Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g067910.1 Solanum lycopersicum HOM05D007617 ORTHO05D007195 4.2e-60 234.6 126 100.0
Sopen02g017030 Solanum pennellii HOM05D007617 ORTHO05D007195 2.3e-58 228.8 126 96.8
PGSC0003DMG400006919 Solanum tuberosum HOM05D007617 ORTHO05D007195 3.9e-53 211.5 125 89.6
CAN.G1057.14 Capsicum annuum HOM05D007617 ORTHO05D007195 9.5e-44 180.3 130 76.9
Nitab4.5_0004496g0030 Nicotiana tabacum HOM05D007617 ORTHO05D007195 6.0e-38 161.0 133 71.4
Nitab4.5_0000040g0620 Nicotiana tabacum HOM05D007617 ORTHO05D007195 4.0e-34 148.3 133 69.9
PGSC0003DMG400012616 Solanum tuberosum HOM05D007617 ORTHO05D007195 2.4e-26 122.5 140 61.4
Sopen02g038090 Solanum pennellii HOM05D007617 ORTHO05D007195 5.4e-23 111.3 140 57.1
Peaxi162Scf00080g00151 Petunia axillaris HOM05D007617 ORTHO05D007195 3.9e-21 105.1 124 54.0
Nitab4.5_0014774g0010 Nicotiana tabacum HOM05D007617 ORTHO05D007195 6.6e-21 104.4 134 56.0
DCAR_011273 Daucus carota HOM05D007617 ORTHO05D007195 1.2e-17 93.6 132 51.5
Lsat_1_v5_gn_2_94241 Lactuca sativa HOM05D007617 ORTHO05D007195 1.7e-16 89.7 135 50.4
Aqoxy5G03650 Aquilegia oxysepala HOM05D007617 ORTHO05D007195 1.9e-15 86.3 77 70.1
Hma1.2p1_0818F.1_g223400 Hydrangea macrophylla HOM05D007617 ORTHO05D007195 2.4e-15 85.9 136 49.3
Lsat_1_v5_gn_2_91001 Lactuca sativa HOM05D007617 ORTHO05D007195 5.4e-15 84.7 135 48.9
vmacro18302 Vaccinium macrocarpon HOM05D007617 ORTHO05D007195 6.0e-14 81.3 130 45.4
Cc07_g00130 Coffea canephora HOM05D007617 ORTHO05D007195 5.1e-13 78.2 142 46.5
Prupe.3G296000 Prunus persica HOM05D007617 ORTHO05D007195 1.1e-12 77.0 64 68.8
Oeu023836.1 Olea europaea HOM05D007617 ORTHO05D007195 1.5e-12 76.6 158 44.9
Ciclev10022896m.g Citrus clementina HOM05D007617 ORTHO05D007195 3.3e-12 75.5 133 44.4
QL02p073546 Quercus lobata HOM05D007617 ORTHO05D007195 3.3e-12 75.5 131 45.0
Ciclev10017789m.g Citrus clementina HOM05D007617 ORTHO05D007195 4.3e-12 75.1 67 68.7
Sed0018064 Sechium edule HOM05D007617 ORTHO05D007195 4.3e-12 75.1 138 46.4
Dinv33408 Davidia involucrata HOM05D007617 ORTHO05D007195 5.6e-12 74.7 110 49.1
Oeu054643.1 Olea europaea HOM05D007617 ORTHO05D007195 5.6e-12 74.7 133 44.4
Potri.012G090700 Populus trichocarpa HOM05D007617 ORTHO05D007195 5.6e-12 74.7 127 44.9
SGA_v2.0_scaffold47G17524 Striga asiatica HOM05D007617 ORTHO05D007195 1.3e-11 73.6 131 47.3
TPR.G31739 Trifolium pratense HOM05D007617 ORTHO05D007195 1.6e-11 73.2 104 43.3
FvH4_5g06710 Fragaria vesca HOM05D007617 ORTHO05D007195 2.1e-11 72.8 128 44.5
Lsat_1_v5_gn_3_30061 Lactuca sativa HOM05D007617 ORTHO05D007195 2.8e-11 72.4 121 47.9
FAN08G2040 Fragaria x ananassa HOM05D007617 ORTHO05D007195 3.6e-11 72.0 130 44.6
FAN13G2538 Fragaria x ananassa HOM05D007617 ORTHO05D007195 8.1e-11 70.9 129 45.0
MD06G1161600 Malus domestica HOM05D007617 ORTHO05D007195 8.1e-11 70.9 136 44.9
Medtr1g093790 Medicago truncatula HOM05D007617 ORTHO05D007195 8.1e-11 70.9 104 43.3
FAN18G3066 Fragaria x ananassa HOM05D007617 ORTHO05D007195 1.1e-10 70.5 128 44.5
ATR1145G009 Amborella trichopoda HOM05D007617 ORTHO05D007195 5.3e-10 68.2 127 43.3
Psat6g179560 Pisum sativum HOM05D007617 ORTHO05D007195 5.3e-10 68.2 104 42.3
Glyma.05G114700 Glycine max HOM05D007617 ORTHO05D007195 6.9e-10 67.8 72 55.6
Manes.14G057300 Manihot esculenta HOM05D007617 ORTHO05D007195 6.9e-10 67.8 130 45.4
Oeu050454.1 Olea europaea HOM05D007617 ORTHO05D007195 6.9e-10 67.8 133 41.4
RcHm_v2.0_Chr7g0191931 Rosa chinensis HOM05D007617 ORTHO05D007195 1.5e-09 66.6 129 43.4
Atru.chr6.2453 Acer truncatum HOM05D007617 ORTHO05D007195 2.0e-09 66.2 65 64.6
Atru.chr9.1807 Acer truncatum HOM05D007617 ORTHO05D007195 2.0e-09 66.2 109 48.6
Phvul.004G059700 Phaseolus vulgaris HOM05D007617 ORTHO05D007195 2.6e-09 65.9 132 43.2
PGR142G0897 Punica granatum HOM05D007617 ORTHO05D007195 2.6e-09 65.9 131 43.5
MSTRG.15542 Avicennia marina HOM05D007617 ORTHO05D007195 3.4e-09 65.5 132 43.2
Lalb_Chr21g0317701 Lupinus albus HOM05D007617 ORTHO05D007195 3.4e-09 65.5 131 44.3
Thecc.03G118700 Theobroma cacao HOM05D011792 ORTHO05D007195 3.4e-09 65.5 90 53.3
TAR374G0075 Trochodendron aralioides HOM05D007617 ORTHO05D007195 3.4e-09 65.5 67 61.2
Sc04g0009720 Simmondsia chinensis HOM05D007617 ORTHO05D007195 4.5e-09 65.1 68 63.2
SGA_v2.0_scaffold30G12404 Striga asiatica HOM05D007617 ORTHO05D007195 5.8e-09 64.7 141 42.6
Migut.K01418 Erythranthe guttata HOM05D007617 ORTHO05D007195 7.6e-09 64.3 68 61.8
CANSAT64G0294 Cannabis sativa HOM05D007617 ORTHO05D007195 9.9e-09 63.9 141 39.7
Hund06047 Selenicereus undatus HOM05D007617 ORTHO05D007195 1.3e-08 63.5 129 41.9
Lalb_Chr02g0158101 Lupinus albus HOM05D007617 ORTHO05D007195 1.7e-08 63.2 127 41.7
VMungo0464G0279 Vigna mungo HOM05D007617 ORTHO05D007195 1.7e-08 63.2 132 40.9
EL10As2g23175 Beta vulgaris HOM05D007617 ORTHO05D007195 3.8e-08 62.0 124 45.2
FAN04G0785 Fragaria x ananassa HOM05D007617 ORTHO05D007195 6.4e-08 61.2 129 42.6
Rhsim08G0047600 Rhododendron simsii HOM05D007617 ORTHO05D007195 8.4e-08 60.8 130 41.5
Migut.K00629 Erythranthe guttata HOM05D007617 ORTHO05D007195 1.1e-07 60.5 66 59.1
QL10p005918 Quercus lobata HOM05D007617 ORTHO05D007195 1.1e-07 60.5 141 37.6
Aa31LG1G18820 Aethionema arabicum HOM05D010525 ORTHO05D007195 1.4e-07 60.1 138 38.4
ClCG05G013140 Citrullus lanatus HOM05D007617 ORTHO05D007195 1.4e-07 60.1 119 40.3
Glyma.19G053100 Glycine max HOM05D007617 ORTHO05D007195 1.4e-07 60.1 127 40.9
Manes.06G112400 Manihot esculenta HOM05D007617 ORTHO05D007195 1.4e-07 60.1 138 38.4
CiPaw.03G047400 Carya illinoinensis HOM05D007617 ORTHO05D007195 1.9e-07 59.7 64 56.2
CiPaw.09G026700 Carya illinoinensis HOM05D007617 ORTHO05D007195 1.9e-07 59.7 64 56.2
Haze_07632 Corylus avellana HOM05D007617 ORTHO05D007195 1.9e-07 59.7 144 36.8
Lj2g0010313 Lotus japonicus HOM05D007617 ORTHO05D007195 1.9e-07 59.7 134 38.8
AL5G27740 Arabidopsis lyrata HOM05D010525 ORTHO05D007195 3.2e-07 58.9 70 57.1
MSTRG.549 Avicennia marina HOM05D007617 ORTHO05D007195 5.5e-07 58.2 63 58.7
MD02G1049300 Malus domestica HOM05D007617 ORTHO05D007195 5.5e-07 58.2 139 42.4
Carub.0008s2391 Capsella rubella HOM05D010525 ORTHO05D007195 9.3e-07 57.4 139 38.8
Thhalv10010898m.g Eutrema salsugineum HOM05D010525 ORTHO05D007195 1.6e-06 56.6 136 39.7
AL8G40240 Arabidopsis lyrata HOM05D010525 ORTHO05D007195 2.1e-06 56.2 140 39.3
Ca_11155_v3 Cicer arietinum L. HOM05D007617 ORTHO05D007195 2.1e-06 56.2 103 40.8
Ca_11158_v3 Cicer arietinum L. HOM05D007617 ORTHO05D007195 2.1e-06 56.2 103 40.8
TAR371G0337 Trochodendron aralioides HOM05D007617 ORTHO05D007195 2.1e-06 56.2 141 36.9
CARHR276990 Cardamine hirsuta HOM05D010525 ORTHO05D007195 2.7e-06 55.8 135 40.0
TWI23G0333 Tripterygium wilfordii HOM05D007617 ORTHO05D007195 2.7e-06 55.8 130 37.7
TWI39G0914 Tripterygium wilfordii HOM05D007617 ORTHO05D007195 2.7e-06 55.8 131 37.4
CsaV3_3G027400 Cucumis sativus L. HOM05D007617 ORTHO05D007195 4.6e-06 55.1 65 56.9
Duzib205G1108 Durio zibethinus HOM05D011792 ORTHO05D007195 4.6e-06 55.1 104 46.2
Potri.001G340100 Populus trichocarpa HOM05D007617 ORTHO05D007195 7.9e-06 54.3 61 60.7
Sed0015223 Sechium edule HOM05D007617 ORTHO05D007195 7.9e-06 54.3 65 58.5


User provided reference genes

Program Settings