Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g068890.3 Solanum lycopersicum HOM05D007439 ORTHO05D009294 3.6e-148 529.6 717 100.0
Sopen02g017990 Solanum pennellii HOM05D007439 ORTHO05D009294 3.8e-145 519.6 717 99.4
PGSC0003DMG400010332 Solanum tuberosum HOM05D007439 ORTHO05D009294 6.9e-139 498.8 717 97.6
CAN.G149.50 Capsicum annuum HOM05D007439 ORTHO05D009294 1.1e-104 385.2 715 91.3
Nitab4.5_0001288g0070 Nicotiana tabacum HOM05D002343 ORTHO05D004258 1.4e-102 378.3 719 90.3
Peaxi162Scf00149g00061 Petunia axillaris HOM05D007439 ORTHO05D009294 3.4e-53 214.2 123 88.6
Nitab4.5_0000029g0150 Nicotiana tabacum HOM05D007439 ORTHO05D009294 5.4e-51 206.8 129 85.3
SGA_v2.0_scaffold298G47685 Striga asiatica HOM05D007439 ORTHO05D009294 9.5e-48 196.1 698 65.0
MD05G1251800 Malus domestica HOM05D007439 ORTHO05D009294 3.1e-46 191.0 651 83.3
Prupe.4G111800 Prunus persica HOM05D007439 ORTHO05D009294 1.2e-45 189.1 651 78.2
Oeu060350.1 Olea europaea HOM05D007439 ORTHO05D009294 4.4e-45 187.2 197 57.4
CANSAT80G1475 Cannabis sativa HOM05D007439 ORTHO05D009294 2.2e-44 184.9 706 75.4
Cc09_g06120 Coffea canephora HOM05D007439 ORTHO05D009294 2.2e-44 184.9 680 75.6
Manes.15G044700 Manihot esculenta HOM05D007439 ORTHO05D009294 3.7e-44 184.1 693 80.1
Actinidia22395 Actinidia chinensis HOM05D007439 ORTHO05D009294 1.9e-43 181.8 661 82.1
CiPaw.09G077400 Carya illinoinensis HOM05D007439 ORTHO05D009294 4.1e-43 180.6 667 81.9
Migut.F01393 Erythranthe guttata HOM05D007439 ORTHO05D009294 4.1e-43 180.6 137 67.9
CANSAT80G1820 Cannabis sativa HOM05D007439 ORTHO05D009294 2.1e-42 178.3 706 75.8
QL11p016354 Quercus lobata HOM05D002343 ORTHO05D004258 2.1e-42 178.3 672 81.5
Rhsim08G0175300 Rhododendron simsii HOM05D007439 ORTHO05D009294 3.5e-42 177.6 707 79.2
MSTRG.16346 Avicennia marina HOM05D007439 ORTHO05D009294 6.0e-42 176.8 708 79.1
Dinv02254 Davidia involucrata HOM05D007439 ORTHO05D009294 6.0e-42 176.8 665 83.0
CSS0002129 Camellia sinensis var. sinensis HOM05D007439 ORTHO05D009294 1.3e-41 175.6 136 67.6
DCAR_003780 Daucus carota HOM05D007439 ORTHO05D009294 1.7e-41 175.3 148 61.5
Gohir.D05G147800 Gossypium hirsutum HOM05D007439 ORTHO05D009294 2.3e-41 174.9 681 75.9
Ciclev10014445m.g Citrus clementina HOM05D007439 ORTHO05D009294 3.9e-41 174.1 194 53.1
Gorai.009G151900 Gossypium raimondii HOM05D007439 ORTHO05D009294 6.6e-41 173.3 681 75.8
Lalb_Chr01g0021581 Lupinus albus HOM05D007439 ORTHO05D009294 8.6e-41 172.9 677 80.1
TWI38G1636 Tripterygium wilfordii HOM05D007439 ORTHO05D009294 8.6e-41 172.9 145 62.1
Duzib235G1301 Durio zibethinus HOM05D007439 ORTHO05D009294 1.5e-40 172.2 683 74.8
Cfa000712 Carpinus fangiana HOM05D007439 ORTHO05D009294 1.9e-40 171.8 654 82.6
SalBow6G0510 Salvia bowleyana HOM05D007439 ORTHO05D009294 2.5e-40 171.4 137 65.7
Ah.11g038960 Amaranthus hybridus HOM05D007439 ORTHO05D009294 5.6e-40 170.2 663 71.9
FAN25G2844 Fragaria x ananassa HOM05D002343 ORTHO05D004258 7.3e-40 169.9 150 56.7
Psat0s929g0160 Pisum sativum HOM05D007439 ORTHO05D009294 7.3e-40 169.9 649 82.4
Gohir.A05G145400 Gossypium hirsutum HOM05D007439 ORTHO05D009294 1.6e-39 168.7 684 68.1
Haze_06039 Corylus avellana HOM05D007439 ORTHO05D009294 4.7e-39 167.2 142 63.4
Lj2C350T3 Lonicera japonica HOM05D007439 ORTHO05D009294 4.7e-39 167.2 194 50.5
FvH4_3g12270 Fragaria vesca HOM05D007439 ORTHO05D009294 6.2e-39 166.8 711 77.2
RcHm_v2.0_Chr5g0020081 Rosa chinensis HOM05D007439 ORTHO05D009294 1.4e-38 165.6 651 82.3
Thecc.06G142600 Theobroma cacao HOM05D007439 ORTHO05D009294 2.4e-38 164.9 678 78.9
Thecc.06G142800 Theobroma cacao HOM05D007439 ORTHO05D009294 2.4e-38 164.9 678 78.9
FAN16G2455 Fragaria x ananassa HOM05D002343 ORTHO05D004258 3.1e-38 164.5 196 48.5
Lj3g0009249 Lotus japonicus HOM05D007439 ORTHO05D009294 3.1e-38 164.5 141 58.9
PGR042G2360 Punica granatum HOM05D007439 ORTHO05D009294 4.0e-38 164.1 662 71.5
Medtr7g405940 Medicago truncatula HOM05D007439 ORTHO05D009294 8.9e-38 162.9 648 82.7
THA.LOC104811547 Tarenaya hassleriana HOM05D007439 ORTHO05D009294 8.9e-38 162.9 141 60.3
Ca_04050_v3 Cicer arietinum L. HOM05D007439 ORTHO05D009294 1.2e-37 162.5 671 80.5
Glyma.09G242500 Glycine max HOM05D007439 ORTHO05D009294 1.5e-37 162.2 649 81.4
HanXRQChr14g0447351 Helianthus annuus HOM05D007439 ORTHO05D009294 1.5e-37 162.2 655 81.5
Sed0017437 Sechium edule HOM05D007439 ORTHO05D009294 2.0e-37 161.8 704 71.6
ClCG01G009470 Citrullus lanatus HOM05D007439 ORTHO05D009294 1.7e-36 158.7 676 79.6
Cpa.g.sc135.9 Carica papaya HOM05D007439 ORTHO05D009294 3.8e-36 157.5 200 47.0
Thecc.06G142300 Theobroma cacao HOM05D007439 ORTHO05D009294 1.4e-35 155.6 678 79.1
MELO3C021752.2 Cucumis melo HOM05D007439 ORTHO05D009294 2.4e-35 154.8 707 72.4
Sp7g18380 Schrenkiella parvula HOM05D004848 ORTHO05D006859 2.4e-35 154.8 147 55.1
FAN21G0604 Fragaria x ananassa HOM05D002343 ORTHO05D004258 4.2e-35 154.1 123 61.8
AT4G19890 Arabidopsis thaliana HOM05D007439 ORTHO05D009294 9.3e-35 152.9 140 57.1
Nitab4.5_0013428g0020 Nicotiana tabacum HOM05D007439 ORTHO05D009294 9.3e-35 152.9 90 84.4
Lsat_1_v5_gn_2_63940 Lactuca sativa HOM05D007439 ORTHO05D009294 1.2e-34 152.5 111 68.5
Eucgr.E01800 Eucalyptus grandis HOM05D007439 ORTHO05D009294 1.6e-34 152.1 138 58.7
AL7G34150 Arabidopsis lyrata HOM05D004848 ORTHO05D009294 2.1e-34 151.8 138 58.0
Potri.015G121700 Populus trichocarpa HOM05D007439 ORTHO05D009294 2.1e-34 151.8 652 81.9
BcaNung01745 Brassica carinata HOM05D007439 ORTHO05D009294 3.5e-34 151.0 136 58.1
CsaV3_1G046310 Cucumis sativus L. HOM05D007439 ORTHO05D009294 3.5e-34 151.0 703 71.1
A01p11750 Brassica napus HOM05D007439 ORTHO05D009294 4.6e-34 150.6 144 54.9
BraA01t01117Z Brassica rapa HOM05D007439 ORTHO05D009294 4.6e-34 150.6 144 54.9
Eucgr.E01795 Eucalyptus grandis HOM05D007439 ORTHO05D009294 4.6e-34 150.6 141 56.7
BcaC09g51360 Brassica carinata HOM05D007439 ORTHO05D009294 6.0e-34 150.2 143 55.2
C01p13940 Brassica napus HOM05D007439 ORTHO05D009294 6.0e-34 150.2 143 55.2
BolC1t01361H Brassica oleracea HOM05D007439 ORTHO05D009294 6.0e-34 150.2 143 55.2
Sabra15G0138100 Salix brachista HOM05D007439 ORTHO05D009294 7.8e-34 149.8 652 81.9
EL10Ac1g02315 Beta vulgaris HOM05D007439 ORTHO05D009294 1.3e-33 149.1 159 49.7
TAR633G0007 Trochodendron aralioides HOM05D007439 ORTHO05D009294 1.3e-33 149.1 151 56.3
Aa31LG6G2350 Aethionema arabicum HOM05D004848 ORTHO05D006859 2.3e-33 148.3 132 59.8
AUR62035769 Chenopodium quinoa HOM05D007439 ORTHO05D009294 3.9e-33 147.5 195 44.6
Atru.chr10.530 Acer truncatum HOM05D007439 ORTHO05D009294 1.5e-32 145.6 155 51.0
arahy.Tifrunner.gnm1.ann1.FQ7S35 Arachis hypogaea HOM05D002637 ORTHO05D008095 2.5e-32 144.8 661 80.2
Medtr7g007400 Medicago truncatula HOM05D007439 ORTHO05D009294 1.3e-31 142.5 621 84.1
Phvul.008G046300 Phaseolus vulgaris HOM05D007439 ORTHO05D009294 1.3e-31 142.5 649 80.7
Carub.0007s2132 Capsella rubella HOM05D007439 ORTHO05D009294 1.1e-30 139.4 127 58.3
ECA238G3489 Erigeron canadensis HOM05D000031 ORTHO05D000030 1.8e-30 138.7 110 67.3
Thhalv10027430m.g Eutrema salsugineum HOM05D007439 ORTHO05D009294 2.4e-30 138.3 127 58.3
CARHR226670 Cardamine hirsuta HOM05D007439 ORTHO05D009294 9.0e-30 136.3 104 65.4
VMungo1383G3026 Vigna mungo HOM05D007439 ORTHO05D009294 9.0e-30 136.3 661 78.8
Aqoxy7G03766 Aquilegia oxysepala HOM05D007439 ORTHO05D009294 9.9e-29 132.9 706 63.7
Eucgr.E01833 Eucalyptus grandis HOM05D007439 ORTHO05D009294 3.8e-28 131.0 91 68.1
AUR62034958 Chenopodium quinoa HOM05D007439 ORTHO05D009294 1.4e-27 129.0 120 55.0
Haze_06038 Corylus avellana HOM05D007439 ORTHO05D009294 3.2e-27 127.9 94 70.2
Sc02g0008330 Simmondsia chinensis HOM05D007439 ORTHO05D009294 4.2e-27 127.5 137 48.2
SHI24856 Sapria himalayana HOM05D007439 ORTHO05D009294 9.3e-27 126.3 148 48.0
ATR0049G016 Amborella trichopoda HOM05D007439 ORTHO05D009294 1.6e-26 125.6 167 41.9
COL.COLO4_30991 Corchorus olitorius HOM05D007439 ORTHO05D009294 3.3e-24 117.9 84 65.5
MBI03_g16306_MAGBIO Magnolia biondii HOM05D007439 ORTHO05D009294 9.6e-24 116.3 112 54.5
RcHm_v2.0_Chr7g0211421 Rosa chinensis HOM05D007439 ORTHO05D009294 1.6e-23 115.5 99 57.6
QL11p017775 Quercus lobata HOM05D000038 ORTHO05D000143 2.1e-23 115.2 93 59.1
PSO210G5823 Papaver somniferum HOM05D007439 ORTHO05D009294 3.6e-23 114.4 171 39.2
PSO210G3018 Papaver somniferum HOM05D007439 ORTHO05D009294 6.2e-23 113.6 93 57.0
HPP92_005782 Vanilla planifolia HOM05D007439 ORTHO05D009294 6.2e-23 113.6 145 46.9
Eucgr.E01847 Eucalyptus grandis HOM05D007439 ORTHO05D009294 8.1e-23 113.2 92 62.0
HPP92_005808 Vanilla planifolia HOM05D007439 ORTHO05D009294 1.8e-22 112.1 145 46.2
CDE06G0761 Ceratophyllum demersum HOM05D000063 ORTHO05D002147 3.2e-19 101.3 136 43.4
Eucgr.E01870 Eucalyptus grandis HOM05D007439 ORTHO05D009294 1.2e-18 99.4 92 54.3
BcaB06g28505 Brassica carinata HOM05D007439 ORTHO05D009294 6.7e-17 93.6 91 56.0
BolC4t27551H Brassica oleracea HOM05D007439 ORTHO05D009294 6.7e-17 93.6 91 56.0
MD10G1232900 Malus domestica HOM05D007439 ORTHO05D009294 8.7e-17 93.2 69 62.3
Os11g0607100 Oryza sativa ssp. japonica HOM05D007439 ORTHO05D009294 8.1e-15 86.7 93 40.9
Haze_06045 Corylus avellana HOM05D001622 ORTHO05D009294 2.4e-14 85.1 65 64.6
Eucgr.E01791 Eucalyptus grandis HOM05D007439 ORTHO05D009294 9.0e-14 83.2 57 70.2
C04p60520 Brassica napus HOM05D007439 ORTHO05D009294 7.6e-13 80.1 79 59.5
Eucgr.E01806 Eucalyptus grandis HOM05D007439 ORTHO05D009294 6.5e-12 77.0 50 74.0
SEGI_11644 Sequoiadendron giganteum HOM05D007439 ORTHO05D009294 2.5e-11 75.1 145 34.5
SEGI_34940 Sequoiadendron giganteum HOM05D007439 ORTHO05D009294 2.5e-11 75.1 145 34.5
Zm00001eb167160 Zea mays HOM05D007439 ORTHO05D009294 4.3e-08 64.3 108 35.2


User provided reference genes

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