Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g069550.1 Solanum lycopersicum HOM05D007837 ORTHO05D009965 0.0e+00 1079.7 721 100.0
Sopen02g018680 Solanum pennellii HOM05D007837 ORTHO05D009965 1.9e-298 1028.9 716 97.6
Nitab4.5_0001219g0090 Nicotiana tabacum HOM05D007837 ORTHO05D009965 1.1e-240 837.0 722 72.2
Nitab4.5_0011721g0030 Nicotiana tabacum HOM05D007837 ORTHO05D009965 1.4e-237 826.6 745 68.1
Peaxi162Scf00195g00413 Petunia axillaris HOM05D007837 ORTHO05D009965 2.8e-233 812.4 715 70.2
Lj1A1155T50 Lonicera japonica HOM05D007837 ORTHO05D009965 3.1e-155 553.1 710 45.8
CSS0012057 Camellia sinensis var. sinensis HOM05D007837 ORTHO05D009965 2.0e-154 550.4 713 45.3
Actinidia33640 Actinidia chinensis HOM05D007837 ORTHO05D009965 2.1e-151 540.4 713 45.0
Dinv06743 Davidia involucrata HOM05D007837 ORTHO05D009965 6.7e-150 535.4 702 45.3
Dinv15942 Davidia involucrata HOM05D007837 ORTHO05D009965 6.9e-147 525.4 713 44.2
Migut.M01930 Erythranthe guttata HOM05D007837 ORTHO05D009965 3.8e-145 519.6 713 44.3
TWI15G0587 Tripterygium wilfordii HOM05D007837 ORTHO05D009965 1.5e-141 507.7 708 43.1
Manes.16G061400 Manihot esculenta HOM05D007837 ORTHO05D009965 9.6e-141 505.0 728 42.9
DCAR_001340 Daucus carota HOM05D007837 ORTHO05D009965 7.6e-138 495.4 708 42.4
Atru.chr10.652 Acer truncatum HOM05D007837 ORTHO05D009965 1.0e-137 495.0 711 42.6
SalBow8G2294 Salvia bowleyana HOM05D007837 ORTHO05D009965 2.2e-137 493.8 712 42.0
SalBow8G2521 Salvia bowleyana HOM05D007837 ORTHO05D009965 2.2e-137 493.8 712 42.0
Oeu008970.1 Olea europaea HOM05D007837 ORTHO05D009965 1.2e-135 488.0 431 57.3
Duzib160G0902 Durio zibethinus HOM05D007837 ORTHO05D009965 3.6e-135 486.5 714 41.9
Potri.011G153800 Populus trichocarpa HOM05D007837 ORTHO05D009965 5.1e-134 482.6 717 42.0
Cc09_g07320 Coffea canephora HOM05D007837 ORTHO05D009965 8.7e-134 481.9 608 46.7
Gorai.009G117500 Gossypium raimondii HOM05D007837 ORTHO05D009965 6.3e-132 475.7 709 41.2
Thecc.06G015600 Theobroma cacao HOM05D007837 ORTHO05D009965 2.4e-131 473.8 694 41.5
Gohir.D05G113500 Gossypium hirsutum HOM05D007837 ORTHO05D009965 3.1e-131 473.4 708 40.5
MD05G1261900 Malus domestica HOM05D007837 ORTHO05D009965 2.2e-129 467.2 712 40.2
Prupe.4G103700 Prunus persica HOM05D007837 ORTHO05D009965 2.2e-129 467.2 711 40.5
Ciclev10017939m.g Citrus clementina HOM05D007837 ORTHO05D009965 2.9e-129 466.8 577 47.0
FAN21G3089 Fragaria x ananassa HOM05D007837 ORTHO05D009965 2.9e-129 466.8 713 40.7
Gohir.A05G113000 Gossypium hirsutum HOM05D007837 ORTHO05D009965 3.8e-129 466.5 706 40.5
FvH4_3g11620 Fragaria vesca HOM05D007837 ORTHO05D009965 4.2e-128 463.0 730 40.0
PGR042G0413 Punica granatum HOM05D007837 ORTHO05D009965 4.2e-128 463.0 712 40.2
MD10G1240200 Malus domestica HOM05D007837 ORTHO05D009965 1.4e-126 458.0 710 40.1
PSO675G4978 Papaver somniferum HOM05D007837 ORTHO05D009965 1.4e-126 458.0 713 40.8
FAN25G3065 Fragaria x ananassa HOM05D007837 ORTHO05D009965 8.8e-126 455.3 722 40.3
RcHm_v2.0_Chr5g0018641 Rosa chinensis HOM05D007837 ORTHO05D009965 4.4e-125 453.0 729 39.6
PSO541G2349 Papaver somniferum HOM05D007837 ORTHO05D009965 9.7e-125 451.8 708 40.4
COL.COLO4_22875 Corchorus olitorius HOM05D007837 ORTHO05D009965 1.4e-123 448.0 711 40.2
FAN16G2143 Fragaria x ananassa HOM05D007837 ORTHO05D009965 6.5e-121 439.1 743 38.9
Aqoxy3G03542 Aquilegia oxysepala HOM05D007837 ORTHO05D009965 1.4e-118 431.4 582 44.2
TAR626G0822 Trochodendron aralioides HOM05D007837 ORTHO05D009965 3.0e-118 430.3 429 52.9
CANSAT35G1648 Cannabis sativa HOM05D007837 ORTHO05D009965 1.6e-114 417.9 727 38.4
QL05p065337 Quercus lobata HOM05D007837 ORTHO05D009965 1.6e-114 417.9 737 37.9
Sed0012016 Sechium edule HOM05D007837 ORTHO05D009965 4.7e-111 406.4 666 39.5
Lj3g0012849 Lotus japonicus HOM05D007837 ORTHO05D009965 2.3e-110 404.1 590 41.0
ClCG01G025810 Citrullus lanatus HOM05D007837 ORTHO05D009965 3.0e-110 403.7 705 38.6
Glyma.12G002600 Glycine max HOM05D007837 ORTHO05D009965 7.5e-109 399.1 718 37.2
Cpa.g.sc192.12 Carica papaya HOM05D007837 ORTHO05D009965 5.0e-105 386.3 428 49.8
CsaV3_6G053020 Cucumis sativus L. HOM05D007837 ORTHO05D009965 2.5e-104 384.0 435 49.0
MELO3C007007.2 Cucumis melo HOM05D007837 ORTHO05D009965 1.6e-103 381.3 422 50.2
Phvul.011G003300 Phaseolus vulgaris HOM05D007837 ORTHO05D009965 5.0e-97 359.8 647 36.5
ATR1098G128 Amborella trichopoda HOM05D007837 ORTHO05D009965 1.1e-96 358.6 566 39.6
MBI18_g28215_MAGBIO Magnolia biondii HOM05D007837 ORTHO05D009965 7.2e-96 355.9 657 37.1
Lsat_1_v5_gn_1_90680 Lactuca sativa HOM05D007837 ORTHO05D001664 4.4e-85 320.1 440 42.7
VMungo1127G0844 Vigna mungo HOM05D007837 ORTHO05D009965 1.8e-83 314.7 567 35.3
Potri.001G443025 Populus trichocarpa HOM05D007837 ORTHO05D009965 2.0e-82 311.2 246 64.6
Psat7g145400 Pisum sativum HOM05D007837 ORTHO05D009965 5.9e-82 309.7 247 59.5
Medtr4g035250 Medicago truncatula HOM05D007837 ORTHO05D009965 2.1e-79 301.2 425 42.4
GSVIVG01037969001 Vitis vinifera HOM05D007837 ORTHO05D009965 9.9e-69 265.8 212 62.7
arahy.Tifrunner.gnm1.ann1.FUT705 Arachis hypogaea HOM05D007837 ORTHO05D009965 3.7e-68 263.8 494 35.0
arahy.Tifrunner.gnm1.ann1.SA9RL2 Arachis hypogaea HOM05D007837 ORTHO05D009965 3.5e-66 257.3 566 32.3
SEGI_16109 Sequoiadendron giganteum HOM05D007837 ORTHO05D009965 4.0e-62 243.8 558 30.6
AagrBONN_evm.TU.Sc2ySwM_228.3840 Anthoceros agrestis HOM05D007837 ORTHO05D009965 5.1e-49 200.3 685 26.7
SMO118G0556 Selaginella moellendorffii HOM05D007837 ORTHO05D009965 3.2e-43 181.0 333 37.2
Haze_05985 Corylus avellana HOM05D007837 ORTHO05D009965 3.7e-39 167.5 129 64.3
TAR633G0058 Trochodendron aralioides HOM05D007837 ORTHO05D009965 6.9e-38 163.3 176 48.9
TPR.G10794 Trifolium pratense HOM05D007837 ORTHO05D009965 3.4e-37 161.0 157 51.0
Hma1.2p1_0410F.1_g147010 Hydrangea macrophylla HOM05D007837 ORTHO05D009965 7.6e-37 159.8 104 73.1
Sabra11G0145700 Salix brachista HOM05D007837 ORTHO05D009965 2.6e-29 134.8 111 60.4
TPR.G1949 Trifolium pratense HOM05D007837 ORTHO05D009965 1.6e-26 125.6 330 30.0
GSVIVG01037970001 Vitis vinifera HOM05D007837 ORTHO05D009965 8.7e-25 119.8 103 60.2
Oeu008971.1 Olea europaea HOM05D007837 ORTHO05D009965 1.9e-24 118.6 104 57.7
Hma1.2p1_0410F.1_g147000 Hydrangea macrophylla HOM05D007837 ORTHO05D009965 9.7e-24 116.3 211 36.5
Medtr4g035220 Medicago truncatula HOM05D007837 ORTHO05D009965 2.2e-23 115.2 114 54.4
Pp3c11_2120 Physcomitrium patens HOM05D007670 ORTHO05D009646 3.2e-19 101.3 243 30.0
TAR365G1222 Trochodendron aralioides HOM05D001154 ORTHO05D010892 4.6e-18 97.4 63 71.4
TAR086G0001 Trochodendron aralioides HOM05D007837 ORTHO05D009965 6.1e-18 97.1 62 74.2
TAR626G1098 Trochodendron aralioides HOM05D001154 ORTHO05D010892 1.0e-17 96.3 63 71.4
Pp3c26_6480 Physcomitrium patens HOM05D007670 ORTHO05D009646 2.3e-17 95.1 238 29.4
Pp3c26_6484 Physcomitrium patens HOM05D007670 ORTHO05D009646 2.3e-17 95.1 238 29.4
Pp3c10_12340 Physcomitrium patens HOM05D007670 ORTHO05D009646 3.0e-17 94.7 353 27.5
Glyma.03G069100 Glycine max HOM05D007837 ORTHO05D009965 3.3e-16 91.3 132 43.2
SEGI_28887 Sequoiadendron giganteum HOM05D007670 ORTHO05D009646 3.7e-15 87.8 240 28.8
Pp3c7_23860 Physcomitrium patens HOM05D007670 ORTHO05D009646 4.8e-15 87.4 281 24.2
Mapoly0020s0028 Marchantia polymorpha HOM05D007670 ORTHO05D009646 3.4e-13 81.3 354 24.3
Cfa019228 Carpinus fangiana HOM05D007670 ORTHO05D009646 5.9e-13 80.5 238 27.3
Ciclev10024352m.g Citrus clementina HOM05D007670 ORTHO05D009646 1.7e-12 79.0 238 27.7
Aqoxy3G01244 Aquilegia oxysepala HOM05D007670 ORTHO05D009646 2.9e-12 78.2 254 26.0
Pp3c18_13530 Physcomitrium patens HOM05D007670 ORTHO05D009646 3.8e-12 77.8 252 24.6
Eucgr.K02784 Eucalyptus grandis HOM05D007670 ORTHO05D009646 6.5e-12 77.0 239 26.4
PGR044G2723 Punica granatum HOM05D007670 ORTHO05D009646 6.5e-12 77.0 241 26.6
ClCG03G003050 Citrullus lanatus HOM05D007670 ORTHO05D009646 8.5e-12 76.6 241 27.4
PSO478G3950 Papaver somniferum HOM05D007670 ORTHO05D009646 8.5e-12 76.6 245 26.9
HPP92_001311 Vanilla planifolia HOM05D007670 ORTHO05D009646 1.4e-11 75.9 235 26.4
Prupe.5G164600 Prunus persica HOM05D007670 ORTHO05D009646 3.2e-11 74.7 240 26.2
ATR0824G010 Amborella trichopoda HOM05D007670 ORTHO05D009646 5.5e-11 73.9 227 28.2
TWI39G0169 Tripterygium wilfordii HOM05D007670 ORTHO05D009646 1.2e-10 72.8 245 27.8
VMungo1215G0346 Vigna mungo HOM05D007670 ORTHO05D009646 3.6e-10 71.2 317 24.0
MELO3C002304.2 Cucumis melo HOM05D007670 ORTHO05D009646 4.7e-10 70.9 195 29.7
Psat4g061560 Pisum sativum HOM05D007670 ORTHO05D009646 4.7e-10 70.9 313 24.6
Zm00001eb388830 Zea mays HOM05D007670 ORTHO05D009646 4.7e-10 70.9 239 27.6
Atru.chr9.2593 Acer truncatum HOM05D007670 ORTHO05D009646 6.1e-10 70.5 217 26.3
Ca_19420_v3 Cicer arietinum L. HOM05D007670 ORTHO05D009646 6.1e-10 70.5 312 24.0
FvH4_5g06391 Fragaria vesca HOM05D007670 ORTHO05D009646 6.1e-10 70.5 313 23.6
FAN13G0035 Fragaria x ananassa HOM05D007670 ORTHO05D009646 6.1e-10 70.5 313 24.3
FAN18G1020 Fragaria x ananassa HOM05D007670 ORTHO05D009646 6.1e-10 70.5 313 24.3
Sed0003800 Sechium edule HOM05D007670 ORTHO05D009646 7.9e-10 70.1 267 26.2
Cc04_g11380 Coffea canephora HOM05D007670 ORTHO05D009646 1.0e-09 69.7 256 24.2
TAR371G0483 Trochodendron aralioides HOM05D001154 ORTHO05D010892 1.0e-09 69.7 40 75.0
Migut.O00167 Erythranthe guttata HOM05D007670 ORTHO05D009646 1.4e-09 69.3 246 28.0
FAN08G1903 Fragaria x ananassa HOM05D007670 ORTHO05D009646 1.4e-09 69.3 252 25.8
Gohir.A03G074800 Gossypium hirsutum HOM05D007670 ORTHO05D009646 1.4e-09 69.3 237 26.2
TWI23G1319 Tripterygium wilfordii HOM05D007670 ORTHO05D009646 1.4e-09 69.3 202 27.7
COL.COLO4_33501 Corchorus olitorius HOM05D007670 ORTHO05D009646 1.8e-09 68.9 242 25.2
Glyma.05G042100 Glycine max HOM05D007670 ORTHO05D009646 2.3e-09 68.6 220 27.3
CiPaw.12G031800 Carya illinoinensis HOM05D007670 ORTHO05D009646 3.0e-09 68.2 153 30.1
Lj5C130G15 Lonicera japonica HOM05D007670 ORTHO05D009646 3.0e-09 68.2 242 25.6
Medtr4g104750 Medicago truncatula HOM05D007670 ORTHO05D009646 3.0e-09 68.2 222 25.7
Potri.015G084300 Populus trichocarpa HOM05D007670 ORTHO05D009646 3.0e-09 68.2 204 27.9
Sopen03g031210 Solanum pennellii HOM05D007670 ORTHO05D009646 3.0e-09 68.2 253 26.9
TPR.G37476 Trifolium pratense HOM05D007670 ORTHO05D009646 3.0e-09 68.2 223 25.1
FAN04G2873 Fragaria x ananassa HOM05D007670 ORTHO05D009646 3.9e-09 67.8 313 24.0
MD14G1170500 Malus domestica HOM05D007670 ORTHO05D009646 3.9e-09 67.8 178 27.5
Pp3c21_7410 Physcomitrium patens HOM05D007670 ORTHO05D009646 3.9e-09 67.8 233 23.6
arahy.Tifrunner.gnm1.ann1.4HF9FM Arachis hypogaea HOM05D007670 ORTHO05D009646 5.1e-09 67.4 216 26.4
Manes.06G111300 Manihot esculenta HOM05D007670 ORTHO05D009646 5.1e-09 67.4 230 25.7
Phvul.003G205800 Phaseolus vulgaris HOM05D007670 ORTHO05D009646 6.7e-09 67.0 215 26.0
Actinidia08035 Actinidia chinensis HOM05D007670 ORTHO05D009646 1.1e-08 66.2 239 25.1
RcHm_v2.0_Chr7g0192411 Rosa chinensis HOM05D007670 ORTHO05D009646 1.1e-08 66.2 263 25.9
TAR362G0005 Trochodendron aralioides HOM05D007837 ORTHO05D009965 1.1e-08 66.2 70 44.3
DCAR_007451 Daucus carota HOM05D007670 ORTHO05D009646 1.5e-08 65.9 240 24.6
Lsat_1_v5_gn_5_13921 Lactuca sativa HOM05D007670 ORTHO05D009646 1.5e-08 65.9 172 28.5
GSVIVG01007632001 Vitis vinifera HOM05D007670 ORTHO05D009646 1.5e-08 65.9 238 25.2
CANSAT80G0945 Cannabis sativa HOM05D007670 ORTHO05D009646 2.6e-08 65.1 234 24.8
ECA246G3610 Erigeron canadensis HOM05D007670 ORTHO05D009646 2.6e-08 65.1 172 26.7
TAR629G1516 Trochodendron aralioides HOM05D007670 ORTHO05D009646 2.6e-08 65.1 204 25.5
HPP92_003438 Vanilla planifolia HOM05D001493 ORTHO05D001681 4.4e-08 64.3 297 25.3
SEGI_38678 Sequoiadendron giganteum HOM05D007670 ORTHO05D009646 5.7e-08 63.9 231 27.7
arahy.Tifrunner.gnm1.ann1.2S9CTF Arachis hypogaea HOM05D007670 ORTHO05D009646 1.3e-07 62.8 213 25.4
Lj4g0014046 Lotus japonicus HOM05D007670 ORTHO05D009646 1.7e-07 62.4 295 25.4
PGSC0003DMG400018192 Solanum tuberosum HOM05D007670 ORTHO05D009646 1.7e-07 62.4 252 27.8
Nitab4.5_0008913g0020 Nicotiana tabacum HOM05D007670 ORTHO05D009646 2.8e-07 61.6 224 25.9
Thecc.03G116000 Theobroma cacao HOM05D007670 ORTHO05D009646 3.7e-07 61.2 179 25.7
Sabra11G0145800 Salix brachista HOM05D007837 ORTHO05D009965 6.3e-07 60.5 90 36.7
Cpa.g.sc192.14 Carica papaya HOM05D007837 ORTHO05D009965 3.1e-06 58.2 57 54.4


User provided reference genes

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