Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g067900.3 Solanum lycopersicum HOM05D006554 ORTHO05D008778 8.5e-185 650.2 329 100.0
Sopen02g017020 Solanum pennellii HOM05D006554 ORTHO05D008778 2.2e-180 635.6 334 97.3
PGSC0003DMG400006964 Solanum tuberosum HOM05D006554 ORTHO05D008778 4.4e-173 611.3 334 93.1
Nitab4.5_0004496g0080 Nicotiana tabacum HOM05D006554 ORTHO05D008778 4.1e-147 525.0 335 80.6
Nitab4.5_0000040g0640 Nicotiana tabacum HOM05D006554 ORTHO05D008778 6.1e-143 511.1 337 79.5
Peaxi162Scf00080g01410 Petunia axillaris HOM05D006554 ORTHO05D008778 7.0e-131 471.1 334 72.8
Dinv33413 Davidia involucrata HOM05D006554 ORTHO05D008778 4.3e-80 302.4 352 49.1
MSTRG.3126 Avicennia marina HOM05D006554 ORTHO05D008778 2.5e-67 260.0 319 46.4
Migut.H00036 Erythranthe guttata HOM05D006554 ORTHO05D008778 4.2e-67 259.2 343 43.7
vmacro05891 Vaccinium macrocarpon HOM05D006554 ORTHO05D008778 7.4e-64 248.4 332 45.2
GSVIVG01032362001 Vitis vinifera HOM05D006554 ORTHO05D008778 1.7e-63 247.3 358 42.7
Oeu050455.2 Olea europaea HOM05D006554 ORTHO05D008778 2.2e-63 246.9 352 43.2
Cfa007322 Carpinus fangiana HOM05D006554 ORTHO05D008778 1.4e-62 244.2 324 43.5
Haze_14775 Corylus avellana HOM05D006554 ORTHO05D008778 1.2e-61 241.1 324 42.3
Actinidia05967 Actinidia chinensis HOM05D006554 ORTHO05D008778 5.0e-60 235.7 314 46.5
TPR.G1120 Trifolium pratense HOM05D006554 ORTHO05D008778 1.9e-59 233.8 326 44.5
Medtr7g032890 Medicago truncatula HOM05D006554 ORTHO05D008778 2.5e-59 233.4 319 45.8
Cc07_g00120 Coffea canephora HOM05D006554 ORTHO05D008778 1.2e-58 231.1 329 38.9
TAR629G0722 Trochodendron aralioides HOM05D006554 ORTHO05D008778 1.8e-57 227.3 379 39.8
RhsimUnG0087800 Rhododendron simsii HOM05D006554 ORTHO05D008778 2.3e-57 226.9 321 42.7
Glyma.19G079100 Glycine max HOM05D006554 ORTHO05D008778 2.6e-56 223.4 331 41.7
QL02p073734 Quercus lobata HOM05D006554 ORTHO05D008778 2.6e-56 223.4 320 43.1
Phvul.008G147100 Phaseolus vulgaris HOM05D006554 ORTHO05D008778 1.3e-55 221.1 326 42.3
Glyma.16G067800 Glycine max HOM05D006554 ORTHO05D008778 8.2e-55 218.4 325 41.5
Prupe.3G295900 Prunus persica HOM05D006554 ORTHO05D008778 5.9e-53 212.2 324 39.8
Hma1.2p1_0279F.1_g111960 Hydrangea macrophylla HOM05D006554 ORTHO05D008778 6.5e-52 208.8 247 48.6
SalBow1G4569 Salvia bowleyana HOM05D006554 ORTHO05D008778 1.1e-51 208.0 319 40.4
Lsat_1_v5_gn_0_6020 Lactuca sativa HOM05D006554 ORTHO05D008778 7.2e-51 205.3 343 42.0
Manes.15G153200 Manihot esculenta HOM05D006554 ORTHO05D008778 7.2e-51 205.3 338 38.5
Lalb_Chr22g0360641 Lupinus albus HOM05D006554 ORTHO05D008778 6.1e-50 202.2 317 39.7
CiPaw.04G030700 Carya illinoinensis HOM05D006554 ORTHO05D008778 8.0e-50 201.8 319 39.2
MD09G1020300 Malus domestica HOM05D006554 ORTHO05D008778 5.2e-49 199.1 324 39.5
Potri.003G101100 Populus trichocarpa HOM05D006554 ORTHO05D008778 9.7e-48 194.9 313 39.9
SGA_v2.0_scaffold135G34926 Striga asiatica HOM05D006554 ORTHO05D008778 9.7e-48 194.9 327 39.4
Ciclev10015858m.g Citrus clementina HOM05D006554 ORTHO05D008778 1.3e-47 194.5 341 39.3
Nn4g22538 Nelumbo nucifera HOM05D006554 ORTHO05D008778 3.7e-47 193.0 328 39.0
RcHm_v2.0_Chr2g0173581 Rosa chinensis HOM05D006554 ORTHO05D008778 8.2e-47 191.8 323 38.4
Lj1g0005465 Lotus japonicus HOM05D006554 ORTHO05D008778 1.1e-46 191.4 313 39.3
RhsimUnG0005800 Rhododendron simsii HOM05D006554 ORTHO05D008778 7.0e-46 188.7 323 38.7
arahy.Tifrunner.gnm1.ann1.1L0SFZ Arachis hypogaea HOM05D006554 ORTHO05D008778 9.1e-46 188.3 358 37.4
Duzib147G0564 Durio zibethinus HOM05D006554 ORTHO05D008778 2.7e-45 186.8 326 39.3
FAN05G3817 Fragaria x ananassa HOM05D006554 ORTHO05D008778 2.5e-43 180.3 324 36.1
Gohir.A05G353700 Gossypium hirsutum HOM05D006554 ORTHO05D008778 3.2e-43 179.9 325 38.8
Gohir.D04G059400 Gossypium hirsutum HOM05D006554 ORTHO05D008778 3.2e-43 179.9 330 39.7
Gorai.012G066100 Gossypium raimondii HOM05D006554 ORTHO05D008778 3.2e-43 179.9 330 39.7
Prupe.3G207500 Prunus persica HOM05D006554 ORTHO05D008778 7.2e-43 178.7 325 37.2
ECA246G2886 Erigeron canadensis HOM05D006554 ORTHO05D008778 3.6e-42 176.4 316 37.7
EL10Ac5g11640 Beta vulgaris HOM05D006554 ORTHO05D008778 4.7e-42 176.0 318 38.7
ClCG05G012880 Citrullus lanatus HOM05D006554 ORTHO05D008778 1.0e-41 174.9 316 36.4
CANSAT64G1839 Cannabis sativa HOM05D006554 ORTHO05D008778 1.4e-41 174.5 349 34.4
FAN14G0519 Fragaria x ananassa HOM05D006554 ORTHO05D008778 3.0e-41 173.3 316 36.1
FAN14G5462 Fragaria x ananassa HOM05D006554 ORTHO05D008778 6.8e-41 172.2 323 35.9
AUR62028440 Chenopodium quinoa HOM05D006554 ORTHO05D008778 1.5e-40 171.0 317 35.3
Ah.03g136830 Amaranthus hybridus HOM05D003292 ORTHO05D004237 7.5e-40 168.7 319 37.9
Eucgr.J02264 Eucalyptus grandis HOM05D006554 ORTHO05D008778 1.7e-39 167.5 371 31.3
Sabra03G0068900 Salix brachista HOM05D006554 ORTHO05D008778 2.8e-39 166.8 351 34.5
FAN02G3632 Fragaria x ananassa HOM05D006554 ORTHO05D008778 8.3e-39 165.2 314 36.0
Sed0003688 Sechium edule HOM05D006554 ORTHO05D008778 1.8e-38 164.1 316 35.8
CsaV3_3G027590 Cucumis sativus L. HOM05D006554 ORTHO05D008778 3.1e-38 163.3 312 36.5
FvH4_6g52060 Fragaria vesca HOM05D006554 ORTHO05D008778 3.1e-38 163.3 318 34.9
MELO3C014791.2 Cucumis melo HOM05D006554 ORTHO05D008778 5.4e-38 162.5 314 36.0
FAN09G2431 Fragaria x ananassa HOM05D006554 ORTHO05D008778 2.0e-37 160.6 314 35.0
Hund23035 Selenicereus undatus HOM05D006554 ORTHO05D008778 2.1e-34 150.6 300 38.3
Aqoxy5G03668 Aquilegia oxysepala HOM05D006554 ORTHO05D008778 2.8e-34 150.2 356 31.2
PGR083G2647 Punica granatum HOM05D006554 ORTHO05D008778 1.5e-32 144.4 329 33.1
Psat7g108920 Pisum sativum HOM05D006554 ORTHO05D008778 1.3e-31 141.4 246 41.1
unitig_52.g17657 Utricularia gibba HOM05D006554 ORTHO05D008778 2.2e-31 140.6 309 34.3
PSO675G3751 Papaver somniferum HOM05D006554 ORTHO05D008778 1.1e-30 138.3 287 35.2
PSO541G1758 Papaver somniferum HOM05D006554 ORTHO05D008778 1.4e-30 137.9 295 35.9
CSS0050446 Camellia sinensis var. sinensis HOM05D006554 ORTHO05D008778 1.2e-29 134.8 117 55.6
ATR0199G021 Amborella trichopoda HOM05D006554 ORTHO05D008778 1.1e-27 128.3 321 32.1
Thecc.04G022100 Theobroma cacao HOM05D006554 ORTHO05D008778 2.5e-27 127.1 216 39.4
VMungo1383G1633 Vigna mungo HOM05D006554 ORTHO05D008778 6.1e-26 122.5 103 58.3
Lj7A603G61 Lonicera japonica HOM05D006554 ORTHO05D008778 1.3e-23 114.8 157 45.9
Atru.chr6.2449 Acer truncatum HOM05D006554 ORTHO05D008778 3.2e-22 110.2 102 53.9
AT5G40600 Arabidopsis thaliana HOM05D006554 ORTHO05D008778 1.0e-20 105.1 326 28.5
DCAR_002966 Daucus carota HOM05D006554 ORTHO05D008778 5.0e-20 102.8 227 33.0
Ca_06565_v3 Cicer arietinum L. HOM05D006554 ORTHO05D008778 2.5e-19 100.5 158 41.1
C04p47410 Brassica napus HOM05D004424 ORTHO05D005476 9.5e-19 98.6 326 26.4
A04p13620 Brassica napus HOM05D004424 ORTHO05D005476 1.6e-18 97.8 321 25.9
BraA04t17023Z Brassica rapa HOM05D004424 ORTHO05D005476 1.6e-18 97.8 321 25.9
Carub.0007s3489 Capsella rubella HOM05D006554 ORTHO05D008778 3.6e-18 96.7 321 24.9
VMungo1383G3169 Vigna mungo HOM05D006554 ORTHO05D008778 4.7e-18 96.3 170 41.2
BolC4t26342H Brassica oleracea HOM05D006554 ORTHO05D008778 6.2e-18 95.9 326 25.8
Atru.chr6.2450 Acer truncatum HOM05D006554 ORTHO05D008778 8.0e-18 95.5 197 35.5
CARHR148770 Cardamine hirsuta HOM05D006554 ORTHO05D008778 8.0e-18 95.5 322 26.4
AL7G49210 Arabidopsis lyrata HOM05D006554 ORTHO05D008778 1.1e-17 95.1 326 27.3
CDE02G2727 Ceratophyllum demersum HOM05D003393 ORTHO05D003916 2.3e-17 94.0 120 38.3
AL5G16780 Arabidopsis lyrata HOM05D006554 ORTHO05D008778 3.1e-17 93.6 321 27.4
CARHR261360 Cardamine hirsuta HOM05D006554 ORTHO05D008778 3.1e-17 93.6 325 26.2
Sp7g01270 Schrenkiella parvula HOM05D006554 ORTHO05D008778 6.8e-17 92.4 322 23.3
CDE09G0234 Ceratophyllum demersum HOM05D006554 ORTHO05D008778 1.5e-16 91.3 124 38.7
HPP92_003738 Vanilla planifolia HOM05D006554 ORTHO05D008778 1.5e-16 91.3 263 30.8
SEGI_16878 Sequoiadendron giganteum HOM05D000336 ORTHO05D002705 2.0e-16 90.9 382 24.1
Carub.0005s0577 Capsella rubella HOM05D006554 ORTHO05D008778 2.6e-16 90.5 316 28.5
Thhalv10027933m.g Eutrema salsugineum HOM05D006554 ORTHO05D008778 4.4e-16 89.7 156 35.3
BcaB06g27536 Brassica carinata HOM05D006554 ORTHO05D008778 5.8e-16 89.4 142 35.9
BolC4t27196H Brassica oleracea HOM05D006554 ORTHO05D008778 1.7e-15 87.8 129 35.7
SHI53794 Sapria himalayana HOM05D006554 ORTHO05D008778 2.9e-15 87.0 106 45.3
Thhalv10004828m.g Eutrema salsugineum HOM05D006554 ORTHO05D008778 6.4e-15 85.9 250 30.4
COL.COLO4_29198 Corchorus olitorius HOM05D006554 ORTHO05D008778 1.1e-14 85.1 225 32.0
FAN09G3965 Fragaria x ananassa HOM05D000664 ORTHO05D000491 4.1e-14 83.2 159 37.1
CSS0049853 Camellia sinensis var. sinensis HOM05D006554 ORTHO05D008778 9.2e-14 82.0 71 50.7
Sp2g16620 Schrenkiella parvula HOM05D006554 ORTHO05D008778 1.0e-12 78.6 327 27.5
Aa31LG9G1020 Aethionema arabicum HOM05D006554 ORTHO05D008778 1.3e-12 78.2 322 26.4
AT3G27420 Arabidopsis thaliana HOM05D006554 ORTHO05D008778 1.7e-12 77.8 164 32.3
PSO210G7616 Papaver somniferum HOM05D006554 ORTHO05D008778 8.6e-12 75.5 103 45.6
BraA02t08548Z Brassica rapa HOM05D006554 ORTHO05D017433 4.3e-11 73.2 183 35.0
BcaB07g30158 Brassica carinata HOM05D006554 ORTHO05D008778 1.2e-10 71.6 137 38.7
C02p54190 Brassica napus HOM05D006554 ORTHO05D008778 1.2e-10 71.6 178 33.1
BcaC03g17463 Brassica carinata HOM05D006554 ORTHO05D017433 2.1e-10 70.9 178 32.6
A02p35470 Brassica napus HOM05D006554 ORTHO05D017433 2.1e-10 70.9 183 34.4
Cpa.g.sc130.63 Carica papaya HOM05D006554 ORTHO05D008778 2.1e-10 70.9 55 60.0
CDE09G1186 Ceratophyllum demersum HOM05D006554 ORTHO05D008778 4.7e-10 69.7 158 32.3
BolC2t11482H Brassica oleracea HOM05D006554 ORTHO05D008778 6.2e-10 69.3 182 31.9
Cpa.g.sc130.62 Carica papaya HOM05D006554 ORTHO05D008778 6.8e-09 65.9 114 38.6
Mapoly0010s0030 Marchantia polymorpha HOM05D000336 ORTHO05D002705 8.9e-09 65.5 86 38.4
CBR_g49972 Chara braunii HOM05D000336 ORTHO05D002705 2.0e-08 64.3 109 33.0
Eucgr.L02321 Eucalyptus grandis HOM05D006554 ORTHO05D008778 4.4e-08 63.2 63 47.6
Eucgr.C03321 Eucalyptus grandis HOM05D006554 ORTHO05D008778 9.9e-08 62.0 63 47.6
Pp3c22_7000 Physcomitrium patens HOM05D000336 ORTHO05D002705 1.7e-07 61.2 96 35.4
Eucgr.F01485 Eucalyptus grandis HOM05D006554 ORTHO05D008778 3.7e-07 60.1 78 38.5
Pp3c18_15420 Physcomitrium patens HOM05D000336 ORTHO05D002705 4.9e-07 59.7 96 36.5
MSTRG.4151 Avicennia marina HOM05D000336 ORTHO05D002705 6.4e-07 59.3 123 26.8
SalBow3G1252 Salvia bowleyana HOM05D000336 ORTHO05D002705 6.4e-07 59.3 97 32.0
Sc03g0007220 Simmondsia chinensis HOM05D006554 ORTHO05D008778 6.4e-07 59.3 207 29.5
SEGI_39566 Sequoiadendron giganteum HOM05D000336 ORTHO05D002705 8.3e-07 58.9 136 28.7
Gohir.D10G116100 Gossypium hirsutum HOM05D006554 ORTHO05D008778 1.1e-06 58.5 107 39.3
MBI02_g34318_MAGBIO Magnolia biondii HOM05D000336 ORTHO05D002705 1.1e-06 58.5 123 28.5
Nitab4.5_0013605g0010 Nicotiana tabacum HOM05D000336 ORTHO05D002705 1.4e-06 58.2 123 26.0
CAN.G220.42 Capsicum annuum HOM05D000336 ORTHO05D002705 1.9e-06 57.8 120 25.8
Lsat_1_v5_gn_1_75080 Lactuca sativa HOM05D000336 ORTHO05D002705 1.9e-06 57.8 130 26.9
Pp3c19_8020 Physcomitrium patens HOM05D000336 ORTHO05D002705 1.9e-06 57.8 66 42.4
Pp3c21_9250 Physcomitrium patens HOM05D000336 ORTHO05D002705 1.9e-06 57.8 105 32.4
Potri.010G219200 Populus trichocarpa HOM05D000336 ORTHO05D002705 1.9e-06 57.8 119 31.1
TAR633G1495 Trochodendron aralioides HOM05D000336 ORTHO05D002705 1.9e-06 57.8 99 30.3
Lj2g0014987 Lotus japonicus HOM05D000336 ORTHO05D002705 4.1e-06 56.6 88 30.7
Psat4g111960 Pisum sativum HOM05D000336 ORTHO05D002705 4.1e-06 56.6 130 27.7
Sabra10G0169200 Salix brachista HOM05D000336 ORTHO05D002705 4.1e-06 56.6 119 28.6
Sc05g0003330 Simmondsia chinensis HOM05D000336 ORTHO05D002705 4.1e-06 56.6 123 27.6
Peaxi162Scf00602g00315 Petunia axillaris HOM05D000336 ORTHO05D002705 5.4e-06 56.2 123 25.2
Gorai.011G128000 Gossypium raimondii HOM05D006554 ORTHO05D008778 7.1e-06 55.8 107 38.3
Aqoxy2G01232 Aquilegia oxysepala HOM05D000336 ORTHO05D002705 9.2e-06 55.5 115 27.8
Gorai.001G185000 Gossypium raimondii HOM05D004314 ORTHO05D018179 9.2e-06 55.5 106 37.7


User provided reference genes

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