Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g067935.1 Solanum lycopersicum HOM05D004407 ORTHO05D005074 5.6e-39 163.7 76 100.0
Sopen02g017070 Solanum pennellii HOM05D000413 ORTHO05D005074 3.4e-36 154.5 74 94.6
PGSC0003DMG400006921 Solanum tuberosum HOM05D004407 ORTHO05D005074 7.8e-33 143.3 74 87.8
Nn4g22470 Nelumbo nucifera HOM05D004407 ORTHO05D005074 9.9e-20 99.8 74 62.2
Nitab4.5_0001031g0160 Nicotiana tabacum HOM05D004407 ORTHO05D005074 9.9e-20 99.8 74 62.2
Ciclev10017684m.g Citrus clementina HOM05D004407 ORTHO05D005074 1.4e-18 95.9 72 59.7
Nitab4.5_0001863g0220 Nicotiana tabacum HOM05D004407 ORTHO05D005074 1.4e-18 95.9 74 60.8
CAN.G473.50 Capsicum annuum HOM05D004407 ORTHO05D005074 2.4e-18 95.1 74 59.5
PGSC0003DMG400012626 Solanum tuberosum HOM05D004407 ORTHO05D005074 2.4e-18 95.1 74 59.5
Nn3g16588 Nelumbo nucifera HOM05D004407 ORTHO05D005074 5.4e-18 94.0 76 59.2
Solyc02g093710.1 Solanum lycopersicum HOM05D004407 ORTHO05D005074 1.6e-17 92.4 74 58.1
Sopen02g038350 Solanum pennellii HOM05D004407 ORTHO05D005074 1.6e-17 92.4 74 58.1
Manes.15G155400 Manihot esculenta HOM05D004407 ORTHO05D005074 3.5e-17 91.3 71 57.7
Hma1.2p1_0818F.1_g223560 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 6.0e-17 90.5 72 56.9
GSVIVG01003970001 Vitis vinifera HOM05D004407 ORTHO05D005074 6.0e-17 90.5 78 55.1
CiPaw.03G049400 Carya illinoinensis HOM05D004407 ORTHO05D005074 7.8e-17 90.1 74 58.1
Hma1.2p1_0818F.1_g223530 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 7.8e-17 90.1 72 56.9
Hma1.2p1_1484F.1_g286386 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 7.8e-17 90.1 72 56.9
Hma1.2p1_1484F.1_g286410 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 7.8e-17 90.1 72 56.9
TWI36G1179 Tripterygium wilfordii HOM05D004407 ORTHO05D005074 7.8e-17 90.1 72 61.1
DCAR_015074 Daucus carota HOM05D004407 ORTHO05D005074 1.0e-16 89.7 76 53.9
Prupe.3G298600 Prunus persica HOM05D004407 ORTHO05D005074 1.0e-16 89.7 76 53.9
ClCG09G019590 Citrullus lanatus HOM05D004407 ORTHO05D005074 1.3e-16 89.4 76 55.3
Migut.K01432 Erythranthe guttata HOM05D004407 ORTHO05D005074 1.3e-16 89.4 74 58.1
Eucgr.J02274 Eucalyptus grandis HOM05D004407 ORTHO05D005074 1.3e-16 89.4 76 55.3
Gohir.A09G032000 Gossypium hirsutum HOM05D004407 ORTHO05D005074 1.3e-16 89.4 72 58.3
Oeu054661.1 Olea europaea HOM05D004407 ORTHO05D005074 1.3e-16 89.4 72 59.7
DCAR_015072 Daucus carota HOM05D004407 ORTHO05D005074 3.0e-16 88.2 72 56.9
MD09G1018600 Malus domestica HOM05D004407 ORTHO05D005074 3.0e-16 88.2 76 55.3
MD17G1019100 Malus domestica HOM05D004407 ORTHO05D005074 3.9e-16 87.8 76 56.6
Hma1.2p1_0818F.1_g223510 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 5.1e-16 87.4 72 56.9
Hma1.2p1_0818F.1_g223550 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 5.1e-16 87.4 72 56.9
Hma1.2p1_1484F.1_g286420 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 5.1e-16 87.4 72 56.9
Sed0009704 Sechium edule HOM05D004407 ORTHO05D005074 5.1e-16 87.4 76 53.9
VMungo1383G1696 Vigna mungo HOM05D004407 ORTHO05D005074 5.1e-16 87.4 78 52.6
MELO3C021614.2 Cucumis melo HOM05D004407 ORTHO05D005074 6.6e-16 87.0 76 53.9
CsaV3_5G026800 Cucumis sativus L. HOM05D004407 ORTHO05D005074 6.6e-16 87.0 76 53.9
Duzib264G0535 Durio zibethinus HOM05D004407 ORTHO05D005074 6.6e-16 87.0 74 56.8
Gorai.012G091100 Gossypium raimondii HOM05D004407 ORTHO05D005074 6.6e-16 87.0 72 56.9
CSS0009144 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 8.6e-16 86.7 74 55.4
Gohir.A05G342300 Gossypium hirsutum HOM05D004407 ORTHO05D005074 1.1e-15 86.3 72 56.9
Duzib187G1586 Durio zibethinus HOM05D004407 ORTHO05D005074 1.5e-15 85.9 72 55.6
PGR083G0262 Punica granatum HOM05D004407 ORTHO05D005074 1.5e-15 85.9 71 56.3
SGA_v2.0_scaffold47G17536 Striga asiatica HOM05D004407 ORTHO05D005074 1.9e-15 85.5 76 53.9
TAR622G1038 Trochodendron aralioides HOM05D004407 ORTHO05D005074 1.9e-15 85.5 74 56.8
Sed0005342 Sechium edule HOM05D004407 ORTHO05D005074 2.5e-15 85.1 76 52.6
Thecc.04G026300 Theobroma cacao HOM05D004407 ORTHO05D005074 3.3e-15 84.7 72 54.2
Gohir.D04G080420 Gossypium hirsutum HOM05D004407 ORTHO05D005074 4.3e-15 84.3 72 55.6
Hma1.2p1_1484F.1_g286390 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 4.3e-15 84.3 72 55.6
PSO017G7028 Papaver somniferum HOM05D004407 ORTHO05D005074 4.3e-15 84.3 74 55.4
PSO832G4071 Papaver somniferum HOM05D004407 ORTHO05D005074 4.3e-15 84.3 74 55.4
Psat0s1368g0080 Pisum sativum HOM05D004407 ORTHO05D005074 4.3e-15 84.3 75 52.0
Gorai.006G037000 Gossypium raimondii HOM05D004407 ORTHO05D005074 7.3e-15 83.6 71 56.3
MBI11_g29154_MAGBIO Magnolia biondii HOM05D004407 ORTHO05D005074 7.3e-15 83.6 72 54.2
THA.LOC104805351 Tarenaya hassleriana HOM05D004407 ORTHO05D005074 7.3e-15 83.6 76 55.3
Aa31LG9G940 Aethionema arabicum HOM05D004407 ORTHO05D005074 9.5e-15 83.2 78 51.3
Aqoxy4G01774 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 9.5e-15 83.2 70 57.1
Aqoxy5G03597 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 9.5e-15 83.2 70 57.1
EL10Ac4g07679 Beta vulgaris HOM05D004407 ORTHO05D005074 9.5e-15 83.2 72 56.9
Rhsim10G0012400 Rhododendron simsii HOM05D004407 ORTHO05D005074 9.5e-15 83.2 76 52.6
PSO063G0264 Papaver somniferum HOM05D004407 ORTHO05D005074 1.2e-14 82.8 74 54.1
Phvul.008G156900 Phaseolus vulgaris HOM05D004407 ORTHO05D005074 1.2e-14 82.8 78 51.3
Sabra16G0218800 Salix brachista HOM05D000111 ORTHO05D000134 1.2e-14 82.8 72 54.2
Ah.06g182110 Amaranthus hybridus HOM05D004407 ORTHO05D005074 1.6e-14 82.4 76 51.3
Aqoxy3G01382 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 1.6e-14 82.4 71 54.9
CANSAT64G1834 Cannabis sativa HOM05D004407 ORTHO05D005074 1.6e-14 82.4 76 52.6
Glyma.02G190900 Glycine max HOM05D004407 ORTHO05D005074 1.6e-14 82.4 72 52.8
TPR.G1105 Trifolium pratense HOM05D004407 ORTHO05D005074 1.6e-14 82.4 75 52.0
TPR.G1219 Trifolium pratense HOM05D004407 ORTHO05D005074 1.6e-14 82.4 75 52.0
Haze_14799 Corylus avellana HOM05D002760 ORTHO05D003169 3.6e-14 81.3 72 55.6
Dinv25704 Davidia involucrata HOM05D004407 ORTHO05D005074 3.6e-14 81.3 70 55.7
Potri.001G338100 Populus trichocarpa HOM05D004407 ORTHO05D005074 3.6e-14 81.3 74 48.6
Sed0027888 Sechium edule HOM05D004407 ORTHO05D005074 3.6e-14 81.3 74 52.7
MSTRG.24058 Avicennia marina HOM05D004407 ORTHO05D005074 4.7e-14 80.9 74 51.4
Ca_03872_v3 Cicer arietinum L. HOM05D004407 ORTHO05D005074 4.7e-14 80.9 75 50.7
Medtr1g051195 Medicago truncatula HOM05D004407 ORTHO05D005074 4.7e-14 80.9 75 50.7
THA.LOC104825308 Tarenaya hassleriana HOM05D004407 ORTHO05D005074 4.7e-14 80.9 76 52.6
Actinidia05950 Actinidia chinensis HOM05D004407 ORTHO05D005074 6.2e-14 80.5 74 54.1
CANSAT64G2558 Cannabis sativa HOM05D004407 ORTHO05D005074 6.2e-14 80.5 71 54.9
QL02p073303 Quercus lobata HOM05D004407 ORTHO05D005074 6.2e-14 80.5 72 58.3
QL02p073308 Quercus lobata HOM05D004407 ORTHO05D005074 6.2e-14 80.5 72 58.3
Aa31LG2G5400 Aethionema arabicum HOM05D004407 ORTHO05D005074 8.1e-14 80.1 71 54.9
BcaB07g31285 Brassica carinata HOM05D004407 ORTHO05D005074 8.1e-14 80.1 72 54.2
A04p13730 Brassica napus HOM05D004407 ORTHO05D005074 8.1e-14 80.1 71 53.5
FvH4_6g52330 Fragaria vesca HOM05D004407 ORTHO05D005074 8.1e-14 80.1 74 52.7
FAN05G1079 Fragaria x ananassa HOM05D004407 ORTHO05D005074 8.1e-14 80.1 74 52.7
Hma1.2p1_0279F.1_g112130 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 8.1e-14 80.1 71 56.3
Thecc.04G026400 Theobroma cacao HOM05D004407 ORTHO05D005074 8.1e-14 80.1 74 52.7
PSO407G0367 Papaver somniferum HOM05D004407 ORTHO05D005074 1.1e-13 79.7 74 52.7
Carub.0007s3479 Capsella rubella HOM05D004407 ORTHO05D005074 1.8e-13 79.0 71 53.5
Cpa.g.sc130.51 Carica papaya HOM05D004407 ORTHO05D005074 1.8e-13 79.0 77 51.9
COL.COLO4_29257 Corchorus olitorius HOM05D004407 ORTHO05D005074 1.8e-13 79.0 72 51.4
Potri.001G336200 Populus trichocarpa HOM05D004407 ORTHO05D005074 2.4e-13 78.6 72 52.8
C04p47510 Brassica napus HOM05D004407 ORTHO05D005074 4.0e-13 77.8 71 52.1
BolC4t26352H Brassica oleracea HOM05D004407 ORTHO05D005074 4.0e-13 77.8 71 52.1
BraA04t17032Z Brassica rapa HOM05D004407 ORTHO05D005074 4.0e-13 77.8 71 52.1
CARHR213820 Cardamine hirsuta HOM05D004407 ORTHO05D005074 4.0e-13 77.8 71 52.1
TAR625G1142 Trochodendron aralioides HOM05D004407 ORTHO05D005074 4.0e-13 77.8 72 56.9
BcaC04g22350 Brassica carinata HOM05D004407 ORTHO05D005074 5.2e-13 77.4 72 54.2
A09p16650 Brassica napus HOM05D006758 ORTHO05D008326 5.2e-13 77.4 72 54.2
C09p20260 Brassica napus HOM05D006758 ORTHO05D008326 5.2e-13 77.4 72 54.2
BolC9t54931H Brassica oleracea HOM05D006758 ORTHO05D008326 5.2e-13 77.4 72 54.2
BraA09t37304Z Brassica rapa HOM05D006758 ORTHO05D008326 5.2e-13 77.4 72 54.2
Sabra16G0217100 Salix brachista HOM05D004407 ORTHO05D005074 5.2e-13 77.4 72 50.0
Sp7g01180 Schrenkiella parvula HOM05D004407 ORTHO05D005074 5.2e-13 77.4 71 54.9
Prupe.3G298500 Prunus persica HOM05D004407 ORTHO05D005074 6.8e-13 77.0 76 50.0
FAN14G0353 Fragaria x ananassa HOM05D004407 ORTHO05D005074 1.2e-12 76.3 74 51.4
Thhalv10028148m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 1.5e-12 75.9 71 50.7
Lsat_1_v5_gn_2_93521 Lactuca sativa HOM05D004407 ORTHO05D005074 2.0e-12 75.5 69 53.6
Sc03g0006940 Simmondsia chinensis HOM05D004407 ORTHO05D005074 3.4e-12 74.7 73 49.3
Sc03g0006970 Simmondsia chinensis HOM05D004407 ORTHO05D005074 3.4e-12 74.7 73 49.3
CARHR025870 Cardamine hirsuta HOM05D004407 ORTHO05D005074 5.8e-12 73.9 72 55.6
Cc07_g00320 Coffea canephora HOM05D004407 ORTHO05D005074 2.2e-11 72.0 73 49.3
A05p02450 Brassica napus HOM05D004407 ORTHO05D005074 3.8e-11 71.2 72 48.6
A05p02470 Brassica napus HOM05D004407 ORTHO05D005074 3.8e-11 71.2 72 47.2
BraA05t19239Z Brassica rapa HOM05D004407 ORTHO05D005074 3.8e-11 71.2 72 48.6
Gohir.A11G065600 Gossypium hirsutum HOM05D004407 ORTHO05D005074 4.9e-11 70.9 74 47.3
Gohir.D11G069800 Gossypium hirsutum HOM05D004407 ORTHO05D005074 4.9e-11 70.9 78 44.9
Gorai.007G074900 Gossypium raimondii HOM05D004407 ORTHO05D005074 4.9e-11 70.9 78 44.9
A05p02490 Brassica napus HOM05D004407 ORTHO05D005074 6.4e-11 70.5 72 48.6
C04p02920 Brassica napus HOM05D004407 ORTHO05D005074 6.4e-11 70.5 72 48.6
BolC4t21933H Brassica oleracea HOM05D004407 ORTHO05D005074 6.4e-11 70.5 72 48.6
BraA05t19242Z Brassica rapa HOM05D004407 ORTHO05D005074 6.4e-11 70.5 72 48.6
C04p02950 Brassica napus HOM05D004407 ORTHO05D005074 8.4e-11 70.1 72 50.0
BolC4t21935H Brassica oleracea HOM05D004407 ORTHO05D005074 8.4e-11 70.1 72 50.0
BcaNung02830 Brassica carinata HOM05D004407 ORTHO05D005074 1.4e-10 69.3 72 50.0
BcaNung02832 Brassica carinata HOM05D004407 ORTHO05D005074 2.4e-10 68.6 72 48.6
Migut.H00046 Erythranthe guttata HOM05D004407 ORTHO05D005074 2.4e-10 68.6 67 50.7
TAR374G1728 Trochodendron aralioides HOM05D004407 ORTHO05D005074 4.1e-10 67.8 64 54.7
C04p02940 Brassica napus HOM05D004407 ORTHO05D005074 5.4e-10 67.4 72 45.8
BolC4t21934H Brassica oleracea HOM05D004407 ORTHO05D005074 5.4e-10 67.4 72 45.8
Duzib187G1582 Durio zibethinus HOM05D004407 ORTHO05D005074 5.4e-10 67.4 74 44.6
A05p02480 Brassica napus HOM05D004407 ORTHO05D005074 1.2e-09 66.2 72 45.8
BraA05t19241Z Brassica rapa HOM05D004407 ORTHO05D005074 1.2e-09 66.2 72 45.8
BraA05t19240Z Brassica rapa HOM05D004407 ORTHO05D005074 1.6e-09 65.9 72 44.4
HanXRQChr09g0255761 Helianthus annuus HOM05D004407 ORTHO05D005074 1.6e-09 65.9 68 50.0
Thhalv10019315m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 2.1e-09 65.5 72 44.4
SGA_v2.0_scaffold154G37145 Striga asiatica HOM05D002760 ORTHO05D003169 2.7e-09 65.1 45 62.2
ECA238G3518 Erigeron canadensis HOM05D004407 ORTHO05D005074 4.6e-09 64.3 75 44.0
HanXRQChr14g0451031 Helianthus annuus HOM05D004407 ORTHO05D005074 4.6e-09 64.3 74 47.3
ECA238G3732 Erigeron canadensis HOM05D004407 ORTHO05D005074 6.0e-09 63.9 75 44.0
Rhsim10G0012300 Rhododendron simsii HOM05D004407 ORTHO05D005074 6.0e-09 63.9 56 51.8
RcHm_v2.0_Chr2g0173921 Rosa chinensis HOM05D004407 ORTHO05D005074 1.0e-08 63.2 48 56.2
PGR083G0848 Punica granatum HOM05D004407 ORTHO05D005074 1.7e-08 62.4 72 44.4
PGR083G1149 Punica granatum HOM05D004407 ORTHO05D005074 1.7e-08 62.4 71 43.7
BcaB02g07933 Brassica carinata HOM05D004407 ORTHO05D005074 3.0e-08 61.6 75 44.0
BcaNung02831 Brassica carinata HOM05D004407 ORTHO05D005074 3.0e-08 61.6 52 53.8
Thhalv10028030m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 3.9e-08 61.2 71 43.7
AT5G24640 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 8.7e-08 60.1 68 45.6
HPP92_009915 Vanilla planifolia HOM05D004407 ORTHO05D005074 2.5e-07 58.5 76 39.5
AL4G40040 Arabidopsis lyrata HOM05D004407 ORTHO05D005074 3.3e-07 58.2 68 45.6
AT5G40690 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 5.6e-07 57.4 78 38.5
AL7G49050 Arabidopsis lyrata HOM05D004407 ORTHO05D005074 9.6e-07 56.6 71 42.3
HPP92_009916 Vanilla planifolia HOM05D004407 ORTHO05D005074 1.6e-06 55.8 73 34.2
Sp4g23980 Schrenkiella parvula HOM05D004407 ORTHO05D005074 2.1e-06 55.5 72 43.1
AT2G41730 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 4.7e-06 54.3 69 44.9


User provided reference genes

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