Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g068270.4 Solanum lycopersicum HOM05D006312 ORTHO05D007843 2.7e-115 418.7 216 100.0
Sopen02g017370 Solanum pennellii HOM05D006312 ORTHO05D007843 5.0e-93 344.7 182 97.8
CAN.G883.25 Capsicum annuum HOM05D006312 ORTHO05D007843 1.7e-72 276.6 186 79.6
Nitab4.5_0003878g0040 Nicotiana tabacum HOM05D006312 ORTHO05D007843 3.6e-67 258.8 210 66.2
Nitab4.5_0003141g0020 Nicotiana tabacum HOM05D006312 ORTHO05D007843 8.3e-64 247.7 180 72.8
Peaxi162Scf00981g00214 Petunia axillaris HOM05D006312 ORTHO05D007843 3.7e-56 222.2 185 69.2
Cc07_g12330 Coffea canephora HOM05D006312 ORTHO05D007843 5.4e-55 218.4 191 66.0
Oeu024786.1 Olea europaea HOM05D006312 ORTHO05D007843 6.6e-53 211.5 197 62.9
MSTRG.3652 Avicennia marina HOM05D006312 ORTHO05D007843 1.6e-51 206.8 136 76.5
CSS0005301 Camellia sinensis var. sinensis HOM05D006312 ORTHO05D007843 1.1e-50 204.1 189 62.4
Migut.K01209 Erythranthe guttata HOM05D006312 ORTHO05D007843 2.3e-50 203.0 179 64.8
CSS0026635 Camellia sinensis var. sinensis HOM05D006312 ORTHO05D007843 5.2e-50 201.8 189 61.9
SGA_v2.0_scaffold132G34566 Striga asiatica HOM05D006312 ORTHO05D007843 4.4e-49 198.7 149 69.1
Rhsim08G0025300 Rhododendron simsii HOM05D006312 ORTHO05D007843 1.7e-48 196.8 139 72.7
Actinidia28758 Actinidia chinensis HOM05D006312 ORTHO05D007843 2.2e-48 196.4 193 59.1
HanXRQChr16g0532211 Helianthus annuus HOM05D006312 ORTHO05D007843 3.8e-48 195.7 116 79.3
SalBow5G1176 Salvia bowleyana HOM05D006312 ORTHO05D007843 6.4e-48 194.9 120 75.8
ECA246G0189 Erigeron canadensis HOM05D006312 ORTHO05D007843 1.9e-47 193.4 114 79.8
Manes.02G117611 Manihot esculenta HOM05D006312 ORTHO05D007843 7.1e-47 191.4 142 69.7
DCAR_016700 Daucus carota HOM05D006312 ORTHO05D007843 9.2e-47 191.0 186 57.5
TPR.G19116 Trifolium pratense HOM05D006312 ORTHO05D007843 9.2e-47 191.0 135 69.6
arahy.Tifrunner.gnm1.ann1.Y34PHS Arachis hypogaea HOM05D006312 ORTHO05D007843 1.2e-46 190.7 146 67.1
arahy.Tifrunner.gnm1.ann1.YWP2KZ Arachis hypogaea HOM05D006312 ORTHO05D007843 1.2e-46 190.7 171 61.4
COL.COLO4_27421 Corchorus olitorius HOM05D006312 ORTHO05D007843 2.1e-46 189.9 150 66.0
Eucgr.J02573 Eucalyptus grandis HOM05D006312 ORTHO05D007843 2.1e-46 189.9 135 72.6
Hund13396 Selenicereus undatus HOM05D006312 ORTHO05D007843 2.1e-46 189.9 153 65.4
Actinidia35692 Actinidia chinensis HOM05D006312 ORTHO05D007843 2.7e-46 189.5 187 57.8
VMungo1383G0261 Vigna mungo HOM05D006312 ORTHO05D007843 6.0e-46 188.3 156 64.1
Ca_08638_v3 Cicer arietinum L. HOM05D006312 ORTHO05D007843 7.8e-46 188.0 137 68.6
Hma1.2p1_0034F.1_g021580 Hydrangea macrophylla HOM05D006312 ORTHO05D007843 1.0e-45 187.6 185 61.1
MD02G1107600 Malus domestica HOM05D006312 ORTHO05D007843 1.3e-45 187.2 143 66.4
PGR102G2008 Punica granatum HOM05D006312 ORTHO05D007843 1.7e-45 186.8 147 68.0
Sabra16G0308500 Salix brachista HOM05D006312 ORTHO05D007843 1.7e-45 186.8 188 59.0
Sed0011609 Sechium edule HOM05D006312 ORTHO05D007843 1.7e-45 186.8 160 61.2
Thecc.05G202100 Theobroma cacao HOM05D006312 ORTHO05D007843 2.3e-45 186.4 150 66.0
Phvul.001G155800 Phaseolus vulgaris HOM05D006312 ORTHO05D007843 3.0e-45 186.0 137 68.6
Lsat_1_v5_gn_3_68340 Lactuca sativa HOM05D006312 ORTHO05D007843 5.1e-45 185.3 151 62.3
Psat3g060840 Pisum sativum HOM05D006312 ORTHO05D007843 6.6e-45 184.9 137 67.2
Glyma.03G158200 Glycine max HOM05D006312 ORTHO05D007843 1.5e-44 183.7 180 57.8
Gorai.013G007100 Gossypium raimondii HOM05D006312 ORTHO05D007843 1.5e-44 183.7 127 69.3
Potri.001G455900 Populus trichocarpa HOM05D006312 ORTHO05D007843 1.5e-44 183.7 188 58.0
Cpa.g.sc178.37 Carica papaya HOM05D006312 ORTHO05D007843 1.9e-44 183.3 135 68.1
Prupe.7G188400 Prunus persica HOM05D006312 ORTHO05D007843 2.5e-44 183.0 171 57.3
Atru.chr2.1887 Acer truncatum HOM05D006312 ORTHO05D007843 3.3e-44 182.6 150 62.0
Gohir.A13G006700 Gossypium hirsutum HOM05D006312 ORTHO05D007843 4.3e-44 182.2 189 58.2
RcHm_v2.0_Chr2g0096661 Rosa chinensis HOM05D006312 ORTHO05D007843 5.6e-44 181.8 140 66.4
Aqoxy6G03048 Aquilegia oxysepala HOM05D006312 ORTHO05D007843 7.3e-44 181.4 141 65.2
CANSAT21G2119 Cannabis sativa HOM05D006312 ORTHO05D007843 7.3e-44 181.4 145 64.1
TWI34G0319 Tripterygium wilfordii HOM05D006312 ORTHO05D007843 9.6e-44 181.0 135 68.1
ATR0605G230 Amborella trichopoda HOM05D006312 ORTHO05D007843 1.6e-43 180.3 134 64.9
Gohir.D13G006900 Gossypium hirsutum HOM05D006312 ORTHO05D007843 1.6e-43 180.3 189 57.7
Glyma.19G160500 Glycine max HOM05D006312 ORTHO05D007843 4.7e-43 178.7 185 54.6
TAR376G0343 Trochodendron aralioides HOM05D006312 ORTHO05D007843 4.7e-43 178.7 159 59.7
Ciclev10012864m.g Citrus clementina HOM05D006312 ORTHO05D007843 6.2e-43 178.3 195 52.3
EL10Ac2g02752 Beta vulgaris HOM05D006312 ORTHO05D007843 8.1e-43 177.9 190 55.8
Lj1g0018795 Lotus japonicus HOM05D006312 ORTHO05D007843 8.1e-43 177.9 118 72.9
MBI04_g11525_MAGBIO Magnolia biondii HOM05D006312 ORTHO05D007843 1.4e-42 177.2 194 54.6
Potri.011G146200 Populus trichocarpa HOM05D006312 ORTHO05D007843 1.4e-42 177.2 111 73.9
Sc10g0004590 Simmondsia chinensis HOM05D006312 ORTHO05D007843 1.8e-42 176.8 193 52.8
AUR62031725 Chenopodium quinoa HOM05D006312 ORTHO05D007843 2.4e-42 176.4 116 74.1
MELO3C007014.2 Cucumis melo HOM05D006312 ORTHO05D007843 2.4e-42 176.4 139 61.9
THA.LOC104808852 Tarenaya hassleriana HOM05D006312 ORTHO05D007843 6.9e-42 174.9 147 64.6
AT3G51510 Arabidopsis thaliana HOM05D006312 ORTHO05D007843 1.2e-41 174.1 139 62.6
AUR62032612 Chenopodium quinoa HOM05D006312 ORTHO05D007843 1.2e-41 174.1 130 68.5
BcaNung00380 Brassica carinata HOM05D006312 ORTHO05D007843 2.0e-41 173.3 138 63.8
A01p23400 Brassica napus HOM05D006312 ORTHO05D007843 2.0e-41 173.3 138 63.8
C01p29030 Brassica napus HOM05D006312 ORTHO05D007843 2.0e-41 173.3 138 64.5
BolC1t02835H Brassica oleracea HOM05D006312 ORTHO05D007843 2.0e-41 173.3 138 64.5
BraA01t02247Z Brassica rapa HOM05D006312 ORTHO05D007843 2.0e-41 173.3 138 63.8
QL06p053470 Quercus lobata HOM05D006312 ORTHO05D007843 2.0e-41 173.3 183 53.0
Zm00001eb291320 Zea mays HOM05D006312 ORTHO05D007843 2.6e-41 172.9 142 64.8
AL5G31950 Arabidopsis lyrata HOM05D006312 ORTHO05D007843 4.4e-41 172.2 139 61.9
THA.LOC104815359 Tarenaya hassleriana HOM05D006312 ORTHO05D007843 5.8e-41 171.8 115 70.4
BcaB01g00508 Brassica carinata HOM05D006312 ORTHO05D007843 7.6e-41 171.4 140 62.9
ClCG01G025710 Citrullus lanatus HOM05D006312 ORTHO05D007843 9.9e-41 171.0 155 56.8
C08p26760 Brassica napus HOM05D006312 ORTHO05D007843 1.3e-40 170.6 144 61.1
BolC8t50289H Brassica oleracea HOM05D006312 ORTHO05D007843 1.3e-40 170.6 144 61.1
CsaV3_6G052950 Cucumis sativus L. HOM05D006312 ORTHO05D007843 1.3e-40 170.6 177 52.0
Carub.0005s1789 Capsella rubella HOM05D006312 ORTHO05D007843 2.2e-40 169.9 138 61.6
Cfa007119 Carpinus fangiana HOM05D006312 ORTHO05D007843 2.2e-40 169.9 194 51.5
Dinv24398 Davidia involucrata HOM05D006312 ORTHO05D007843 2.2e-40 169.9 123 68.3
Dinv28290 Davidia involucrata HOM05D006312 ORTHO05D007843 2.2e-40 169.9 123 68.3
A09p44660 Brassica napus HOM05D006312 ORTHO05D007843 2.9e-40 169.5 140 62.1
CARHR161090 Cardamine hirsuta HOM05D006312 ORTHO05D007843 2.9e-40 169.5 153 57.5
PSO675G2564 Papaver somniferum HOM05D006312 ORTHO05D007843 2.9e-40 169.5 166 53.6
HPP92_005603 Vanilla planifolia HOM05D006312 ORTHO05D007843 2.9e-40 169.5 125 62.4
Thhalv10010756m.g Eutrema salsugineum HOM05D006312 ORTHO05D007843 3.8e-40 169.1 167 54.5
SEGI_12518 Sequoiadendron giganteum HOM05D006312 ORTHO05D007843 8.4e-40 167.9 153 57.5
BraA09t39926Z Brassica rapa HOM05D006312 ORTHO05D007843 1.1e-39 167.5 139 61.2
Os05g0490900 Oryza sativa ssp. japonica HOM05D006312 ORTHO05D007843 1.4e-39 167.2 135 65.2
FAN23G3058 Fragaria x ananassa HOM05D006312 ORTHO05D007843 1.9e-39 166.8 140 63.6
FAN19G0451 Fragaria x ananassa HOM05D006312 ORTHO05D007843 2.4e-39 166.4 140 63.6
FAN23G0139 Fragaria x ananassa HOM05D006312 ORTHO05D007843 2.4e-39 166.4 140 63.6
FAN26G2993 Fragaria x ananassa HOM05D006312 ORTHO05D007843 2.4e-39 166.4 140 63.6
FAN28G0218 Fragaria x ananassa HOM05D006312 ORTHO05D007843 2.4e-39 166.4 140 63.6
PSO541G2566 Papaver somniferum HOM05D006312 ORTHO05D007843 3.2e-39 166.0 189 49.2
Sp5g10730 Schrenkiella parvula HOM05D006312 ORTHO05D007843 3.2e-39 166.0 163 57.1
FAN23G0893 Fragaria x ananassa HOM05D006312 ORTHO05D007843 4.2e-39 165.6 108 75.0
Lalb_Chr01g0019941 Lupinus albus HOM05D006312 ORTHO05D007843 7.1e-39 164.9 125 67.2
FvH4_1g09790 Fragaria vesca HOM05D006312 ORTHO05D007843 2.7e-38 162.9 177 54.2
Medtr7g095930 Medicago truncatula HOM05D006312 ORTHO05D007843 4.6e-38 162.2 188 53.2
CDE07G0026 Ceratophyllum demersum HOM05D006312 ORTHO05D007843 1.9e-36 156.8 154 57.1
CiPaw.08G182900 Carya illinoinensis HOM05D006312 ORTHO05D007843 7.3e-36 154.8 103 71.8
unitig_748.g7258 Utricularia gibba HOM05D006312 ORTHO05D007843 1.1e-34 151.0 140 56.4
GSVIVG01026613001 Vitis vinifera HOM05D006312 ORTHO05D007843 1.4e-34 150.6 91 81.3
Lj2A507T48 Lonicera japonica HOM05D006312 ORTHO05D007843 1.7e-32 143.7 161 54.0
vmacro18480 Vaccinium macrocarpon HOM05D006312 ORTHO05D007843 2.2e-32 143.3 115 66.1
MD15G1226900 Malus domestica HOM05D006312 ORTHO05D007843 3.8e-32 142.5 116 62.9
SMO356G0733 Selaginella moellendorffii HOM05D006312 ORTHO05D007843 4.9e-32 142.1 109 60.6
Hma1.2p1_0034F.1_g021590 Hydrangea macrophylla HOM05D006312 ORTHO05D007843 3.5e-30 136.0 120 63.3
AagrBONN_evm.TU.Sc2ySwM_117.3170 Anthoceros agrestis HOM05D006312 ORTHO05D007843 6.0e-30 135.2 128 51.6
CBR_g16852 Chara braunii HOM05D006312 ORTHO05D007843 2.3e-29 133.3 132 53.0
Mapoly0072s0008 Marchantia polymorpha HOM05D006312 ORTHO05D007843 3.9e-29 132.5 185 41.6
Pp3c12_25230 Physcomitrium patens HOM05D006312 ORTHO05D007843 6.7e-29 131.7 172 44.8
Ah.12g058670 Amaranthus hybridus HOM05D006312 ORTHO05D007843 8.7e-29 131.3 94 68.1
Nn6g34643 Nelumbo nucifera HOM05D006312 ORTHO05D007843 3.3e-28 129.4 158 48.7
AUR62037337 Chenopodium quinoa HOM05D006312 ORTHO05D007843 1.1e-26 124.4 108 63.0
Haze_03648 Corylus avellana HOM05D006312 ORTHO05D007843 1.1e-26 124.4 169 45.0
Cre16.g679300 Chlamydomonas reinhardtii HOM05D006312 ORTHO05D007843 4.5e-17 92.4 120 42.5
MCO03G312 Micromonas commoda HOM05D006312 ORTHO05D007843 1.3e-16 90.9 98 46.9
CSS0018042 Camellia sinensis var. sinensis HOM05D006312 ORTHO05D007843 5.1e-13 79.0 48 77.1
Aa31LG10G3290 Aethionema arabicum HOM05D001371 ORTHO05D001319 5.7e-12 75.5 123 44.7
CSS0013138 Camellia sinensis var. sinensis HOM05D006312 ORTHO05D007843 2.1e-11 73.6 61 60.7
PRCOL_00002065 Prasinoderma coloniale HOM05D006312 ORTHO05D007843 9.3e-07 58.2 81 43.2
Manes.01G158400 Manihot esculenta HOM05D006312 ORTHO05D007843 1.6e-06 57.4 64 51.6


User provided reference genes

Program Settings