Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g068720.3 Solanum lycopersicum HOM05D005021 ORTHO05D006824 0.0e+00 2756.9 1386 100.0
Sopen02g017890 Solanum pennellii HOM05D005021 ORTHO05D006824 0.0e+00 2741.5 1386 99.5
Nitab4.5_0001288g0150 Nicotiana tabacum HOM05D005021 ORTHO05D006824 0.0e+00 2644.0 1385 95.8
Nitab4.5_0007745g0040 Nicotiana tabacum HOM05D005021 ORTHO05D006824 0.0e+00 2631.3 1397 94.8
CAN.G149.8 Capsicum annuum HOM05D005021 ORTHO05D006824 0.0e+00 2607.8 1399 94.1
Dinv25918 Davidia involucrata HOM05D005021 ORTHO05D006824 0.0e+00 2382.1 1389 85.1
CSS0004737 Camellia sinensis var. sinensis HOM05D005021 ORTHO05D006824 0.0e+00 2360.9 1390 84.0
Migut.M01986 Erythranthe guttata HOM05D005021 ORTHO05D006824 0.0e+00 2327.4 1394 83.1
Cc09_g06010 Coffea canephora HOM05D005021 ORTHO05D006824 0.0e+00 2319.3 1392 82.8
COL.COLO4_17653 Corchorus olitorius HOM05D005021 ORTHO05D006824 0.0e+00 2309.3 1389 82.3
Potri.012G124400 Populus trichocarpa HOM05D005021 ORTHO05D006824 0.0e+00 2301.2 1390 81.6
Sabra12G0094200 Salix brachista HOM05D005021 ORTHO05D006824 0.0e+00 2301.2 1390 81.8
Thecc.02G008800 Theobroma cacao HOM05D005021 ORTHO05D006824 0.0e+00 2300.4 1389 82.1
Prupe.4G113100 Prunus persica HOM05D005021 ORTHO05D006824 0.0e+00 2300.0 1390 81.8
Oeu060353.1 Olea europaea HOM05D005021 ORTHO05D006824 0.0e+00 2291.5 1412 80.8
QL11p016313 Quercus lobata HOM05D005021 ORTHO05D006824 0.0e+00 2287.7 1389 81.6
Gohir.A01G141263 Gossypium hirsutum HOM05D005021 ORTHO05D006824 0.0e+00 2284.6 1391 81.4
RcHm_v2.0_Chr5g0020301 Rosa chinensis HOM05D005021 ORTHO05D006824 0.0e+00 2282.7 1387 81.8
CANSAT35G0082 Cannabis sativa HOM05D005021 ORTHO05D006824 0.0e+00 2280.8 1390 81.2
GSVIVG01012103001 Vitis vinifera HOM05D005021 ORTHO05D006824 0.0e+00 2280.4 1395 81.4
Gorai.002G164100 Gossypium raimondii HOM05D005021 ORTHO05D006824 0.0e+00 2280.0 1391 81.4
Atru.chr10.559 Acer truncatum HOM05D005021 ORTHO05D006824 0.0e+00 2277.3 1389 80.8
Cfa000703 Carpinus fangiana HOM05D005021 ORTHO05D006824 0.0e+00 2276.1 1389 80.7
Gohir.D01G132500 Gossypium hirsutum HOM05D005021 ORTHO05D006824 0.0e+00 2269.2 1391 81.1
Ciclev10014047m.g Citrus clementina HOM05D005021 ORTHO05D006824 0.0e+00 2267.7 1388 80.4
MD10G1231300 Malus domestica HOM05D005021 ORTHO05D006824 0.0e+00 2267.3 1390 81.4
FvH4_3g12410 Fragaria vesca HOM05D005021 ORTHO05D006824 0.0e+00 2266.1 1387 81.3
TAR626G1325 Trochodendron aralioides HOM05D005021 ORTHO05D006824 0.0e+00 2264.2 1389 80.5
SalBow8G3018 Salvia bowleyana HOM05D005021 ORTHO05D006824 0.0e+00 2261.9 1397 80.9
Eucgr.D00052 Eucalyptus grandis HOM05D005021 ORTHO05D006824 0.0e+00 2261.1 1389 80.4
HanXRQChr14g0447451 Helianthus annuus HOM05D005021 ORTHO05D006824 0.0e+00 2259.6 1386 80.8
DCAR_003775 Daucus carota HOM05D005021 ORTHO05D006824 0.0e+00 2253.4 1386 80.9
CiPaw.10G064100 Carya illinoinensis HOM05D005021 ORTHO05D006824 0.0e+00 2249.2 1388 79.8
Cpa.g.sc30.159 Carica papaya HOM05D005021 ORTHO05D006824 0.0e+00 2248.4 1401 79.9
Glyma.20G019300 Glycine max HOM05D005021 ORTHO05D006824 0.0e+00 2247.6 1390 79.1
TWI38G0923 Tripterygium wilfordii HOM05D005021 ORTHO05D006824 0.0e+00 2247.6 1390 79.9
ECA238G3003 Erigeron canadensis HOM05D005021 ORTHO05D006824 0.0e+00 2246.1 1387 80.5
MD05G1250500 Malus domestica HOM05D005021 ORTHO05D006824 0.0e+00 2239.5 1390 80.2
TWI38G0776 Tripterygium wilfordii HOM05D005021 ORTHO05D006824 0.0e+00 2236.5 1387 79.7
Lj4g0005220 Lotus japonicus HOM05D005021 ORTHO05D006824 0.0e+00 2231.1 1390 79.1
Ca_18756_v3 Cicer arietinum L. HOM05D005021 ORTHO05D006824 0.0e+00 2221.0 1388 78.5
FAN21G1452 Fragaria x ananassa HOM05D005021 ORTHO05D006824 0.0e+00 2220.3 1387 79.9
Duzib248G0067 Durio zibethinus HOM05D005021 ORTHO05D006824 0.0e+00 2219.9 1347 81.5
Phvul.002G097500 Phaseolus vulgaris HOM05D005021 ORTHO05D006824 0.0e+00 2219.5 1391 78.4
Nn7g38248 Nelumbo nucifera HOM05D005021 ORTHO05D006824 0.0e+00 2218.4 1426 77.9
Psat7g129680 Pisum sativum HOM05D005021 ORTHO05D006824 0.0e+00 2216.0 1388 78.5
TPR.G38288 Trifolium pratense HOM05D005021 ORTHO05D006824 0.0e+00 2214.5 1388 78.5
ClCG01G009560 Citrullus lanatus HOM05D005021 ORTHO05D006824 0.0e+00 2213.7 1389 78.1
arahy.Tifrunner.gnm1.ann1.79RC6W Arachis hypogaea HOM05D005021 ORTHO05D006824 0.0e+00 2201.0 1482 74.5
Medtr4g084140 Medicago truncatula HOM05D005021 ORTHO05D006824 0.0e+00 2200.2 1390 78.0
Haze_06074 Corylus avellana HOM05D005021 ORTHO05D006824 0.0e+00 2197.9 1433 77.1
Lalb_Chr16g0385181 Lupinus albus HOM05D005021 ORTHO05D006824 0.0e+00 2194.1 1392 77.7
CsaV3_1G046230 Cucumis sativus L. HOM05D005021 ORTHO05D006824 0.0e+00 2193.3 1389 77.8
MELO3C021737.2 Cucumis melo HOM05D005021 ORTHO05D006824 0.0e+00 2192.9 1390 77.9
Potri.015G124500 Populus trichocarpa HOM05D005021 ORTHO05D006824 0.0e+00 2191.4 1377 79.3
Sed0001856 Sechium edule HOM05D005021 ORTHO05D006824 0.0e+00 2191.0 1386 78.4
FAN25G1951 Fragaria x ananassa HOM05D005021 ORTHO05D006824 0.0e+00 2178.7 1403 78.3
PGR004G0612 Punica granatum HOM05D005021 ORTHO05D006824 0.0e+00 2176.4 1376 79.0
Carub.0004s1679 Capsella rubella HOM05D005021 ORTHO05D006824 0.0e+00 2168.7 1408 77.2
AL4G31120 Arabidopsis lyrata HOM05D005021 ORTHO05D006824 0.0e+00 2158.6 1407 76.8
Thhalv10016146m.g Eutrema salsugineum HOM05D005021 ORTHO05D006824 0.0e+00 2156.3 1407 76.8
Aqoxy1G01424 Aquilegia oxysepala HOM05D005021 ORTHO05D006824 0.0e+00 2155.6 1387 77.4
THA.LOC104798554 Tarenaya hassleriana HOM05D005021 ORTHO05D006824 0.0e+00 2152.9 1397 76.4
Aa31LG9G16120 Aethionema arabicum HOM05D005021 ORTHO05D006824 0.0e+00 2148.2 1418 75.5
BcaB02g09478 Brassica carinata HOM05D005021 ORTHO05D006824 0.0e+00 2143.6 1407 76.3
BolC4t22962H Brassica oleracea HOM05D005021 ORTHO05D006824 0.0e+00 2143.2 1407 76.2
Lj1A1146G59 Lonicera japonica HOM05D005021 ORTHO05D006824 0.0e+00 2142.9 1417 77.6
A05p10630 Brassica napus HOM05D005021 ORTHO05D006824 0.0e+00 2141.7 1406 76.0
C04p13730 Brassica napus HOM05D005021 ORTHO05D006824 0.0e+00 2141.3 1407 76.0
BraA05t20004Z Brassica rapa HOM05D005021 ORTHO05D006824 0.0e+00 2139.8 1407 75.9
arahy.Tifrunner.gnm1.ann1.59QZXR Arachis hypogaea HOM05D005021 ORTHO05D006824 0.0e+00 2138.2 1485 72.7
Hma1.2p1_1005F.1_g246940 Hydrangea macrophylla HOM05D005021 ORTHO05D006824 0.0e+00 2134.8 1224 85.5
PSO675G8902 Papaver somniferum HOM05D005021 ORTHO05D006824 0.0e+00 2132.1 1392 76.7
BcaB02g09480 Brassica carinata HOM05D005021 ORTHO05D006824 0.0e+00 2123.6 1417 75.5
AT2G35110 Arabidopsis thaliana HOM05D005021 ORTHO05D006824 0.0e+00 2110.1 1372 76.6
Manes.16G055900 Manihot esculenta HOM05D005021 ORTHO05D006824 0.0e+00 2103.2 1253 82.4
vmacro03526 Vaccinium macrocarpon HOM05D005021 ORTHO05D006824 0.0e+00 2090.1 1699 65.1
RhsimUnG0043400 Rhododendron simsii HOM05D005021 ORTHO05D006824 0.0e+00 2028.8 1304 78.2
AUR62037395 Chenopodium quinoa HOM05D005021 ORTHO05D006824 0.0e+00 1992.6 1352 74.0
SGA_v2.0_scaffold175G39355 Striga asiatica HOM05D005021 ORTHO05D006824 0.0e+00 1989.9 1378 74.8
AUR62041742 Chenopodium quinoa HOM05D005021 ORTHO05D006824 0.0e+00 1989.2 1333 74.6
Hund09140 Selenicereus undatus HOM05D005021 ORTHO05D006824 0.0e+00 1981.1 1347 74.5
unitig_748.g8077 Utricularia gibba HOM05D005021 ORTHO05D006824 0.0e+00 1973.4 1329 74.5
EL10Ac9g20953 Beta vulgaris HOM05D005021 ORTHO05D006824 0.0e+00 1943.7 1457 69.4
Os08g0544500 Oryza sativa ssp. japonica HOM05D005021 ORTHO05D006824 0.0e+00 1919.1 1369 69.8
Sc17g0003700 Simmondsia chinensis HOM05D005021 ORTHO05D006824 0.0e+00 1909.4 1186 79.0
ATR0752G031 Amborella trichopoda HOM05D005021 ORTHO05D006824 0.0e+00 1865.5 1393 67.3
Zm00001eb405230 Zea mays HOM05D005021 ORTHO05D006824 0.0e+00 1862.8 1369 68.4
Ah.01g015830 Amaranthus hybridus HOM05D005021 ORTHO05D006824 0.0e+00 1770.4 1531 61.7
Peaxi162Scf00149g00312 Petunia axillaris HOM05D005021 ORTHO05D006824 0.0e+00 1767.3 927 95.5
CDE05G3601 Ceratophyllum demersum HOM05D005021 ORTHO05D006824 0.0e+00 1471.8 1156 63.7
Sp4g17340 Schrenkiella parvula HOM05D005021 ORTHO05D006824 0.0e+00 1407.9 823 84.3
Mapoly0087s0075 Marchantia polymorpha HOM05D005021 ORTHO05D006824 0.0e+00 1405.6 1397 51.8
Lsat_1_v5_gn_2_63641 Lactuca sativa HOM05D005021 ORTHO05D006824 0.0e+00 1391.3 977 73.0
SMO367G0195 Selaginella moellendorffii HOM05D005021 ORTHO05D006824 0.0e+00 1351.3 1333 51.4
Pp3c11_1080 Physcomitrium patens HOM05D005021 ORTHO05D006824 0.0e+00 1332.4 1345 50.4
Pp3c1_6150 Physcomitrium patens HOM05D005021 ORTHO05D006824 0.0e+00 1329.3 1361 50.0
FAN16G3288 Fragaria x ananassa HOM05D005021 ORTHO05D006824 0.0e+00 1221.1 716 84.5
HPP92_017169 Vanilla planifolia HOM05D005021 ORTHO05D006824 0.0e+00 1198.3 878 67.3
Actinidia33677 Actinidia chinensis HOM05D005021 ORTHO05D006824 0.0e+00 1185.2 791 75.9
CARHR129260 Cardamine hirsuta HOM05D005021 ORTHO05D006824 0.0e+00 1167.9 818 72.1
VMungo0251G0795 Vigna mungo HOM05D005021 ORTHO05D006824 0.0e+00 1163.7 761 75.4
VMungo0251G3115 Vigna mungo HOM05D005021 ORTHO05D006824 8.0e-285 984.6 589 81.3
AagrBONN_evm.TU.Sc2ySwM_344.1422 Anthoceros agrestis HOM05D005021 ORTHO05D006824 5.0e-279 965.3 798 59.0
Potri.015G123900 Populus trichocarpa HOM05D005021 ORTHO05D006824 7.8e-248 861.7 601 72.5
Oeu060352.1 Olea europaea HOM05D005021 ORTHO05D006824 2.8e-221 773.5 485 80.0
QL11p016288 Quercus lobata HOM05D005021 ORTHO05D006824 3.1e-204 716.8 519 69.7
SHI31491 Sapria himalayana HOM05D005021 ORTHO05D006824 1.2e-192 678.3 520 65.0
CBR_g30692 Chara braunii HOM05D005021 ORTHO05D006824 6.7e-183 646.0 1480 29.1
BcaNung06473 Brassica carinata HOM05D005021 ORTHO05D006824 1.7e-154 551.6 529 56.9
HPP92_017178 Vanilla planifolia HOM05D005021 ORTHO05D006824 5.6e-145 520.0 368 69.6
SEGI_39898 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 3.0e-138 497.7 527 50.5
Medtr4g081610 Medicago truncatula HOM05D005021 ORTHO05D006824 2.4e-124 451.4 539 50.1
Psat0s5010g0080 Pisum sativum HOM05D005021 ORTHO05D006824 1.3e-101 375.9 226 78.3
Psat0s2371g0040 Pisum sativum HOM05D000434 ORTHO05D006824 2.1e-91 342.0 221 74.2
SEGI_00319 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 2.4e-87 328.6 192 80.7
Medtr4g081600 Medicago truncatula HOM05D005021 ORTHO05D006824 3.2e-84 318.2 418 45.2
Sp2g07020 Schrenkiella parvula HOM05D005021 ORTHO05D006824 2.1e-67 262.3 297 49.8
HPP92_017177 Vanilla planifolia HOM05D005021 ORTHO05D006824 7.0e-63 247.3 147 81.6
Psat0s5010g0040 Pisum sativum HOM05D005021 ORTHO05D004273 9.4e-52 210.3 139 73.4
SEGI_02164 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 3.8e-45 188.3 128 66.4
Oeu003620.1 Olea europaea HOM05D005021 ORTHO05D006824 2.8e-40 172.2 116 76.7
Potri.015G124200 Populus trichocarpa HOM05D005021 ORTHO05D006824 1.0e-34 153.7 133 64.7
Actinidia33676 Actinidia chinensis HOM05D005021 ORTHO05D006824 3.1e-34 152.1 94 79.8
BcaB07g31175 Brassica carinata HOM05D005021 ORTHO05D006824 4.0e-34 151.8 89 75.3
SGA_v2.0_scaffold88G27325 Striga asiatica HOM05D005021 ORTHO05D006824 9.2e-31 140.6 114 61.4
SEGI_41047 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 2.0e-30 139.4 160 43.8
MBI13_g07384_MAGBIO Magnolia biondii HOM05D005021 ORTHO05D018021 1.7e-29 136.3 113 67.3
GSVIVG01004787001 Vitis vinifera HOM05D000908 ORTHO05D000789 1.5e-28 133.3 83 73.5
QL05p044008 Quercus lobata HOM05D005021 ORTHO05D006824 2.5e-28 132.5 83 78.3
SHI31497 Sapria himalayana HOM05D005021 ORTHO05D006824 2.8e-27 129.0 112 58.0
Lsat_1_v5_gn_6_73941 Lactuca sativa HOM05D005021 ORTHO05D020826 4.7e-27 128.3 153 54.9
Oeu048766.1 Olea europaea HOM05D001727 ORTHO05D001758 4.0e-26 125.2 89 70.8
Lsat_1_v5_gn_3_96441 Lactuca sativa HOM05D005021 ORTHO05D020826 2.6e-25 122.5 239 38.5
SHI31495 Sapria himalayana HOM05D005021 ORTHO05D006824 6.0e-22 111.3 121 47.9
Zm00001eb290420 Zea mays HOM05D005021 ORTHO05D006824 6.0e-22 111.3 98 51.0
HPP92_017168 Vanilla planifolia HOM05D005021 ORTHO05D006824 1.1e-20 107.1 85 65.9
Zm00001eb404970 Zea mays HOM05D005021 ORTHO05D006824 1.4e-18 100.1 113 50.4
SGA_v2.0_scaffold181G39736 Striga asiatica HOM05D003210 ORTHO05D000001 2.3e-18 99.4 177 38.4
Potri.015G123001 Populus trichocarpa HOM05D005021 ORTHO05D006824 3.4e-17 95.5 53 86.8
Psat5g003360 Pisum sativum HOM05D005021 ORTHO05D006824 1.4e-15 90.1 89 50.6
SEGI_05203 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 5.4e-15 88.2 50 88.0
Oeu008861.1 Olea europaea HOM05D005021 ORTHO05D006824 1.0e-13 84.0 54 77.8
Lsat_1_v5_gn_8_50200 Lactuca sativa HOM05D003846 ORTHO05D004726 9.6e-12 77.4 41 92.7
Lsat_1_v5_gn_2_58240 Lactuca sativa HOM05D003297 ORTHO05D020826 2.8e-11 75.9 42 90.5
Psat0s659g0040 Pisum sativum HOM05D005021 ORTHO05D023083 4.4e-09 68.6 138 33.3
Lsat_1_v5_gn_4_123441 Lactuca sativa HOM05D003846 ORTHO05D004726 1.7e-08 66.6 44 77.3
Lsat_1_v5_gn_5_125381 Lactuca sativa HOM05D003846 ORTHO05D020826 1.7e-08 66.6 44 77.3
Lsat_1_v5_gn_5_18841 Lactuca sativa HOM05D003846 ORTHO05D020826 1.7e-08 66.6 44 77.3
Lsat_1_v5_gn_5_43841 Lactuca sativa HOM05D003846 ORTHO05D020826 1.7e-08 66.6 44 77.3
Lsat_1_v5_gn_7_114520 Lactuca sativa HOM05D003846 ORTHO05D004726 1.7e-08 66.6 44 77.3
Medtr3g014450 Medicago truncatula HOM05D005021 ORTHO05D006824 1.9e-07 63.2 54 55.6
Lsat_1_v5_gn_4_70420 Lactuca sativa HOM05D003297 ORTHO05D020826 2.4e-07 62.8 43 74.4
Psat1g136920 Pisum sativum HOM05D005021 ORTHO05D023083 4.2e-07 62.0 56 50.0
Psat2g014320 Pisum sativum HOM05D005021 ORTHO05D023083 4.2e-07 62.0 56 50.0


User provided reference genes

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