.5
SHI24805 Sapria himalayana HOM05D004305 ORTHO05D005159 1.9e-06 57.8 69 44.9
BraA09t37708Z Brassica rapa HOM05D004305 ORTHO05D005159 2.5e-06 57.4 339 27.4
CsaV3_6G052500 Cucumis sativus L. HOM05D004305 ORTHO05D005159 2.5e-06 57.4 426 26.1
Sp7g18970 Schrenkiella parvula HOM05D004305 ORTHO05D005159 2.5e-06 57.4 274 26.6
BcaC06g31624 Brassica carinata HOM05D004305 ORTHO05D005159 3.3e-06 57.0 328 26.8
AL8G15540 Arabidopsis lyrata HOM05D004305 ORTHO05D005159 4.3e-06 56.6 337 26.1
BcaB07g30530 Brassica carinata HOM05D004305 ORTHO05D005159 5.6e-06 56.2 338 27.2
AT5G44350 Arabidopsis thaliana HOM05D004305 ORTHO05D005159 7.3e-06 55.8 343 28.9
BcaC09g51296 Brassica carinata HOM05D004305 ORTHO05D005159 7.3e-06 55.8 410 24.4
A09p21070 Brassica napus HOM05D004305 ORTHO05D005159 7.3e-06 55.8 332 27.1
PSO675G0053 Papaver somniferum HOM05D004305 ORTHO05D005159 7.3e-06 55.8 279 24.0


User provided reference genes

Program Settings