Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g067090.4 Solanum lycopersicum HOM05D004112 ORTHO05D004739 2.8e-280 968.0 509 100.0
PGSC0003DMG400025149 Solanum tuberosum HOM05D004112 ORTHO05D004739 4.9e-248 860.9 510 87.8
Sopen02g016280 Solanum pennellii HOM05D004112 ORTHO05D004739 9.3e-231 803.5 449 94.4
CAN.G979.7 Capsicum annuum HOM05D004112 ORTHO05D004739 5.1e-189 664.8 510 71.8
Nitab4.5_0005916g0010 Nicotiana tabacum HOM05D002060 ORTHO05D002098 2.0e-180 636.3 490 73.5
Nitab4.5_0000212g0200 Nicotiana tabacum HOM05D002060 ORTHO05D002098 4.1e-154 548.9 525 62.5
Peaxi162Scf00117g00212 Petunia axillaris HOM05D004112 ORTHO05D004739 6.6e-136 488.4 522 57.7
Peaxi162Scf00128g00449 Petunia axillaris HOM05D004112 ORTHO05D004739 2.3e-80 303.9 723 34.6
Nitab4.5_0001978g0040 Nicotiana tabacum HOM05D004112 ORTHO05D004739 2.2e-75 287.3 450 46.9
Solyc05g013740.3 Solanum lycopersicum HOM05D004112 ORTHO05D004739 6.5e-75 285.8 419 46.3
Sopen05g008660 Solanum pennellii HOM05D004112 ORTHO05D004739 1.4e-74 284.6 419 45.8
Nitab4.5_0000524g0060 Nicotiana tabacum HOM05D004112 ORTHO05D004739 4.1e-69 266.5 437 44.9
Gohir.D01G152000 Gossypium hirsutum HOM05D004112 ORTHO05D004739 1.2e-55 221.9 637 33.1
CSS0023851 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 1.3e-54 218.4 649 31.6
Thecc.02G263400 Theobroma cacao HOM05D004112 ORTHO05D004739 2.2e-54 217.6 633 33.5
Gohir.A01G158700 Gossypium hirsutum HOM05D004112 ORTHO05D004739 2.0e-52 211.1 636 31.6
Dinv14739 Davidia involucrata HOM05D004112 ORTHO05D004739 3.5e-52 210.3 608 31.4
TAR622G0947 Trochodendron aralioides HOM05D004112 ORTHO05D004739 3.8e-51 206.8 630 31.4
CSS0011275 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 6.5e-51 206.1 408 36.5
SGA_v2.0_scaffold476G52145 Striga asiatica HOM05D004112 ORTHO05D004739 4.2e-50 203.4 304 41.4
Gorai.002G188300 Gossypium raimondii HOM05D004112 ORTHO05D004739 5.5e-50 203.0 672 31.4
Migut.K00616 Erythranthe guttata HOM05D004112 ORTHO05D004739 1.2e-49 201.8 398 37.9
Actinidia15108 Actinidia chinensis HOM05D004112 ORTHO05D004739 2.7e-49 200.7 310 42.6
Actinidia37446 Actinidia chinensis HOM05D004112 ORTHO05D004739 6.1e-49 199.5 327 41.6
GSVIVG01000557001 Vitis vinifera HOM05D004112 ORTHO05D004739 6.1e-49 199.5 651 31.8
Actinidia08126 Actinidia chinensis HOM05D004112 ORTHO05D004739 1.8e-48 198.0 585 32.3
Prupe.1G242900 Prunus persica HOM05D004112 ORTHO05D004739 1.8e-48 198.0 654 30.6
Cc11_g15970 Coffea canephora HOM05D004112 ORTHO05D004739 3.0e-48 197.2 702 32.2
COL.COLO4_23486 Corchorus olitorius HOM05D004112 ORTHO05D004739 6.8e-48 196.1 619 31.7
Rhsim12G0039400 Rhododendron simsii HOM05D004112 ORTHO05D004739 1.5e-47 194.9 641 31.7
Atru.chr11.2164 Acer truncatum HOM05D004112 ORTHO05D004739 8.3e-46 189.1 322 40.4
MD13G1102900 Malus domestica HOM05D004112 ORTHO05D004739 1.4e-45 188.3 645 29.0
MD16G1103100 Malus domestica HOM05D004112 ORTHO05D004739 5.4e-45 186.4 330 40.9
PGR119G0183 Punica granatum HOM05D004112 ORTHO05D004739 1.6e-44 184.9 298 41.9
Dinv15208 Davidia involucrata HOM05D004112 ORTHO05D004739 2.0e-44 184.5 322 41.0
FAN17G0775 Fragaria x ananassa HOM05D004112 ORTHO05D004739 2.9e-43 180.6 313 41.2
Nn3g16670 Nelumbo nucifera HOM05D004112 ORTHO05D004739 2.9e-43 180.6 636 29.2
FAN07G2897 Fragaria x ananassa HOM05D004112 ORTHO05D004739 4.2e-42 176.8 303 41.6
RcHm_v2.0_Chr4g0432751 Rosa chinensis HOM05D004112 ORTHO05D004739 1.2e-41 175.3 306 40.5
Oeu059775.2 Olea europaea HOM05D004112 ORTHO05D004739 1.6e-41 174.9 356 39.6
unitig_22.g6943 Utricularia gibba HOM05D004112 ORTHO05D004739 2.8e-41 174.1 349 39.5
Haze_12270 Corylus avellana HOM05D004112 ORTHO05D004739 3.6e-41 173.7 608 31.2
Potri.008G185100 Populus trichocarpa HOM05D004112 ORTHO05D004739 3.6e-41 173.7 353 38.8
Ciclev10030867m.g Citrus clementina HOM05D004112 ORTHO05D004739 6.1e-41 172.9 303 41.6
Duzib268G0184 Durio zibethinus HOM05D004112 ORTHO05D004739 3.0e-40 170.6 626 31.0
FvH4_4g25440 Fragaria vesca HOM05D004112 ORTHO05D004739 3.0e-40 170.6 301 40.9
Sabra10G0020400 Salix brachista HOM05D004112 ORTHO05D004739 6.8e-40 169.5 335 41.5
QL03p056879 Quercus lobata HOM05D004112 ORTHO05D004739 1.5e-39 168.3 630 30.2
SalBow2G2073 Salvia bowleyana HOM05D004112 ORTHO05D004739 1.5e-39 168.3 328 38.4
FAN12G3846 Fragaria x ananassa HOM05D004112 ORTHO05D004739 2.0e-39 167.9 302 40.7
Potri.010G048700 Populus trichocarpa HOM05D004112 ORTHO05D004739 3.4e-39 167.2 353 38.2
Hma1.2p1_0815F.1_g222700 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 5.7e-39 166.4 175 55.4
Aqoxy3G01258 Aquilegia oxysepala HOM05D004112 ORTHO05D004739 1.7e-38 164.9 660 29.5
MELO3C011937.2 Cucumis melo HOM05D004112 ORTHO05D004739 2.8e-38 164.1 631 30.1
TWI36G0458 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 2.8e-38 164.1 700 28.3
ECA246G3212 Erigeron canadensis HOM05D004112 ORTHO05D004739 4.9e-38 163.3 324 36.7
Eucgr.H02474 Eucalyptus grandis HOM05D004112 ORTHO05D004739 8.3e-38 162.5 654 29.1
HanXRQChr11g0329171 Helianthus annuus HOM05D004112 ORTHO05D004739 8.3e-38 162.5 346 38.4
TWI18G0097 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 1.1e-37 162.2 285 41.4
ClCG05G025880 Citrullus lanatus HOM05D004112 ORTHO05D004739 1.8e-37 161.4 625 29.6
CiPaw.05G178200 Carya illinoinensis HOM05D004112 ORTHO05D004739 4.1e-37 160.2 622 28.8
CsaV3_5G030980 Cucumis sativus L. HOM05D004112 ORTHO05D004739 5.4e-37 159.8 623 29.5
CiPaw.06G066400 Carya illinoinensis HOM05D004112 ORTHO05D004739 9.2e-37 159.1 625 29.3
FAN22G2105 Fragaria x ananassa HOM05D004112 ORTHO05D004739 1.2e-36 158.7 304 39.1
Oeu057548.1 Olea europaea HOM05D004112 ORTHO05D004739 7.8e-36 156.0 217 44.7
vmacro16177 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 1.3e-35 155.2 293 39.2
AUR62024236 Chenopodium quinoa HOM05D004112 ORTHO05D004739 2.3e-35 154.5 346 36.7
Sed0023093 Sechium edule HOM05D004112 ORTHO05D004739 2.3e-35 154.5 301 38.9
vmacro01117 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 2.3e-35 154.5 555 30.1
arahy.Tifrunner.gnm1.ann1.B4WRN4 Arachis hypogaea HOM05D004112 ORTHO05D004739 3.9e-35 153.7 308 38.0
Manes.13G021500 Manihot esculenta HOM05D004112 ORTHO05D004739 6.6e-35 152.9 627 28.9
SHI17819 Sapria himalayana HOM05D004112 ORTHO05D004739 6.6e-35 152.9 175 52.0
Sc26g0001570 Simmondsia chinensis HOM05D004112 ORTHO05D004739 5.6e-34 149.8 276 38.4
AUR62005505 Chenopodium quinoa HOM05D004112 ORTHO05D004739 9.5e-34 149.1 650 28.6
arahy.Tifrunner.gnm1.ann1.5BR3PR Arachis hypogaea HOM05D004112 ORTHO05D004739 1.2e-33 148.7 304 36.5
VMungo1383G0113 Vigna mungo HOM05D004112 ORTHO05D004739 2.8e-33 147.5 315 37.5
Thhalv10007108m.g Eutrema salsugineum HOM05D004112 ORTHO05D004739 4.7e-33 146.7 289 37.7
ECA233G4780 Erigeron canadensis HOM05D000002 ORTHO05D000001 6.1e-33 146.4 317 35.0
THA.LOC104805277 Tarenaya hassleriana HOM05D004112 ORTHO05D004739 6.1e-33 146.4 628 28.2
CANSAT01G3092 Cannabis sativa HOM05D004112 ORTHO05D004739 8.0e-33 146.0 314 36.0
Medtr3g086550 Medicago truncatula HOM05D004112 ORTHO05D004739 8.0e-33 146.0 385 35.3
Sp1g11580 Schrenkiella parvula HOM05D004112 ORTHO05D004739 8.0e-33 146.0 289 39.8
EL10Ac6g13879 Beta vulgaris HOM05D004112 ORTHO05D004739 1.4e-32 145.2 682 26.4
DCAR_007043 Daucus carota HOM05D004112 ORTHO05D004739 1.4e-32 145.2 633 30.3
Ah.02g130260 Amaranthus hybridus HOM05D004112 ORTHO05D004739 3.1e-32 144.1 306 37.3
Hund06041 Selenicereus undatus HOM05D004112 ORTHO05D004739 3.4e-31 140.6 268 37.3
Glyma.11G243800 Glycine max HOM05D004112 ORTHO05D004739 9.8e-31 139.0 231 40.3
TPR.G30525 Trifolium pratense HOM05D004112 ORTHO05D004739 1.3e-30 138.7 284 36.3
Carub.0001s1278 Capsella rubella HOM05D004112 ORTHO05D004739 1.7e-30 138.3 621 27.7
Lj6g0012261 Lotus japonicus HOM05D004112 ORTHO05D004739 6.4e-30 136.3 643 28.3
A06p08680 Brassica napus HOM05D000421 ORTHO05D004739 1.1e-29 135.6 286 35.7
BolC5t29775H Brassica oleracea HOM05D000421 ORTHO05D004739 1.1e-29 135.6 293 34.8
BraA06t24065Z Brassica rapa HOM05D000421 ORTHO05D004739 1.1e-29 135.6 286 35.7
Hund25400 Selenicereus undatus HOM05D004112 ORTHO05D004739 1.4e-29 135.2 639 28.0
AL1G24680 Arabidopsis lyrata HOM05D004112 ORTHO05D004739 3.2e-29 134.0 619 28.3
Lsat_1_v5_gn_3_30221 Lactuca sativa HOM05D004112 ORTHO05D004739 4.6e-28 130.2 334 31.4
BraA09t41696Z Brassica rapa HOM05D004112 ORTHO05D004739 1.0e-27 129.0 290 35.9
Lsat_1_v5_gn_8_152820 Lactuca sativa HOM05D004112 ORTHO05D004739 1.0e-27 129.0 385 31.4
PSO478G3171 Papaver somniferum HOM05D004112 ORTHO05D004739 1.7e-27 128.3 613 27.7
CARHR013360 Cardamine hirsuta HOM05D004112 ORTHO05D004739 1.1e-26 125.6 287 33.4
Phvul.001G255700 Phaseolus vulgaris HOM05D004112 ORTHO05D004739 1.5e-26 125.2 339 32.4
Aa31LG1G1770 Aethionema arabicum HOM05D004112 ORTHO05D004739 1.9e-26 124.8 282 34.4
BcaC05g25092 Brassica carinata HOM05D004112 ORTHO05D004739 1.9e-26 124.8 638 26.2
BolC8t52227H Brassica oleracea HOM05D004112 ORTHO05D004739 7.3e-26 122.9 296 34.5
C05p10290 Brassica napus HOM05D000421 ORTHO05D004739 1.1e-24 119.0 286 32.9
C05p09990 Brassica napus HOM05D004112 ORTHO05D004739 2.3e-24 117.9 290 35.2
A09p63460 Brassica napus HOM05D004112 ORTHO05D004739 3.1e-24 117.5 314 33.8
DCAR_026503 Daucus carota HOM05D004112 ORTHO05D004739 5.2e-24 116.7 235 41.7
Lalb_Chr08g0230891 Lupinus albus HOM05D004112 ORTHO05D004739 5.2e-24 116.7 306 35.0
Lsat_1_v5_gn_8_152740 Lactuca sativa HOM05D000214 ORTHO05D000131 6.8e-24 116.3 153 42.5
AT1G13030 Arabidopsis thaliana HOM05D004112 ORTHO05D004739 8.9e-24 115.9 616 27.4
Rhsim12G0108400 Rhododendron simsii HOM05D004112 ORTHO05D004739 3.4e-23 114.0 573 26.5
HanXRQChr17g0539921 Helianthus annuus HOM05D004112 ORTHO05D004739 5.8e-23 113.2 338 32.5
HanXRQChr12g0371721 Helianthus annuus HOM05D004112 ORTHO05D004739 7.5e-23 112.8 276 34.1
Psat5g091840 Pisum sativum HOM05D004112 ORTHO05D004739 9.8e-23 112.5 285 35.1
ATR0122G036 Amborella trichopoda HOM05D004112 ORTHO05D004739 2.4e-21 107.8 318 32.4
MELO3C010699.2 Cucumis melo HOM05D004112 ORTHO05D004739 4.1e-21 107.1 181 40.9
BcaB08g34232 Brassica carinata HOM05D004112 ORTHO05D004739 5.4e-21 106.7 301 32.2
ClCG08G017620 Citrullus lanatus HOM05D004112 ORTHO05D004739 7.1e-21 106.3 298 32.6
Zm00001eb421500 Zea mays HOM05D004112 ORTHO05D004739 1.0e-19 102.4 88 53.4
Hma1.2p1_0900F.1_g234620 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 2.3e-19 101.3 114 54.4
BcaC05g25410 Brassica carinata HOM05D004112 ORTHO05D004739 3.0e-19 100.9 280 31.1
C08p46920 Brassica napus HOM05D004112 ORTHO05D004739 8.6e-19 99.4 309 29.4
Zm00001eb084730 Zea mays HOM05D004112 ORTHO05D004739 5.6e-18 96.7 299 31.1
CsaV3_2G025020 Cucumis sativus L. HOM05D004112 ORTHO05D004739 1.6e-17 95.1 279 33.0
Actinidia01360 Actinidia chinensis HOM05D004112 ORTHO05D004739 2.1e-17 94.7 630 25.4
HPP92_024299 Vanilla planifolia HOM05D004112 ORTHO05D004739 3.6e-17 94.0 89 50.6
CDE09G0121 Ceratophyllum demersum HOM05D004112 ORTHO05D004739 6.2e-17 93.2 249 32.5
Lj2C1008T10 Lonicera japonica HOM05D004112 ORTHO05D004739 2.3e-16 91.3 359 28.4
Lalb_Chr23g0277631 Lupinus albus HOM05D004112 ORTHO05D004739 4.0e-16 90.5 365 29.3
Os12g0288801 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 8.9e-16 89.4 85 50.6
C05p12860 Brassica napus HOM05D000639 ORTHO05D032511 1.2e-15 89.0 194 34.5
Lj3P1060T39 Lonicera japonica HOM05D004112 ORTHO05D004739 2.6e-15 87.8 176 36.9
Pp3c16_2520 Physcomitrium patens HOM05D004112 ORTHO05D004739 5.8e-15 86.7 293 28.7
Cfa009235 Carpinus fangiana HOM05D004112 ORTHO05D004739 7.6e-15 86.3 548 25.0
Sed0015104 Sechium edule HOM05D004112 ORTHO05D004739 4.9e-14 83.6 251 30.7
BcaC05g25061 Brassica carinata HOM05D004112 ORTHO05D027101 8.3e-14 82.8 239 34.7
HPP92_015941 Vanilla planifolia HOM05D004112 ORTHO05D004739 2.4e-13 81.3 182 33.0
BolC5t29747H Brassica oleracea HOM05D004112 ORTHO05D027101 9.2e-13 79.3 232 34.1
HPP92_015914 Vanilla planifolia HOM05D004112 ORTHO05D004739 9.2e-13 79.3 88 47.7
Pp3c4_25420 Physcomitrium patens HOM05D004112 ORTHO05D004739 1.6e-12 78.6 120 40.8
Mapoly0010s0205 Marchantia polymorpha HOM05D004112 ORTHO05D004739 2.7e-12 77.8 220 30.9
CAN.G272.6 Capsicum annuum HOM05D004112 ORTHO05D004739 4.6e-12 77.0 143 38.5
PGR042G2157 Punica granatum HOM05D004112 ORTHO05D004739 1.0e-11 75.9 62 58.1
Lsat_1_v5_gn_3_132580 Lactuca sativa HOM05D000186 ORTHO05D004739 1.3e-11 75.5 195 36.9
BcaC05g25060 Brassica carinata HOM05D021208 ORTHO05D027101 3.9e-11 73.9 90 47.8
BolC5t29741H Brassica oleracea HOM05D004112 ORTHO05D004739 3.9e-11 73.9 226 32.7
Hma1.2p1_0900F.1_g234630 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 3.9e-11 73.9 66 60.6
Pp3c26_4720 Physcomitrium patens HOM05D027689 ORTHO05D018028 6.6e-11 73.2 83 44.6
HPP92_011276 Vanilla planifolia HOM05D004112 ORTHO05D004739 8.6e-11 72.8 196 30.6
HPP92_011297 Vanilla planifolia HOM05D004112 ORTHO05D004739 1.5e-10 72.0 233 29.6
AagrBONN_evm.TU.Sc2ySwM_368.3384 Anthoceros agrestis HOM05D004112 ORTHO05D004739 1.2e-09 68.9 135 31.9
Hma1.2p1_0079F.1_g041130 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 8.9e-08 62.8 126 33.3
Lj4A466T15 Lonicera japonica HOM05D004112 ORTHO05D004739 2.6e-07 61.2 100 42.0
Ca_25135_v3 Cicer arietinum L. HOM05D004112 ORTHO05D004739 1.3e-06 58.9 641 23.7


User provided reference genes

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