Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g067820.4 Solanum lycopersicum HOM05D005666 ORTHO05D007183 0.0e+00 1366.7 696 100.0
Sopen02g016930 Solanum pennellii HOM05D005666 ORTHO05D007183 0.0e+00 1274.2 703 94.0
PGSC0003DMG400006959 Solanum tuberosum HOM05D005666 ORTHO05D007183 0.0e+00 1250.3 691 93.3
CAN.G1057.3 Capsicum annuum HOM05D005666 ORTHO05D007183 0.0e+00 1181.0 694 87.5
Nitab4.5_0008365g0020 Nicotiana tabacum HOM05D005666 ORTHO05D007183 0.0e+00 1105.5 706 81.7
Nitab4.5_0002529g0030 Nicotiana tabacum HOM05D005666 ORTHO05D007183 0.0e+00 1087.8 688 82.6
Peaxi162Scf00080g00117 Petunia axillaris HOM05D005666 ORTHO05D007183 2.9e-299 1031.6 702 76.9
Cc07_g01670 Coffea canephora HOM05D005666 ORTHO05D007183 8.7e-248 860.5 703 64.6
vmacro18287 Vaccinium macrocarpon HOM05D005666 ORTHO05D007183 5.7e-247 857.8 696 64.1
Actinidia35772 Actinidia chinensis HOM05D005666 ORTHO05D007183 2.4e-245 852.4 702 62.5
Rhsim10G0213300 Rhododendron simsii HOM05D005666 ORTHO05D007183 1.9e-242 842.8 720 61.8
Hma1.2p1_0999F.1_g246210 Hydrangea macrophylla HOM05D005666 ORTHO05D007183 1.9e-239 832.8 716 61.3
Migut.K01395 Erythranthe guttata HOM05D005666 ORTHO05D007183 1.1e-237 827.0 695 63.5
Rhsim08G0049000 Rhododendron simsii HOM05D005666 ORTHO05D007183 4.2e-234 815.1 696 62.1
Gorai.012G064300 Gossypium raimondii HOM05D005666 ORTHO05D007183 1.7e-230 803.1 706 61.0
Gohir.D04G057600 Gossypium hirsutum HOM05D005666 ORTHO05D007183 1.8e-229 799.7 705 60.7
SalBow7G2092 Salvia bowleyana HOM05D005666 ORTHO05D007183 4.1e-229 798.5 697 61.1
QL02p074714 Quercus lobata HOM05D005666 ORTHO05D007183 1.5e-228 796.6 698 59.5
Gohir.A05G355700 Gossypium hirsutum HOM05D005666 ORTHO05D007183 1.0e-227 793.9 699 60.8
SGA_v2.0_scaffold47G17503 Striga asiatica HOM05D005666 ORTHO05D007183 5.5e-226 788.1 698 60.2
COL.COLO4_29116 Corchorus olitorius HOM05D005666 ORTHO05D007183 3.9e-224 781.9 729 58.4
CANSAT64G2468 Cannabis sativa HOM05D005666 ORTHO05D007183 7.4e-223 777.7 696 58.9
Manes.17G112200 Manihot esculenta HOM05D005666 ORTHO05D007183 1.7e-222 776.5 701 58.6
CSS0006540 Camellia sinensis var. sinensis HOM05D005666 ORTHO05D007183 1.1e-221 773.9 636 63.5
Atru.chr6.2394 Acer truncatum HOM05D005666 ORTHO05D007183 1.4e-221 773.5 704 58.9
GSVIVG01032407001 Vitis vinifera HOM05D005666 ORTHO05D007183 5.3e-221 771.5 701 58.9
Sabra16G0224200 Salix brachista HOM05D005666 ORTHO05D007183 2.0e-220 769.6 701 57.9
Duzib147G1248 Durio zibethinus HOM05D005666 ORTHO05D007183 1.3e-219 766.9 699 57.9
Potri.001G345200 Populus trichocarpa HOM05D005666 ORTHO05D007183 1.3e-219 766.9 702 57.5
TWI56G0621 Tripterygium wilfordii HOM05D005666 ORTHO05D007183 2.9e-219 765.8 706 57.6
Haze_10618 Corylus avellana HOM05D005666 ORTHO05D007183 6.5e-219 764.6 693 59.0
TAR371G0349 Trochodendron aralioides HOM05D005666 ORTHO05D007183 8.5e-219 764.2 703 57.5
CiPaw.03G043800 Carya illinoinensis HOM05D005666 ORTHO05D007183 1.1e-218 763.8 688 58.4
MD09G1027000 Malus domestica HOM05D005666 ORTHO05D007183 1.5e-218 763.5 703 58.0
MD17G1027000 Malus domestica HOM05D005666 ORTHO05D007183 2.3e-216 756.1 704 58.4
RcHm_v2.0_Chr2g0172791 Rosa chinensis HOM05D005666 ORTHO05D007183 3.0e-216 755.7 726 56.2
ECA246G2761 Erigeron canadensis HOM05D005666 ORTHO05D007183 4.0e-216 755.4 705 57.4
Dinv33442 Davidia involucrata HOM05D005666 ORTHO05D007183 1.2e-215 753.8 666 60.2
HanXRQChr15g0475291 Helianthus annuus HOM05D005666 ORTHO05D007183 2.6e-215 752.7 696 58.2
DCAR_027499 Daucus carota HOM05D005666 ORTHO05D007183 4.4e-215 751.9 671 58.3
Ca_04159_v3 Cicer arietinum L. HOM05D005666 ORTHO05D007183 7.5e-215 751.1 693 58.0
ClCG09G019260 Citrullus lanatus HOM05D005666 ORTHO05D007183 4.8e-214 748.4 705 56.3
TPR.G14074 Trifolium pratense HOM05D005666 ORTHO05D007183 4.8e-214 748.4 697 57.8
Cpa.g.sc130.81 Carica papaya HOM05D005666 ORTHO05D007183 1.1e-213 747.3 706 57.2
Lalb_Chr12g0199101 Lupinus albus HOM05D005666 ORTHO05D007183 2.4e-213 746.1 695 57.7
CsaV3_5G027130 Cucumis sativus L. HOM05D005666 ORTHO05D007183 3.1e-213 745.7 702 55.8
Glyma.05G003600 Glycine max HOM05D005666 ORTHO05D007183 3.1e-213 745.7 695 58.7
Lj2g0025454 Lotus japonicus HOM05D005666 ORTHO05D007183 5.3e-213 745.0 677 58.6
Phvul.004G006900 Phaseolus vulgaris HOM05D005666 ORTHO05D007183 7.0e-213 744.6 696 57.5
Ciclev10014455m.g Citrus clementina HOM05D005666 ORTHO05D007183 9.1e-213 744.2 701 56.9
Eucgr.L01920 Eucalyptus grandis HOM05D005666 ORTHO05D007183 2.0e-212 743.0 707 56.4
Medtr8g094170 Medicago truncatula HOM05D005666 ORTHO05D007183 5.0e-211 738.4 687 57.5
Thecc.04G017300 Theobroma cacao HOM05D005666 ORTHO05D007183 6.5e-211 738.0 703 56.3
MELO3C021580.2 Cucumis melo HOM05D005666 ORTHO05D007183 1.1e-210 737.3 702 56.1
VMungo0464G0315 Vigna mungo HOM05D005666 ORTHO05D007183 1.1e-210 737.3 705 56.5
FAN14G3607 Fragaria x ananassa HOM05D005666 ORTHO05D007183 4.2e-210 735.3 730 54.5
FAN05G0542 Fragaria x ananassa HOM05D005666 ORTHO05D007183 5.5e-210 734.9 746 53.9
Oeu048621.1 Olea europaea HOM05D005666 ORTHO05D007183 3.6e-209 732.3 639 60.9
PGR083G1531 Punica granatum HOM05D005666 ORTHO05D007183 1.0e-208 730.7 700 56.7
Lalb_Chr13g0300491 Lupinus albus HOM05D005666 ORTHO05D007183 2.3e-208 729.6 696 55.9
Nn3g16730 Nelumbo nucifera HOM05D005666 ORTHO05D007183 6.8e-208 728.0 691 56.6
Sed0018750 Sechium edule HOM05D005666 ORTHO05D007183 6.8e-208 728.0 716 54.6
FAN02G4175 Fragaria x ananassa HOM05D005666 ORTHO05D007183 8.8e-208 727.6 739 53.6
FAN09G4801 Fragaria x ananassa HOM05D005666 ORTHO05D007183 8.8e-208 727.6 732 53.7
Lju41A42G100 Lonicera japonica HOM05D005666 ORTHO05D007183 2.6e-207 726.1 607 62.8
Hma1.2p1_0999F.1_g246220 Hydrangea macrophylla HOM05D005666 ORTHO05D007183 4.8e-206 721.8 601 62.9
Sc03g0007440 Simmondsia chinensis HOM05D005666 ORTHO05D007183 1.1e-205 720.7 698 55.6
Hund22837 Selenicereus undatus HOM05D005666 ORTHO05D007183 2.3e-203 713.0 706 55.2
Ah.05g168070 Amaranthus hybridus HOM05D005666 ORTHO05D007183 1.9e-202 709.9 701 54.2
AUR62026681 Chenopodium quinoa HOM05D005666 ORTHO05D007183 4.7e-201 705.3 705 54.0
arahy.Tifrunner.gnm1.ann1.XQUA9L Arachis hypogaea HOM05D005666 ORTHO05D007183 3.0e-200 702.6 684 54.4
HanXRQChr17g0548481 Helianthus annuus HOM05D005666 ORTHO05D007183 4.0e-200 702.2 694 54.2
Lsat_1_v5_gn_0_47721 Lactuca sativa HOM05D005666 ORTHO05D007183 5.2e-200 701.8 669 56.8
Aqoxy3G01199 Aquilegia oxysepala HOM05D005666 ORTHO05D007183 1.8e-197 693.3 709 53.3
arahy.Tifrunner.gnm1.ann1.D3X7TW Arachis hypogaea HOM05D005666 ORTHO05D007183 1.6e-196 690.3 678 54.1
Prupe.3G291700 Prunus persica HOM05D005666 ORTHO05D007183 1.0e-195 687.6 639 57.1
PSO017G6377 Papaver somniferum HOM05D005666 ORTHO05D007183 2.9e-195 686.0 691 53.3
BolC9t58577H Brassica oleracea HOM05D005666 ORTHO05D007183 7.3e-194 681.4 701 54.5
PSO478G0823 Papaver somniferum HOM05D005666 ORTHO05D007183 1.2e-193 680.6 691 53.0
DCAR_011253 Daucus carota HOM05D005666 ORTHO05D007183 8.0e-193 677.9 763 50.3
FvH4_6g51190 Fragaria vesca HOM05D005666 ORTHO05D007183 2.3e-192 676.4 671 54.2
Thhalv10012831m.g Eutrema salsugineum HOM05D005666 ORTHO05D007183 8.9e-192 674.5 700 53.4
AT5G19130 Arabidopsis thaliana HOM05D005666 ORTHO05D007183 1.5e-191 673.7 700 53.9
BcaC04g18594 Brassica carinata HOM05D005666 ORTHO05D007183 2.0e-191 673.3 701 54.5
C09p57110 Brassica napus HOM05D005666 ORTHO05D007183 2.0e-191 673.3 701 54.4
A10p20490 Brassica napus HOM05D005666 ORTHO05D007183 3.4e-191 672.5 701 53.9
BraA10t44118Z Brassica rapa HOM05D005666 ORTHO05D007183 4.4e-191 672.2 701 54.2
BcaB08g36600 Brassica carinata HOM05D005666 ORTHO05D007183 5.8e-191 671.8 700 53.4
AL6G30550 Arabidopsis lyrata HOM05D005666 ORTHO05D007183 9.8e-191 671.0 699 53.9
Carub.0006s1746 Capsella rubella HOM05D005666 ORTHO05D007183 9.2e-189 664.5 700 53.0
Aa31LG11G15280 Aethionema arabicum HOM05D005666 ORTHO05D007183 7.8e-188 661.4 688 53.1
CSS0011984 Camellia sinensis var. sinensis HOM05D005666 ORTHO05D007183 1.7e-187 660.2 591 60.4
Sp6g25230 Schrenkiella parvula HOM05D005666 ORTHO05D007183 5.0e-187 658.7 701 53.4
Glyma.19G004600 Glycine max HOM05D005666 ORTHO05D007183 4.0e-184 649.0 640 55.9
EL10Ac1g01578 Beta vulgaris HOM05D005666 ORTHO05D007183 2.6e-183 646.4 721 52.0
Psat1g054440 Pisum sativum HOM05D005666 ORTHO05D007183 1.3e-182 644.0 595 57.1
unitig_747.g21863 Utricularia gibba HOM05D005666 ORTHO05D007183 2.4e-181 639.8 704 51.4
MBI16_g31718_MAGBIO Magnolia biondii HOM05D005666 ORTHO05D007183 1.1e-176 624.4 703 49.8
Zm00001eb156580 Zea mays HOM05D005666 ORTHO05D007183 1.2e-175 620.9 730 47.8
CDE05G2460 Ceratophyllum demersum HOM05D005666 ORTHO05D007183 1.7e-174 617.1 692 48.4
FAN05G2905 Fragaria x ananassa HOM05D005666 ORTHO05D007183 1.1e-173 614.4 639 54.0
THA.LOC104824726 Tarenaya hassleriana HOM05D005666 ORTHO05D007183 5.1e-171 605.5 701 50.4
Eucgr.J02243 Eucalyptus grandis HOM05D005666 ORTHO05D007183 2.1e-161 573.5 525 58.5
HPP92_013793 Vanilla planifolia HOM05D005666 ORTHO05D007183 1.7e-158 563.9 669 49.0
Actinidia16943 Actinidia chinensis HOM05D005666 ORTHO05D007183 3.5e-156 556.2 625 50.7
vmacro06910 Vaccinium macrocarpon HOM05D005666 ORTHO05D007183 7.6e-151 538.5 529 57.5
CSS0008870 Camellia sinensis var. sinensis HOM05D005666 ORTHO05D007183 3.9e-147 526.2 421 65.8
ATR0686G164 Amborella trichopoda HOM05D005666 ORTHO05D007183 8.7e-147 525.0 593 47.7
CARHR193820 Cardamine hirsuta HOM05D005666 ORTHO05D007183 1.4e-128 464.5 486 53.1
BcaB05g23370 Brassica carinata HOM05D005666 ORTHO05D007183 3.1e-120 436.8 690 43.9
AUR62040590 Chenopodium quinoa HOM05D005666 ORTHO05D007183 1.5e-111 407.9 428 53.3
AagrBONN_evm.TU.Sc2ySwM_344.4982 Anthoceros agrestis HOM05D005666 ORTHO05D007183 7.0e-104 382.5 760 35.7
Mapoly0008s0195 Marchantia polymorpha HOM05D005666 ORTHO05D007183 8.8e-99 365.5 752 34.3
SMO134G0274 Selaginella moellendorffii HOM05D005666 ORTHO05D007183 5.5e-93 346.3 720 34.0
Pp3c22_6140 Physcomitrium patens HOM05D005666 ORTHO05D007183 2.4e-80 304.3 480 39.8
THA.LOC109116951 Tarenaya hassleriana HOM05D005666 ORTHO05D007183 1.7e-73 281.6 302 53.3
SEGI_39396 Sequoiadendron giganteum HOM05D005666 ORTHO05D007183 1.3e-70 271.9 332 46.1
ATR0762G005 Amborella trichopoda HOM05D005666 ORTHO05D007183 1.9e-69 268.1 324 44.4
SHI16418 Sapria himalayana HOM05D005666 ORTHO05D007183 6.4e-57 226.5 283 47.3
ATR0919G001 Amborella trichopoda HOM05D005666 ORTHO05D007183 1.1e-48 199.1 236 46.2
Os01g0682200 Oryza sativa ssp. japonica HOM05D005666 ORTHO05D007183 2.6e-42 177.9 240 42.1
TPR.G20372 Trifolium pratense HOM05D005666 ORTHO05D007183 2.7e-39 167.9 162 52.5
SHI16416 Sapria himalayana HOM05D005666 ORTHO05D007183 9.0e-35 152.9 266 39.5
CBR_g49194 Chara braunii HOM05D005666 ORTHO05D007183 3.0e-30 137.9 470 27.7
THA.LOC104820325 Tarenaya hassleriana HOM05D005666 ORTHO05D007183 7.4e-29 133.3 151 49.7
Oeu048620.1 Olea europaea HOM05D005666 ORTHO05D007183 1.6e-23 115.5 75 73.3
Oeu030978.1 Olea europaea HOM05D005666 ORTHO05D007183 7.4e-21 106.7 99 56.6
MCO10G117 Micromonas commoda HOM05D005666 ORTHO05D007183 2.1e-20 105.1 551 24.7
CiPaw.04G028500 Carya illinoinensis HOM05D005666 ORTHO05D007183 2.5e-13 81.6 63 71.4
A02p05250 Brassica napus HOM05D005666 ORTHO05D007183 3.3e-13 81.3 290 28.3
BolC2t06938H Brassica oleracea HOM05D005666 ORTHO05D043081 6.9e-11 73.6 68 52.9
Thecc.05G064500 Theobroma cacao HOM05D005666 ORTHO05D007183 6.9e-11 73.6 101 41.6
SEGI_03684 Sequoiadendron giganteum HOM05D005666 ORTHO05D007183 5.0e-09 67.4 81 43.2
FvH4_6g51172 Fragaria vesca HOM05D005666 ORTHO05D007183 1.4e-08 65.9 61 55.7


User provided reference genes

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