Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g068640.3 Solanum lycopersicum HOM05D003833 ORTHO05D004209 2.2e-146 522.3 277 100.0
Sopen02g017810 Solanum pennellii HOM05D003833 ORTHO05D004209 2.2e-146 522.3 277 100.0
PGSC0003DMG400010441 Solanum tuberosum HOM05D003833 ORTHO05D004209 2.2e-141 505.8 274 97.4
Peaxi162Scf00149g00116 Petunia axillaris HOM05D003833 ORTHO05D004209 1.1e-129 466.8 288 85.1
Nitab4.5_0003379g0050 Nicotiana tabacum HOM05D003833 ORTHO05D004209 5.7e-126 454.5 341 74.8
Nitab4.5_0006282g0020 Nicotiana tabacum HOM05D003833 ORTHO05D004209 2.0e-123 446.0 327 75.8
MSTRG.15651 Avicennia marina HOM05D003833 ORTHO05D004209 2.3e-122 442.6 277 81.9
Migut.K00123 Erythranthe guttata HOM05D003833 ORTHO05D004209 6.6e-122 441.0 276 83.3
CSS0041120 Camellia sinensis var. sinensis HOM05D003833 ORTHO05D004209 1.6e-120 436.4 274 82.8
Dinv08489 Davidia involucrata HOM05D003833 ORTHO05D004209 1.6e-120 436.4 277 80.1
Lj1A1105T22 Lonicera japonica HOM05D003833 ORTHO05D004209 1.6e-120 436.4 277 81.9
MSTRG.10798 Avicennia marina HOM05D003833 ORTHO05D004209 2.1e-120 436.0 277 80.9
Lj2A394G34 Lonicera japonica HOM05D003833 ORTHO05D004209 4.0e-119 431.8 274 81.4
DCAR_020545 Daucus carota HOM05D003833 ORTHO05D004209 3.4e-118 428.7 272 81.6
Actinidia39173 Actinidia chinensis HOM05D003833 ORTHO05D004209 4.4e-118 428.3 268 82.5
HanXRQChr09g0266491 Helianthus annuus HOM05D003833 ORTHO05D004209 4.4e-118 428.3 277 79.8
Lsat_1_v5_gn_4_129320 Lactuca sativa HOM05D003833 ORTHO05D004209 2.2e-117 426.0 277 79.8
Oeu029492.1 Olea europaea HOM05D003833 ORTHO05D004209 3.7e-117 425.2 281 79.7
SGA_v2.0_scaffold94G28522 Striga asiatica HOM05D003833 ORTHO05D004209 3.7e-117 425.2 274 79.6
FAN05G1327 Fragaria x ananassa HOM05D003833 ORTHO05D004209 1.4e-116 423.3 272 79.4
FAN05G4135 Fragaria x ananassa HOM05D003833 ORTHO05D004209 1.4e-116 423.3 272 79.4
Haze_19732 Corylus avellana HOM05D003833 ORTHO05D004209 5.4e-116 421.4 274 77.7
ECA232G1919 Erigeron canadensis HOM05D003833 ORTHO05D004209 5.4e-116 421.4 272 81.2
FvH4_6g25150 Fragaria vesca HOM05D003833 ORTHO05D004209 9.2e-116 420.6 272 79.0
Cfa016709 Carpinus fangiana HOM05D003833 ORTHO05D004209 1.6e-115 419.9 274 77.0
Manes.09G008001 Manihot esculenta HOM05D003833 ORTHO05D004209 2.7e-115 419.1 274 77.4
FAN02G2058 Fragaria x ananassa HOM05D003833 ORTHO05D004209 7.8e-115 417.5 272 78.3
Aqoxy2G03781 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 1.3e-114 416.8 272 79.0
RcHm_v2.0_Chr1g0334171 Rosa chinensis HOM05D003833 ORTHO05D004209 1.3e-114 416.8 272 78.3
CANSAT64G1401 Cannabis sativa HOM05D003833 ORTHO05D004209 1.7e-114 416.4 271 79.7
Aqoxy2G00325 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 2.3e-114 416.0 272 79.0
COL.COLO4_33945 Corchorus olitorius HOM05D003833 ORTHO05D004209 8.6e-114 414.1 275 80.0
Prupe.7G045500 Prunus persica HOM05D003833 ORTHO05D004209 1.1e-113 413.7 271 77.1
Atru.chr1.1452 Acer truncatum HOM05D003833 ORTHO05D004209 1.5e-113 413.3 272 80.9
TWI53G1459 Tripterygium wilfordii HOM05D003833 ORTHO05D004209 1.5e-113 413.3 272 78.3
TAR623G1635 Trochodendron aralioides HOM05D003833 ORTHO05D004209 1.5e-113 413.3 271 77.5
CiPaw.09G044700 Carya illinoinensis HOM05D003833 ORTHO05D004209 3.3e-113 412.1 272 78.3
Sed0027268 Sechium edule HOM05D003833 ORTHO05D004209 3.3e-113 412.1 275 78.5
Atru.chr1.1464 Acer truncatum HOM05D003833 ORTHO05D004209 5.6e-113 411.4 272 80.5
Ciclev10005607m.g Citrus clementina HOM05D003833 ORTHO05D004209 5.6e-113 411.4 270 79.6
Dinv34388 Davidia involucrata HOM05D003833 ORTHO05D004209 5.6e-113 411.4 294 74.5
EL10Ac3g07192 Beta vulgaris HOM05D003833 ORTHO05D004209 7.3e-113 411.0 272 79.4
FAN14G1808 Fragaria x ananassa HOM05D003833 ORTHO05D004209 7.3e-113 411.0 282 76.2
Lj1g0026826 Lotus japonicus HOM05D003833 ORTHO05D004209 9.5e-113 410.6 271 77.5
MD12G1094200 Malus domestica HOM05D003833 ORTHO05D004209 9.5e-113 410.6 272 77.2
PGR042G2932 Punica granatum HOM05D003833 ORTHO05D004209 9.5e-113 410.6 275 79.3
QL07p007726 Quercus lobata HOM05D003833 ORTHO05D004209 9.5e-113 410.6 271 76.8
Thecc.05G140900 Theobroma cacao HOM05D003833 ORTHO05D004209 1.6e-112 409.8 273 77.3
Cpa.g.sc49.96 Carica papaya HOM05D003833 ORTHO05D004209 4.7e-112 408.3 274 76.6
Sed0017232 Sechium edule HOM05D003833 ORTHO05D004209 1.1e-111 407.1 272 77.9
TPR.G9312 Trifolium pratense HOM05D003833 ORTHO05D004209 1.1e-111 407.1 272 77.2
AUR62030362 Chenopodium quinoa HOM05D003833 ORTHO05D004209 1.4e-111 406.8 272 77.9
Duzib093G1609 Durio zibethinus HOM05D003833 ORTHO05D004209 1.8e-111 406.4 270 78.1
PGR142G2709 Punica granatum HOM05D003833 ORTHO05D004209 1.8e-111 406.4 275 78.9
ClCG04G004210 Citrullus lanatus HOM05D003833 ORTHO05D004209 3.1e-111 405.6 272 77.2
Ca_08401_v3 Cicer arietinum L. HOM05D003833 ORTHO05D004209 4.0e-111 405.2 271 76.8
Hund24632 Selenicereus undatus HOM05D003833 ORTHO05D004209 8.9e-111 404.1 271 76.8
GSVIVG01033588001 Vitis vinifera HOM05D003833 ORTHO05D004209 1.2e-110 403.7 277 74.7
MD14G1084400 Malus domestica HOM05D003833 ORTHO05D004209 1.5e-110 403.3 272 75.4
Gohir.A07G024700 Gossypium hirsutum HOM05D003833 ORTHO05D004209 2.6e-110 402.5 273 76.2
Sc13g0001320 Simmondsia chinensis HOM05D003833 ORTHO05D004209 2.6e-110 402.5 277 77.3
Medtr7g090160 Medicago truncatula HOM05D003833 ORTHO05D004209 7.5e-110 401.0 272 76.1
Sc13g0001340 Simmondsia chinensis HOM05D003833 ORTHO05D004209 9.8e-110 400.6 277 77.6
PSO210G1377 Papaver somniferum HOM05D003833 ORTHO05D004209 1.3e-109 400.2 277 76.5
Potri.006G042600 Populus trichocarpa HOM05D003833 ORTHO05D004209 1.3e-109 400.2 272 76.5
CsaV3_4G027860 Cucumis sativus L. HOM05D003833 ORTHO05D004209 1.7e-109 399.8 272 76.1
MELO3C019039.2 Cucumis melo HOM05D003833 ORTHO05D004209 2.9e-109 399.1 272 75.4
Lalb_Chr14g0365931 Lupinus albus HOM05D003833 ORTHO05D004209 2.9e-109 399.1 271 76.4
VMungo1383G2371 Vigna mungo HOM05D003833 ORTHO05D004209 2.9e-109 399.1 272 75.4
Psat3g078000 Pisum sativum HOM05D003833 ORTHO05D004209 3.7e-109 398.7 271 75.6
Gorai.001G029600 Gossypium raimondii HOM05D003833 ORTHO05D004209 4.9e-109 398.3 273 75.5
Ah.04g151120 Amaranthus hybridus HOM05D003833 ORTHO05D004209 6.4e-109 397.9 273 76.9
Sabra06G0028900 Salix brachista HOM05D003833 ORTHO05D004209 6.4e-109 397.9 272 75.7
PSO832G0079 Papaver somniferum HOM05D003833 ORTHO05D004209 8.3e-109 397.5 277 76.2
Glyma.19G131500 Glycine max HOM05D003833 ORTHO05D004209 1.1e-108 397.1 272 76.1
Phvul.001G124300 Phaseolus vulgaris HOM05D003833 ORTHO05D004209 1.4e-108 396.7 272 74.6
arahy.Tifrunner.gnm1.ann1.C9KHWR Arachis hypogaea HOM05D003833 ORTHO05D004209 1.9e-108 396.4 273 75.1
Gohir.D07G028300 Gossypium hirsutum HOM05D003833 ORTHO05D004209 4.1e-108 395.2 273 74.7
PSO782G0909 Papaver somniferum HOM05D003833 ORTHO05D004209 1.6e-107 393.3 277 74.7
Glyma.03G129100 Glycine max HOM05D003833 ORTHO05D004209 2.7e-107 392.5 272 75.0
Carub.0006s1298 Capsella rubella HOM05D003833 ORTHO05D004209 4.6e-107 391.7 275 74.9
THA.LOC104816595 Tarenaya hassleriana HOM05D003833 ORTHO05D004209 6.0e-107 391.3 277 74.7
AT5G14800 Arabidopsis thaliana HOM05D003833 ORTHO05D004209 1.9e-105 386.3 275 74.2
AL6G25600 Arabidopsis lyrata HOM05D003833 ORTHO05D004209 3.3e-105 385.6 275 73.8
AUR62040845 Chenopodium quinoa HOM05D003833 ORTHO05D004209 5.6e-105 384.8 272 75.4
Sp6g29240 Schrenkiella parvula HOM05D003833 ORTHO05D004209 5.6e-105 384.8 275 73.5
CARHR198510 Cardamine hirsuta HOM05D003833 ORTHO05D004209 7.3e-105 384.4 275 73.5
Thhalv10014353m.g Eutrema salsugineum HOM05D003833 ORTHO05D004209 1.2e-104 383.6 275 73.8
C09p62360 Brassica napus HOM05D003833 ORTHO05D004209 2.8e-104 382.5 273 73.6
BolC9t59073H Brassica oleracea HOM05D003833 ORTHO05D004209 2.8e-104 382.5 273 73.6
A10p23880 Brassica napus HOM05D003833 ORTHO05D004209 6.2e-104 381.3 273 73.6
arahy.Tifrunner.gnm1.ann1.LP5CTB Arachis hypogaea HOM05D003833 ORTHO05D004209 1.1e-103 380.6 303 67.3
BcaB08g36945 Brassica carinata HOM05D003833 ORTHO05D004209 1.1e-103 380.6 273 73.3
BcaC04g19007 Brassica carinata HOM05D003833 ORTHO05D004209 1.1e-103 380.6 273 73.3
vmacro07822 Vaccinium macrocarpon HOM05D003833 ORTHO05D004209 1.8e-103 379.8 367 60.2
Nn7g36480 Nelumbo nucifera HOM05D003833 ORTHO05D004209 2.3e-103 379.4 272 73.9
BraA10t44452Z Brassica rapa HOM05D003833 ORTHO05D004209 5.2e-103 378.3 273 73.3
SHI05043 Sapria himalayana HOM05D003833 ORTHO05D004209 7.6e-102 374.4 268 72.4
Ah.13g077020 Amaranthus hybridus HOM05D003833 ORTHO05D004209 9.9e-102 374.0 286 69.9
MBI13_g29520_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 4.9e-101 371.7 268 72.4
A03p06820 Brassica napus HOM05D003833 ORTHO05D004209 8.4e-101 370.9 272 72.1
BcaB01g05096 Brassica carinata HOM05D003833 ORTHO05D004209 1.4e-100 370.2 272 71.7
C03p07820 Brassica napus HOM05D003833 ORTHO05D004209 1.4e-100 370.2 272 71.7
BolC3t13281H Brassica oleracea HOM05D003833 ORTHO05D004209 1.4e-100 370.2 272 71.7
ATR0721G010 Amborella trichopoda HOM05D003833 ORTHO05D004209 2.4e-100 369.4 268 73.1
Cc06_g18620 Coffea canephora HOM05D003833 ORTHO05D004209 7.1e-100 367.9 256 75.0
HPP92_001015 Vanilla planifolia HOM05D003833 ORTHO05D004209 2.1e-99 366.3 265 70.2
Aa31LG11G14650 Aethionema arabicum HOM05D003833 ORTHO05D004209 2.7e-99 365.9 317 63.4
BraA03t10007Z Brassica rapa HOM05D003833 ORTHO05D004209 7.8e-99 364.4 276 71.0
CDE09G0749 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 7.8e-99 364.4 271 70.8
CDE02G3693 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 2.3e-98 362.8 271 70.1
unitig_26.g8850 Utricularia gibba HOM05D003833 ORTHO05D004209 1.6e-96 356.7 265 72.5
Os01g0948400 Oryza sativa ssp. japonica HOM05D003833 ORTHO05D004209 1.4e-95 353.6 267 70.0
SEGI_35199 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 6.4e-93 344.7 265 65.7
Prupe.7G045400 Prunus persica HOM05D003833 ORTHO05D004209 1.7e-90 336.7 275 62.5
RhsimUnG0217200 Rhododendron simsii HOM05D003833 ORTHO05D004209 5.6e-89 331.6 486 45.7
Rhsim03G0034800 Rhododendron simsii HOM05D003833 ORTHO05D004209 1.6e-88 330.1 486 45.5
MD12G1091800 Malus domestica HOM05D003833 ORTHO05D004209 1.4e-87 327.0 272 62.1
Eucgr.K01625 Eucalyptus grandis HOM05D003833 ORTHO05D004209 3.2e-84 315.8 211 77.3
Zm00001eb141220 Zea mays HOM05D003833 ORTHO05D004209 4.6e-83 312.0 281 60.9
Mapoly0029s0092 Marchantia polymorpha HOM05D003833 ORTHO05D004209 3.6e-80 302.4 265 60.0
AagrBONN_evm.TU.Sc2ySwM_368.1806 Anthoceros agrestis HOM05D003833 ORTHO05D004209 6.2e-80 301.6 263 58.9
AagrBONN_evm.TU.Sc2ySwM_368.156 Anthoceros agrestis HOM05D003833 ORTHO05D004209 1.8e-79 300.1 275 56.4
SMO337G0103 Selaginella moellendorffii HOM05D003833 ORTHO05D004209 2.4e-79 299.7 263 58.9
Pp3c10_15650 Physcomitrium patens HOM05D003833 ORTHO05D004209 2.1e-75 286.6 265 54.7
BolC3t20513H Brassica oleracea HOM05D003833 ORTHO05D004209 1.0e-74 284.3 250 61.2
BolC4t23181H Brassica oleracea HOM05D003833 ORTHO05D004209 6.2e-72 275.0 251 60.6
CBR_g16006 Chara braunii HOM05D003833 ORTHO05D004209 1.1e-71 274.2 276 51.8
BcaC02g10661 Brassica carinata HOM05D003833 ORTHO05D004209 1.4e-71 273.9 254 61.0
BolC4t24169H Brassica oleracea HOM05D003833 ORTHO05D004209 9.0e-71 271.2 255 60.8
C03p82400 Brassica napus HOM05D003833 ORTHO05D004209 2.6e-70 269.6 277 55.2
C03p82420 Brassica napus HOM05D003833 ORTHO05D004209 3.4e-70 269.2 278 54.7
Cre03.g154550 Chlamydomonas reinhardtii HOM05D003833 ORTHO05D004209 1.4e-68 263.8 269 52.4
BcaC06g33558 Brassica carinata HOM05D003833 ORTHO05D004209 1.9e-68 263.5 277 54.9
BcaC02g11392 Brassica carinata HOM05D003833 ORTHO05D004209 5.5e-68 261.9 278 54.7
C04p16080 Brassica napus HOM05D003833 ORTHO05D004209 1.6e-67 260.4 278 54.7
Dinv03868 Davidia involucrata HOM05D003833 ORTHO05D004209 4.6e-67 258.8 164 80.5
FAN10G2875 Fragaria x ananassa HOM05D005759 ORTHO05D007172 4.6e-67 258.8 295 55.6
Duzib056G0002 Durio zibethinus HOM05D003833 ORTHO05D004209 3.3e-65 252.7 255 58.8
BolC6t37672H Brassica oleracea HOM05D003833 ORTHO05D004209 6.9e-63 245.0 219 62.1
Rhsim13G0081800 Rhododendron simsii HOM05D003833 ORTHO05D004209 1.8e-58 230.3 272 51.8
C04p26360 Brassica napus HOM05D003833 ORTHO05D004209 2.3e-58 229.9 252 54.0
C06p25140 Brassica napus HOM05D003833 ORTHO05D004209 3.0e-58 229.6 276 51.4
RcHm_v2.0_Chr2g0125021 Rosa chinensis HOM05D003833 ORTHO05D004209 7.4e-57 224.9 147 75.5
MCO05G631 Micromonas commoda HOM05D003833 ORTHO05D004209 4.8e-56 222.2 266 46.6
BcaC02g10122 Brassica carinata HOM05D003833 ORTHO05D004209 2.0e-49 200.3 247 47.4
BcaC08g44899 Brassica carinata HOM05D003833 ORTHO05D004209 2.8e-48 196.4 267 46.8
BolC3t20511H Brassica oleracea HOM05D003833 ORTHO05D004209 1.1e-47 194.5 131 74.8
SEGI_40635 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 8.5e-45 184.9 137 68.6
Eucgr.K01616 Eucalyptus grandis HOM05D003833 ORTHO05D004209 2.5e-44 183.3 133 73.7
MBI03_g45406_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 7.9e-43 178.3 148 64.2
MD12G1094100 Malus domestica HOM05D003833 ORTHO05D004209 1.5e-41 174.1 138 64.5
FAN06G3481 Fragaria x ananassa HOM05D003833 ORTHO05D004209 7.4e-41 171.8 164 60.4
MCO04G012 Micromonas commoda HOM05D003833 ORTHO05D004209 1.3e-40 171.0 413 33.7
PRCOL_00005946 Prasinoderma coloniale HOM05D003833 ORTHO05D004209 4.8e-40 169.1 228 46.9
TAR623G0480 Trochodendron aralioides HOM05D003833 ORTHO05D004209 6.5e-37 158.7 96 84.4
MBI03_g17131_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 1.6e-35 154.1 130 63.1
MBI09_g02151_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 5.2e-34 149.1 120 67.5
Nn1g08168 Nelumbo nucifera HOM05D003833 ORTHO05D004209 1.2e-30 137.9 117 63.2
Haze_26946 Corylus avellana HOM05D003833 ORTHO05D004209 4.2e-28 129.4 257 33.1
Medtr1046s0010 Medicago truncatula HOM05D003833 ORTHO05D004209 2.3e-26 123.6 263 32.3
RcHm_v2.0_Chr2g0125031 Rosa chinensis HOM05D003833 ORTHO05D004209 2.0e-25 120.6 136 53.7
FvH4_7g06311 Fragaria vesca HOM05D003833 ORTHO05D004209 4.1e-23 112.8 73 83.6
Haze_27356 Corylus avellana HOM05D003833 ORTHO05D004209 1.2e-22 111.3 284 28.9
Aqoxy3G03819 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 3.2e-20 103.2 150 45.3
BcaNung06051 Brassica carinata HOM05D003833 ORTHO05D004209 1.2e-17 94.7 113 46.9
BcaC02g08088 Brassica carinata HOM05D003833 ORTHO05D004209 3.4e-17 93.2 52 90.4
Oeu050503.1 Olea europaea HOM05D003833 ORTHO05D004209 3.4e-17 93.2 72 70.8
C04p17110 Brassica napus HOM05D003833 ORTHO05D004209 4.4e-17 92.8 52 88.5
BolC4t23262H Brassica oleracea HOM05D003833 ORTHO05D004209 4.4e-17 92.8 52 88.5
BolC8t47752H Brassica oleracea HOM05D003833 ORTHO05D004209 9.8e-17 91.7 52 88.5
BcaC02g11310 Brassica carinata HOM05D003833 ORTHO05D004209 2.2e-16 90.5 52 88.5
CBR_g37250 Chara braunii HOM05D003833 ORTHO05D004209 3.7e-16 89.7 69 60.9
MD12G1091600 Malus domestica HOM05D003833 ORTHO05D004209 8.3e-16 88.6 63 68.3
SGA_v2.0_scaffold44G16671 Striga asiatica HOM05D003833 ORTHO05D004209 1.8e-15 87.4 70 62.9
C08p09060 Brassica napus HOM05D003833 ORTHO05D004209 2.4e-15 87.0 50 86.0
MBI10_g20272_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 2.7e-14 83.6 59 72.9
FvH4_7g06312 Fragaria vesca HOM05D003833 ORTHO05D004209 4.5e-14 82.8 53 69.8
CAN.G102.1 Capsicum annuum HOM05D000541 ORTHO05D000137 5.9e-14 82.4 55 76.4
BolC4t24812H Brassica oleracea HOM05D003833 ORTHO05D004209 7.7e-14 82.0 78 55.1
Gohir.D06G163101 Gossypium hirsutum HOM05D002585 ORTHO05D002917 5.0e-13 79.3 64 60.9
Gorai.011G171800 Gossypium raimondii HOM05D002585 ORTHO05D002917 5.0e-13 79.3 64 60.9
Gohir.D13G165733 Gossypium hirsutum HOM05D002585 ORTHO05D002917 5.6e-12 75.9 64 57.8
Gorai.008G052500 Gossypium raimondii HOM05D002585 ORTHO05D002917 9.5e-12 75.1 61 62.3
SalBow6G3161 Salvia bowleyana HOM05D021775 ORTHO05D004209 1.8e-07 60.8 40 75.0
PGSC0003DMG400015750 Solanum tuberosum HOM05D008774 ORTHO05D010951 2.0e-06 57.4 34 85.3


User provided reference genes

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