Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g068580.1 Solanum lycopersicum HOM05D005294 ORTHO05D006720 2.5e-262 908.3 469 100.0
Sopen02g017740 Solanum pennellii HOM05D005294 ORTHO05D006720 1.0e-244 849.7 448 97.1
PGSC0003DMG400033362 Solanum tuberosum HOM05D005294 ORTHO05D006720 1.7e-223 779.2 463 88.6
Nitab4.5_0004011g0060 Nicotiana tabacum HOM05D005294 ORTHO05D006720 3.0e-207 725.3 462 81.8
CAN.G142.7 Capsicum annuum HOM05D005294 ORTHO05D006720 1.1e-206 723.4 462 82.3
Nitab4.5_0001492g0020 Nicotiana tabacum HOM05D005294 ORTHO05D006720 1.5e-203 713.0 462 80.5
Peaxi162Scf01468g00004 Petunia axillaris HOM05D005294 ORTHO05D006720 9.2e-193 677.2 455 78.2
Lj7C671G8 Lonicera japonica HOM05D005294 ORTHO05D006720 3.4e-171 605.5 463 67.2
Dinv36732 Davidia involucrata HOM05D005294 ORTHO05D006720 7.1e-169 597.8 463 67.4
MSTRG.19532 Avicennia marina HOM05D005294 ORTHO05D006720 1.7e-162 576.6 456 63.2
CSS0007070 Camellia sinensis var. sinensis HOM05D005294 ORTHO05D006720 4.2e-161 572.0 463 63.1
Rhsim05G0031400 Rhododendron simsii HOM05D005294 ORTHO05D006720 4.2e-161 572.0 463 62.4
CSS0004577 Camellia sinensis var. sinensis HOM05D005294 ORTHO05D006720 7.9e-160 567.8 463 62.6
vmacro10822 Vaccinium macrocarpon HOM05D005294 ORTHO05D006720 4.3e-158 562.0 495 59.0
Actinidia39748 Actinidia chinensis HOM05D005294 ORTHO05D006720 7.4e-158 561.2 463 61.1
DCAR_012006 Daucus carota HOM05D005294 ORTHO05D006720 1.3e-157 560.5 462 61.7
Ciclev10008203m.g Citrus clementina HOM05D005294 ORTHO05D006720 2.6e-155 552.7 464 60.8
Haze_25869 Corylus avellana HOM05D005294 ORTHO05D006720 3.4e-155 552.4 464 59.7
Potri.013G068200 Populus trichocarpa HOM05D005294 ORTHO05D006720 2.2e-154 549.7 461 61.0
Cpa.g.sc32.101 Carica papaya HOM05D005294 ORTHO05D006720 1.6e-152 543.5 458 59.2
Atru.chr7.1522 Acer truncatum HOM05D005294 ORTHO05D006720 2.1e-152 543.1 463 59.4
TWI34G0876 Tripterygium wilfordii HOM05D005294 ORTHO05D006720 3.5e-152 542.3 463 59.6
Lsat_1_v5_gn_5_146040 Lactuca sativa HOM05D005294 ORTHO05D006720 6.0e-152 541.6 457 58.9
Eucgr.C03688 Eucalyptus grandis HOM05D005294 ORTHO05D006720 1.0e-151 540.8 463 59.4
CiPaw.03G219800 Carya illinoinensis HOM05D005294 ORTHO05D006720 6.7e-151 538.1 464 57.5
Sc08g0008210 Simmondsia chinensis HOM05D005294 ORTHO05D006720 8.7e-151 537.7 466 57.9
Cc06_g10960 Coffea canephora HOM05D005294 ORTHO05D006720 1.9e-150 536.6 437 63.6
GSVIVG01015248001 Vitis vinifera HOM05D005294 ORTHO05D006720 9.7e-150 534.3 460 58.0
CANSAT64G1758 Cannabis sativa HOM05D005294 ORTHO05D006720 1.6e-149 533.5 465 58.9
QL02p063470 Quercus lobata HOM05D005294 ORTHO05D006720 4.8e-149 531.9 464 57.8
RcHm_v2.0_Chr2g0092581 Rosa chinensis HOM05D005294 ORTHO05D006720 4.8e-149 531.9 458 58.7
COL.COLO4_18242 Corchorus olitorius HOM05D005294 ORTHO05D006720 1.1e-148 530.8 464 58.0
Gohir.D06G069100 Gossypium hirsutum HOM05D005294 ORTHO05D006720 1.4e-148 530.4 465 58.9
Gorai.010G080700 Gossypium raimondii HOM05D005294 ORTHO05D006720 1.4e-148 530.4 465 58.9
Manes.16G105100 Manihot esculenta HOM05D005294 ORTHO05D006720 1.8e-148 530.0 462 58.2
TAR624G1381 Trochodendron aralioides HOM05D005294 ORTHO05D006720 1.8e-148 530.0 463 59.0
PGR102G3363 Punica granatum HOM05D005294 ORTHO05D006720 5.3e-148 528.5 467 57.2
TWI63G0491 Tripterygium wilfordii HOM05D005294 ORTHO05D006720 2.0e-147 526.6 461 58.8
Gohir.A06G070500 Gossypium hirsutum HOM05D005294 ORTHO05D006720 3.4e-147 525.8 465 58.5
HanXRQChr12g0355321 Helianthus annuus HOM05D005294 ORTHO05D006720 3.4e-147 525.8 463 57.2
Thecc.09G094300 Theobroma cacao HOM05D005294 ORTHO05D006720 5.9e-147 525.0 447 60.0
LjContig00141g0021499 Lotus japonicus HOM05D005294 ORTHO05D006720 2.2e-146 523.1 463 57.7
Sabra13G0059500 Salix brachista HOM05D005294 ORTHO05D006720 2.9e-146 522.7 513 54.6
Duzib168G2227 Durio zibethinus HOM05D005294 ORTHO05D006720 8.5e-146 521.2 446 59.4
Prupe.7G214700 Prunus persica HOM05D005294 ORTHO05D006720 1.1e-145 520.8 461 57.5
MD15G1202500 Malus domestica HOM05D005294 ORTHO05D006720 1.9e-145 520.0 473 56.0
Cfa003134 Carpinus fangiana HOM05D005294 ORTHO05D006720 2.5e-145 519.6 464 57.1
MD02G1072700 Malus domestica HOM05D005294 ORTHO05D006720 7.2e-145 518.1 465 57.0
FvH4_1g06810 Fragaria vesca HOM05D005294 ORTHO05D006720 7.9e-144 514.6 467 56.7
ECA234G1346 Erigeron canadensis HOM05D005294 ORTHO05D006720 2.3e-143 513.1 461 55.7
Glyma.02G250900 Glycine max HOM05D005294 ORTHO05D006720 2.3e-143 513.1 463 57.9
Glyma.14G065800 Glycine max HOM05D005294 ORTHO05D006720 2.0e-142 510.0 463 57.7
FAN26G2354 Fragaria x ananassa HOM05D005294 ORTHO05D006720 3.3e-142 509.2 459 57.5
Migut.J00438 Erythranthe guttata HOM05D005294 ORTHO05D006720 1.3e-141 507.3 459 56.9
Phvul.008G230500 Phaseolus vulgaris HOM05D005294 ORTHO05D006720 1.3e-141 507.3 463 56.6
FAN23G1873 Fragaria x ananassa HOM05D005294 ORTHO05D006720 2.2e-141 506.5 467 56.3
arahy.Tifrunner.gnm1.ann1.CWN4E9 Arachis hypogaea HOM05D005294 ORTHO05D006720 1.8e-140 503.4 469 55.2
arahy.Tifrunner.gnm1.ann1.T94LMP Arachis hypogaea HOM05D005294 ORTHO05D006720 2.4e-140 503.1 469 55.2
THA.LOC104811733 Tarenaya hassleriana HOM05D005294 ORTHO05D006720 3.1e-140 502.7 464 55.2
BcaC01g06444 Brassica carinata HOM05D005294 ORTHO05D006720 3.4e-139 499.2 460 53.3
Lalb_Chr18g0053011 Lupinus albus HOM05D005294 ORTHO05D006720 5.9e-139 498.4 467 54.8
Medtr5g080780 Medicago truncatula HOM05D005294 ORTHO05D006720 1.3e-138 497.3 456 56.6
A03p13220 Brassica napus HOM05D005294 ORTHO05D006720 3.8e-138 495.7 462 53.0
BolC3t13987H Brassica oleracea HOM05D005294 ORTHO05D006720 5.0e-138 495.4 462 53.5
Lalb_Chr15g0084501 Lupinus albus HOM05D005294 ORTHO05D006720 6.5e-138 495.0 461 56.2
BcaB01g04417 Brassica carinata HOM05D005294 ORTHO05D006720 1.1e-137 494.2 463 53.1
TPR.G25848 Trifolium pratense HOM05D005294 ORTHO05D006720 1.1e-137 494.2 451 56.8
AL8G32570 Arabidopsis lyrata HOM05D005294 ORTHO05D006720 1.4e-137 493.8 462 52.4
BraA03t10634Z Brassica rapa HOM05D005294 ORTHO05D006720 7.2e-137 491.5 462 52.4
C03p15490 Brassica napus HOM05D005294 ORTHO05D006720 9.4e-137 491.1 462 53.0
BcaB08g36064 Brassica carinata HOM05D005294 ORTHO05D006720 1.6e-136 490.3 465 52.7
Carub.0008s1722 Capsella rubella HOM05D005294 ORTHO05D006720 2.1e-136 490.0 460 52.4
Thhalv10013465m.g Eutrema salsugineum HOM05D005294 ORTHO05D006720 3.6e-136 489.2 459 52.5
CARHR270490 Cardamine hirsuta HOM05D005294 ORTHO05D006720 4.7e-136 488.8 461 52.7
BraA10t43499Z Brassica rapa HOM05D005294 ORTHO05D006720 6.1e-136 488.4 461 53.6
PSO210G3043 Papaver somniferum HOM05D005294 ORTHO05D006720 7.9e-136 488.0 459 56.0
AT5G56740 Arabidopsis thaliana HOM05D005294 ORTHO05D006720 1.4e-135 487.3 462 52.6
Hund05510 Selenicereus undatus HOM05D005294 ORTHO05D006720 3.9e-135 485.7 468 54.3
SGA_v2.0_scaffold62G21576 Striga asiatica HOM05D005294 ORTHO05D006720 8.8e-135 484.6 491 52.3
Aqoxy7G03926 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 1.5e-134 483.8 468 55.3
ClCG11G001870 Citrullus lanatus HOM05D005294 ORTHO05D006720 1.5e-134 483.8 466 54.5
A10p14080 Brassica napus HOM05D005294 ORTHO05D006720 2.0e-134 483.4 461 53.1
Psat2g038680 Pisum sativum HOM05D005294 ORTHO05D006720 2.0e-134 483.4 461 54.4
VMungo0647G0234 Vigna mungo HOM05D005294 ORTHO05D006720 3.3e-134 482.6 463 55.7
CsaV3_2G001600 Cucumis sativus L. HOM05D005294 ORTHO05D006720 4.8e-133 478.8 466 54.3
Sp6g18490 Schrenkiella parvula HOM05D005294 ORTHO05D006720 4.8e-133 478.8 459 51.9
PSO210G1233 Papaver somniferum HOM05D005294 ORTHO05D006720 1.1e-132 477.6 460 55.0
FAN19G0312 Fragaria x ananassa HOM05D005294 ORTHO05D006720 3.1e-132 476.1 429 57.1
Sed0020374 Sechium edule HOM05D005294 ORTHO05D006720 2.6e-131 473.0 459 54.2
FAN26G0700 Fragaria x ananassa HOM05D005294 ORTHO05D006720 3.5e-131 472.6 461 54.0
unitig_26.g9161 Utricularia gibba HOM05D005294 ORTHO05D006720 1.1e-126 457.6 488 51.2
MBI04_g06995_MAGBIO Magnolia biondii HOM05D005294 ORTHO05D006720 1.3e-122 444.1 457 51.4
Ah.15g091540 Amaranthus hybridus HOM05D005294 ORTHO05D006720 2.2e-122 443.4 464 49.6
AUR62008827 Chenopodium quinoa HOM05D005294 ORTHO05D006720 4.2e-121 439.1 464 49.1
AUR62025414 Chenopodium quinoa HOM05D005294 ORTHO05D006720 2.3e-119 433.3 464 48.3
EL10Ac7g17721 Beta vulgaris HOM05D005294 ORTHO05D006720 3.0e-119 433.0 423 52.5
Aqoxy4G01946 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 8.8e-119 431.4 456 51.1
Aa31LG3G12690 Aethionema arabicum HOM05D005294 ORTHO05D006720 2.6e-118 429.9 463 47.7
Ca_05904_v3 Cicer arietinum L. HOM05D005294 ORTHO05D006720 1.4e-116 424.1 419 53.7
BcaC04g20057 Brassica carinata HOM05D005294 ORTHO05D006720 1.3e-114 417.5 445 47.2
HPP92_009085 Vanilla planifolia HOM05D005294 ORTHO05D006720 2.5e-113 413.3 458 48.5
Os09g0347800 Oryza sativa ssp. japonica HOM05D005294 ORTHO05D006720 4.8e-109 399.1 455 47.0
Haze_25870 Corylus avellana HOM05D005294 ORTHO05D006720 2.2e-101 373.6 420 48.8
Zm00001eb310550 Zea mays HOM05D005294 ORTHO05D006720 4.9e-101 372.5 452 45.8
Nn6g35397 Nelumbo nucifera HOM05D005294 ORTHO05D006720 2.3e-95 353.6 296 60.8
ATR0705G179 Amborella trichopoda HOM05D005294 ORTHO05D006720 5.4e-92 342.4 429 44.3
SGA_v2.0_scaffold10G05199 Striga asiatica HOM05D005294 ORTHO05D006720 4.7e-88 329.3 535 39.3
C09p48310 Brassica napus HOM05D005294 ORTHO05D006720 8.9e-87 325.1 365 45.2
BolC9t57681H Brassica oleracea HOM05D005294 ORTHO05D006720 8.9e-87 325.1 365 45.2
MELO3C004615.2 Cucumis melo HOM05D005294 ORTHO05D006720 2.1e-80 303.9 279 56.3
SEGI_34717 Sequoiadendron giganteum HOM05D005294 ORTHO05D006720 1.4e-79 301.2 484 36.6
CDE09G1011 Ceratophyllum demersum HOM05D005294 ORTHO05D006720 8.6e-74 282.0 435 37.0
SHI02790 Sapria himalayana HOM05D005294 ORTHO05D006720 4.0e-71 273.1 467 39.0
Oeu052126.1 Olea europaea HOM05D005294 ORTHO05D006720 1.2e-70 271.6 315 50.5
Pp3c15_19200 Physcomitrium patens HOM05D005294 ORTHO05D006720 1.3e-61 241.5 497 32.2
Mapoly0079s0005 Marchantia polymorpha HOM05D005294 ORTHO05D006720 1.1e-57 228.4 514 31.3
MBI14_g43979_MAGBIO Magnolia biondii HOM05D005294 ORTHO05D006720 2.0e-46 191.0 192 51.6
Actinidia25279 Actinidia chinensis HOM05D005294 ORTHO05D006720 1.5e-41 174.9 351 34.8
CBR_g45363 Chara braunii HOM05D005294 ORTHO05D006720 2.8e-40 170.6 392 29.8
Zm00001eb171070 Zea mays HOM05D005294 ORTHO05D006720 4.5e-38 163.3 161 50.9
Zm00001eb301910 Zea mays HOM05D005294 ORTHO05D006720 1.7e-37 161.4 161 50.3
Aa31LG3G12580 Aethionema arabicum HOM05D005294 ORTHO05D006720 1.9e-33 147.9 126 51.6
Aa31LG3G12620 Aethionema arabicum HOM05D005294 ORTHO05D006720 1.9e-33 147.9 126 51.6
Aa31sc2040G10 Aethionema arabicum HOM05D005294 ORTHO05D006720 2.8e-32 144.1 123 51.2
RcHm_v2.0_Chr2g0093931 Rosa chinensis HOM05D005294 ORTHO05D006720 5.3e-31 139.8 125 55.2
PRCOL_00004982 Prasinoderma coloniale HOM05D005294 ORTHO05D006720 4.5e-30 136.7 435 25.5
RcHm_v2.0_Chr2g0093921 Rosa chinensis HOM05D005294 ORTHO05D006720 1.0e-29 135.6 115 57.4
Aa31LG3G12670 Aethionema arabicum HOM05D004235 ORTHO05D005157 6.5e-29 132.9 352 28.4
Aqoxy4G01950 Aquilegia oxysepala HOM05D002435 ORTHO05D002550 8.5e-29 132.5 217 41.0
MCO15G657 Micromonas commoda HOM05D005294 ORTHO05D006720 1.4e-28 131.7 449 24.3
CARHR271620 Cardamine hirsuta HOM05D005294 ORTHO05D006720 6.1e-27 126.3 105 51.4
Cre03.g186500 Chlamydomonas reinhardtii HOM05D005294 ORTHO05D006720 3.4e-22 110.5 275 29.8
SMO281G0026 Selaginella moellendorffii HOM05D005294 ORTHO05D006720 4.8e-16 90.1 116 40.5
SGA_v2.0_scaffold194G40752 Striga asiatica HOM05D005294 ORTHO05D006720 5.9e-14 83.2 71 53.5
SMO244G0078 Selaginella moellendorffii HOM05D005294 ORTHO05D006720 7.7e-14 82.8 170 32.9
Aqoxy4G01951 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 1.6e-11 75.1 68 50.0
Cc06_g10970 Coffea canephora HOM05D005294 ORTHO05D038989 1.4e-10 72.0 40 80.0
Zm00001eb382850 Zea mays HOM05D005294 ORTHO05D006720 6.7e-10 69.7 88 44.3
Zm00001eb383990 Zea mays HOM05D005294 ORTHO05D006720 1.1e-09 68.9 88 44.3
GSVIVG01027373001 Vitis vinifera HOM05D005294 ORTHO05D006720 1.4e-07 62.0 39 61.5
GSVIVG01038419001 Vitis vinifera HOM05D005294 ORTHO05D008307 3.1e-07 60.8 45 57.8


User provided reference genes

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