Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g067480.3 Solanum lycopersicum HOM05D002474 ORTHO05D006727 5.8e-283 976.9 486 100.0
Sopen02g016630 Solanum pennellii HOM05D002474 ORTHO05D006727 1.5e-275 952.2 479 98.7
PGSC0003DMG400006940 Solanum tuberosum HOM05D002474 ORTHO05D006727 6.7e-271 936.8 479 97.1
CAN.G1128.5 Capsicum annuum HOM05D002474 ORTHO05D006727 3.8e-258 894.4 479 92.1
Nitab4.5_0006062g0010 Nicotiana tabacum HOM05D002474 ORTHO05D006727 4.1e-244 847.8 472 89.0
Nitab4.5_0002699g0040 Nicotiana tabacum HOM05D002474 ORTHO05D006727 2.5e-233 812.0 440 90.0
Nitab4.5_0023901g0010 Nicotiana tabacum HOM05D002474 ORTHO05D006727 6.2e-216 754.2 406 91.4
Peaxi162Scf00059g00319 Petunia axillaris HOM05D002474 ORTHO05D006727 3.1e-207 725.3 455 81.3
Atru.chr8.2476 Acer truncatum HOM05D002474 ORTHO05D006727 4.4e-198 694.9 471 71.8
Migut.K01338 Erythranthe guttata HOM05D002474 ORTHO05D006727 8.4e-197 690.6 466 72.5
QL02p080225 Quercus lobata HOM05D002474 ORTHO05D006727 3.2e-196 688.7 473 71.7
HanXRQChr17g0547501 Helianthus annuus HOM05D002474 ORTHO05D006727 3.3e-193 678.7 476 71.4
Oeu033341.3 Olea europaea HOM05D002474 ORTHO05D006727 7.3e-193 677.6 492 69.5
CSS0021046 Camellia sinensis var. sinensis HOM05D002474 ORTHO05D006727 1.4e-191 673.3 472 70.8
Nn4g23008 Nelumbo nucifera HOM05D002474 ORTHO05D006727 4.0e-191 671.8 459 70.8
ECA246G0556 Erigeron canadensis HOM05D002474 ORTHO05D006727 5.2e-191 671.4 447 73.6
Lsat_1_v5_gn_3_102300 Lactuca sativa HOM05D002474 ORTHO05D006727 1.3e-189 666.8 471 70.1
Hma1.2p1_0449F.1_g154950 Hydrangea macrophylla HOM05D002474 ORTHO05D006727 1.7e-189 666.4 423 76.4
Thecc.09G254500 Theobroma cacao HOM05D002474 ORTHO05D006727 8.4e-189 664.1 474 69.4
Gorai.013G255100 Gossypium raimondii HOM05D002474 ORTHO05D006727 1.9e-188 662.9 475 70.1
Eucgr.J02138 Eucalyptus grandis HOM05D002474 ORTHO05D006727 7.1e-188 661.0 475 68.0
MELO3C021965.2 Cucumis melo HOM05D002474 ORTHO05D006727 9.3e-188 660.6 427 74.9
FvH4_6g49390 Fragaria vesca HOM05D002474 ORTHO05D006727 1.6e-187 659.8 438 72.4
Gohir.A13G220300 Gossypium hirsutum HOM05D002474 ORTHO05D006727 2.7e-187 659.1 469 69.9
CsaV3_5G037800 Cucumis sativus L. HOM05D002474 ORTHO05D006727 1.7e-186 656.4 434 73.7
RcHm_v2.0_Chr2g0169251 Rosa chinensis HOM05D002474 ORTHO05D006727 5.1e-186 654.8 476 66.8
Potri.004G130000 Populus trichocarpa HOM05D002474 ORTHO05D006727 1.1e-185 653.7 467 69.2
PSO478G4089 Papaver somniferum HOM05D002474 ORTHO05D006727 3.3e-185 652.1 413 75.1
RhsimUnG0054500 Rhododendron simsii HOM05D002474 ORTHO05D006727 9.6e-185 650.6 486 67.9
Ciclev10011620m.g Citrus clementina HOM05D002474 ORTHO05D006727 6.2e-184 647.9 472 68.4
GSVIVG01032597001 Vitis vinifera HOM05D002474 ORTHO05D006727 2.6e-182 642.5 412 75.5
CiPaw.04G020500 Carya illinoinensis HOM05D002474 ORTHO05D006727 1.3e-181 640.2 472 69.1
PSO161G0033 Papaver somniferum HOM05D002474 ORTHO05D006727 8.4e-181 637.5 413 73.8
Phvul.004G025500 Phaseolus vulgaris HOM05D002474 ORTHO05D006727 4.2e-180 635.2 464 65.7
TAR629G1594 Trochodendron aralioides HOM05D002474 ORTHO05D006727 1.2e-179 633.6 435 71.7
Psat1g077640 Pisum sativum HOM05D002474 ORTHO05D006727 1.6e-179 633.3 425 69.9
TPR.G4252 Trifolium pratense HOM05D002474 ORTHO05D006727 2.1e-179 632.9 422 69.7
Lalb_Chr06g0175531 Lupinus albus HOM05D002474 ORTHO05D006727 1.0e-178 630.6 429 69.2
Aqoxy3G00804 Aquilegia oxysepala HOM05D002474 ORTHO05D006727 1.3e-178 630.2 411 74.2
Gohir.D13G224300 Gossypium hirsutum HOM05D002474 ORTHO05D006727 2.3e-178 629.4 484 66.9
Medtr6g011270 Medicago truncatula HOM05D002474 ORTHO05D006727 2.3e-178 629.4 471 64.3
Lj2g0026556 Lotus japonicus HOM05D002474 ORTHO05D006727 3.9e-178 628.6 477 64.2
Cfa007503 Carpinus fangiana HOM05D002474 ORTHO05D006727 1.1e-177 627.1 505 64.6
Sc11g0006920 Simmondsia chinensis HOM05D002474 ORTHO05D006727 6.2e-176 621.3 453 68.9
Ca_04259_v3 Cicer arietinum L. HOM05D002474 ORTHO05D006727 5.3e-175 618.2 471 63.5
arahy.Tifrunner.gnm1.ann1.B2F8E8 Arachis hypogaea HOM05D002474 ORTHO05D006727 9.9e-174 614.0 460 64.6
Haze_14590 Corylus avellana HOM05D002474 ORTHO05D006727 2.9e-173 612.5 477 66.0
PGR083G0251 Punica granatum HOM05D002474 ORTHO05D006727 4.2e-172 608.6 419 70.9
THA.LOC104805441 Tarenaya hassleriana HOM05D002474 ORTHO05D006727 2.1e-171 606.3 443 66.4
unitig_748.g8621 Utricularia gibba HOM05D002474 ORTHO05D006727 6.0e-171 604.7 443 65.7
Duzib168G1861 Durio zibethinus HOM05D002474 ORTHO05D006727 1.3e-170 603.6 407 72.5
COL.COLO4_24935 Corchorus olitorius HOM05D002474 ORTHO05D006727 2.3e-170 602.8 411 72.3
Sabra04G0087600 Salix brachista HOM05D002474 ORTHO05D006727 3.0e-170 602.4 513 61.2
SGA_v2.0_scaffold224G42953 Striga asiatica HOM05D002474 ORTHO05D006727 6.7e-170 601.3 435 68.3
CARHR262240 Cardamine hirsuta HOM05D002474 ORTHO05D006727 5.6e-169 598.2 434 67.5
FAN02G0112 Fragaria x ananassa HOM05D002474 ORTHO05D006727 3.7e-168 595.5 472 63.8
Carub.0007s3579 Capsella rubella HOM05D002474 ORTHO05D006727 4.8e-168 595.1 445 65.4
Cpa.g.sc14.49 Carica papaya HOM05D002474 ORTHO05D006727 4.8e-168 595.1 480 64.2
CDE08G1502 Ceratophyllum demersum HOM05D002474 ORTHO05D006727 4.8e-168 595.1 437 64.8
AL7G50200 Arabidopsis lyrata HOM05D002474 ORTHO05D006727 9.0e-167 590.9 441 66.0
DCAR_011168 Daucus carota HOM05D002474 ORTHO05D006727 3.4e-166 589.0 405 71.9
AT5G39940 Arabidopsis thaliana HOM05D002474 ORTHO05D006727 1.3e-165 587.0 446 65.2
Aa31LG9G1670 Aethionema arabicum HOM05D002474 ORTHO05D006727 4.9e-165 585.1 444 65.1
Glyma.19G019000 Glycine max HOM05D002474 ORTHO05D006727 4.9e-165 585.1 468 61.8
Os12g0638800 Oryza sativa ssp. japonica HOM05D002474 ORTHO05D006727 1.1e-164 583.9 418 66.5
FAN14G2185 Fragaria x ananassa HOM05D002474 ORTHO05D006727 5.5e-164 581.6 504 60.1
TWI60G0106 Tripterygium wilfordii HOM05D002474 ORTHO05D006727 1.2e-163 580.5 471 63.9
VMungo0464G0136 Vigna mungo HOM05D002474 ORTHO05D006727 2.1e-163 579.7 484 60.1
ATR0609G116 Amborella trichopoda HOM05D002474 ORTHO05D006727 4.6e-163 578.6 443 64.3
BraA04t16928Z Brassica rapa HOM05D002474 ORTHO05D006727 1.3e-162 577.0 438 65.3
Hund13252 Selenicereus undatus HOM05D002474 ORTHO05D006727 1.8e-162 576.6 494 60.7
Thhalv10028129m.g Eutrema salsugineum HOM05D002474 ORTHO05D006727 6.7e-162 574.7 444 65.3
Rhsim10G0032000 Rhododendron simsii HOM05D002474 ORTHO05D006727 2.1e-160 569.7 466 63.3
Zm00001eb033100 Zea mays HOM05D002474 ORTHO05D006727 3.7e-160 568.9 476 59.5
CANSAT64G2711 Cannabis sativa HOM05D002474 ORTHO05D006727 6.3e-160 568.2 468 63.0
arahy.Tifrunner.gnm1.ann1.DRNA5E Arachis hypogaea HOM05D002474 ORTHO05D006727 3.1e-159 565.8 460 60.7
Ah.12g065360 Amaranthus hybridus HOM05D002474 ORTHO05D006727 1.2e-158 563.9 421 66.0
EL10Ac2g02929 Beta vulgaris HOM05D002474 ORTHO05D006727 5.9e-158 561.6 466 62.2
FAN05G2709 Fragaria x ananassa HOM05D002474 ORTHO05D006727 1.3e-157 560.5 473 61.5
ClCG09G018440 Citrullus lanatus HOM05D002474 ORTHO05D006727 3.8e-157 558.9 566 53.9
Sed0010242 Sechium edule HOM05D002474 ORTHO05D006727 5.0e-157 558.5 379 71.2
FAN09G4837 Fragaria x ananassa HOM05D002474 ORTHO05D006727 4.6e-155 552.0 504 57.9
Dinv33713 Davidia involucrata HOM05D002474 ORTHO05D006727 7.9e-155 551.2 342 77.8
AUR62031654 Chenopodium quinoa HOM05D002474 ORTHO05D006727 1.0e-154 550.8 425 64.5
CSS0037906 Camellia sinensis var. sinensis HOM05D002474 ORTHO05D006727 1.6e-152 543.5 347 75.5
BcaB06g27397 Brassica carinata HOM05D002474 ORTHO05D006727 4.4e-145 518.8 401 64.8
C04p46420 Brassica napus HOM05D002474 ORTHO05D006727 1.4e-143 513.8 397 64.0
AagrBONN_evm.TU.Sc2ySwM_369.199 Anthoceros agrestis HOM05D002474 ORTHO05D006727 2.5e-140 503.1 434 56.5
vmacro05750 Vaccinium macrocarpon HOM05D002474 ORTHO05D006727 5.5e-140 501.9 457 58.9
A04p12710 Brassica napus HOM05D002474 ORTHO05D006727 3.9e-138 495.7 397 62.0
Pp3c23_2270 Physcomitrium patens HOM05D002474 ORTHO05D006727 2.6e-137 493.0 439 55.4
Prupe.3G272800 Prunus persica HOM05D002474 ORTHO05D006727 6.3e-136 488.4 356 68.0
HanXRQChr16g0519921 Helianthus annuus HOM05D002474 ORTHO05D006727 3.1e-135 486.1 324 73.8
SalBow1G0883 Salvia bowleyana HOM05D002474 ORTHO05D006727 3.8e-133 479.2 471 56.9
Mapoly0035s0063 Marchantia polymorpha HOM05D002474 ORTHO05D006727 9.4e-132 474.6 407 56.8
AUR62018296 Chenopodium quinoa HOM05D002474 ORTHO05D006727 8.8e-130 468.0 425 57.9
Hma1.2p1_0449F.1_g154940 Hydrangea macrophylla HOM05D002474 ORTHO05D006727 6.3e-120 435.3 323 68.4
SMO137G0254 Selaginella moellendorffii HOM05D002474 ORTHO05D006727 6.5e-117 425.2 459 48.8
Manes.S095220 Manihot esculenta HOM05D002474 ORTHO05D006727 8.3e-112 408.3 301 68.1
HPP92_014139 Vanilla planifolia HOM05D002474 ORTHO05D006727 9.2e-103 378.3 411 48.7
Cc07_g02920 Coffea canephora HOM05D002474 ORTHO05D006727 1.0e-101 374.8 250 74.4
QL02p080117 Quercus lobata HOM05D002474 ORTHO05D006727 5.4e-95 352.4 268 66.0
QL02p080121 Quercus lobata HOM05D002474 ORTHO05D006727 5.8e-81 305.8 186 78.0
CBR_g50657 Chara braunii HOM05D002474 ORTHO05D006727 2.1e-78 297.4 297 50.8
Rhsim10G0031600 Rhododendron simsii HOM05D002474 ORTHO05D006727 7.3e-76 288.9 241 63.1
Cc07_g02930 Coffea canephora HOM05D002474 ORTHO05D006727 9.6e-76 288.5 184 73.9
Lj7A402G46 Lonicera japonica HOM05D002474 ORTHO05D006727 6.9e-74 282.3 296 55.1
Hund13251 Selenicereus undatus HOM05D002474 ORTHO05D006727 2.4e-66 257.3 184 69.6
BolC4t26228H Brassica oleracea HOM05D002474 ORTHO05D006727 2.1e-59 234.2 184 64.1
Lsat_1_v5_gn_6_77521 Lactuca sativa HOM05D002474 ORTHO05D006727 4.0e-50 203.4 257 45.1
SpUN0485_0010 Schrenkiella parvula HOM05D002474 ORTHO05D006727 1.3e-43 181.8 130 69.2
HanXRQChr09g0265421 Helianthus annuus HOM05D002474 ORTHO05D006727 5.3e-42 176.4 121 66.9
CBR_g59258 Chara braunii HOM05D002474 ORTHO05D006727 5.0e-40 169.9 124 63.7
SEGI_13584 Sequoiadendron giganteum HOM05D002474 ORTHO05D006727 2.5e-39 167.5 152 54.6
Lj7A402G47 Lonicera japonica HOM05D002474 ORTHO05D006727 1.2e-38 165.2 155 57.4
Actinidia35021 Actinidia chinensis HOM05D002474 ORTHO05D006727 1.8e-34 151.4 306 38.2
Lsat_1_v5_gn_2_107941 Lactuca sativa HOM05D002474 ORTHO05D005260 1.2e-33 148.7 236 38.1
Sp7g01810 Schrenkiella parvula HOM05D002474 ORTHO05D006727 8.5e-32 142.5 166 49.4
SEGI_37465 Sequoiadendron giganteum HOM05D002474 ORTHO05D006727 3.6e-30 137.1 91 64.8
C09p60950 Brassica napus HOM05D002474 ORTHO05D006727 1.8e-26 124.8 111 55.0
MCO07G529 Micromonas commoda HOM05D002474 ORTHO05D006727 2.9e-24 117.5 506 28.3
MBI04_g20672_MAGBIO Magnolia biondii HOM05D002474 ORTHO05D006727 3.8e-24 117.1 223 36.3
BolC9t56457H Brassica oleracea HOM05D002474 ORTHO05D006727 9.4e-23 112.5 103 53.4
C09p36190 Brassica napus HOM05D002474 ORTHO05D006727 2.8e-19 100.9 96 52.1
Peaxi162Scf00036g01918 Petunia axillaris HOM05D002474 ORTHO05D006727 1.6e-17 95.1 56 78.6
Peaxi162Scf00781g00210 Petunia axillaris HOM05D002474 ORTHO05D006727 3.5e-17 94.0 56 76.8
Cre09.g389400 Chlamydomonas reinhardtii HOM05D002474 ORTHO05D006727 7.2e-15 86.3 316 26.3
PRCOL_00006911 Prasinoderma coloniale HOM05D002474 ORTHO05D006727 7.2e-15 86.3 483 25.5
BcaC04g18910 Brassica carinata HOM05D002474 ORTHO05D006727 1.2e-14 85.5 142 38.7
MBI04_g20673_MAGBIO Magnolia biondii HOM05D002474 ORTHO05D006727 1.6e-14 85.1 77 48.1
FAN10G3970 Fragaria x ananassa HOM05D002474 ORTHO05D006727 8.0e-14 82.8 46 82.6
FAN10G3068 Fragaria x ananassa HOM05D002474 ORTHO05D006727 8.8e-13 79.3 45 80.0
Rhsim10G0031800 Rhododendron simsii HOM05D002474 ORTHO05D006727 1.5e-12 78.6 54 63.0
vmacro05749 Vaccinium macrocarpon HOM05D002474 ORTHO05D006727 5.9e-09 66.6 32 93.8
vmacro03926 Vaccinium macrocarpon HOM05D002474 ORTHO05D006727 3.8e-08 63.9 31 90.3
Glyma.13G065601 Glycine max HOM05D002474 ORTHO05D006727 6.5e-08 63.2 64 54.7


User provided reference genes

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