Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g066940.4 Solanum lycopersicum HOM05D006007 ORTHO05D007518 0.0e+00 1176.8 645 100.0
PGSC0003DMG400025145 Solanum tuberosum HOM05D006007 ORTHO05D007518 1.7e-301 1038.9 594 96.0
Sopen02g016130 Solanum pennellii HOM05D006007 ORTHO05D007518 1.6e-283 979.2 522 98.7
CAN.G398.20 Capsicum annuum HOM05D006007 ORTHO05D007518 1.2e-262 909.8 595 84.9
Nitab4.5_0000212g0230 Nicotiana tabacum HOM05D006007 ORTHO05D007518 2.9e-261 905.2 594 83.8
Nitab4.5_0010627g0030 Nicotiana tabacum HOM05D006007 ORTHO05D007518 4.9e-221 771.5 598 75.3
Peaxi162Scf00991g00329 Petunia axillaris HOM05D006007 ORTHO05D007518 3.3e-201 705.7 467 81.4
MSTRG.23885 Avicennia marina HOM05D006007 ORTHO05D007518 2.9e-160 569.7 589 58.6
Cc07_g04190 Coffea canephora HOM05D006007 ORTHO05D007518 4.9e-160 568.9 612 57.4
CSS0026219 Camellia sinensis var. sinensis HOM05D006007 ORTHO05D007518 1.1e-159 567.8 608 58.9
CSS0007202 Camellia sinensis var. sinensis HOM05D006007 ORTHO05D007518 5.4e-159 565.5 608 58.7
Dinv34943 Davidia involucrata HOM05D006007 ORTHO05D007518 3.4e-153 546.2 482 64.5
Oeu004412.3 Olea europaea HOM05D006007 ORTHO05D007518 3.4e-153 546.2 681 53.2
TAR264G0002 Trochodendron aralioides HOM05D006007 ORTHO05D007518 1.4e-151 540.8 621 54.3
GSVIVG01032902001 Vitis vinifera HOM05D006007 ORTHO05D007518 7.0e-151 538.5 628 55.4
QL02p067640 Quercus lobata HOM05D006007 ORTHO05D007518 8.3e-144 515.0 645 53.2
RcHm_v2.0_Chr2g0165881 Rosa chinensis HOM05D006007 ORTHO05D007518 3.2e-143 513.1 633 54.3
Manes.02G054700 Manihot esculenta HOM05D006007 ORTHO05D007518 9.2e-143 511.5 648 53.5
Migut.H00628 Erythranthe guttata HOM05D006007 ORTHO05D007518 2.5e-140 503.4 477 62.1
Nn4g23426 Nelumbo nucifera HOM05D006007 ORTHO05D007518 4.3e-140 502.7 622 52.6
Gorai.007G082800 Gossypium raimondii HOM05D006007 ORTHO05D007518 5.6e-140 502.3 649 53.6
CiPaw.03G088800 Carya illinoinensis HOM05D006007 ORTHO05D007518 1.4e-138 497.7 625 53.0
FAN09G0451 Fragaria x ananassa HOM05D006007 ORTHO05D007518 1.8e-138 497.3 629 51.8
Gohir.A11G072800 Gossypium hirsutum HOM05D006007 ORTHO05D007518 2.6e-137 493.4 648 52.3
Atru.chr8.458 Acer truncatum HOM05D006007 ORTHO05D007518 3.4e-137 493.0 627 54.1
Ciclev10011374m.g Citrus clementina HOM05D006007 ORTHO05D007518 3.4e-137 493.0 586 55.6
SalBow1G7079 Salvia bowleyana HOM05D006007 ORTHO05D007518 5.8e-137 492.3 475 60.2
Cfa007665 Carpinus fangiana HOM05D006007 ORTHO05D007518 7.6e-137 491.9 631 52.1
FvH4_6g46910 Fragaria vesca HOM05D006007 ORTHO05D007518 9.9e-137 491.5 629 52.9
Glyma.18G266400 Glycine max HOM05D006007 ORTHO05D007518 3.8e-136 489.6 678 51.2
FAN05G3222 Fragaria x ananassa HOM05D006007 ORTHO05D007518 1.4e-135 487.6 643 50.5
Duzib264G0491 Durio zibethinus HOM05D006007 ORTHO05D007518 2.1e-134 483.8 628 53.8
Gohir.D11G077100 Gossypium hirsutum HOM05D006007 ORTHO05D007518 2.1e-134 483.8 649 52.5
FAN02G0083 Fragaria x ananassa HOM05D006007 ORTHO05D007518 2.7e-134 483.4 643 51.9
Potri.017G093600 Populus trichocarpa HOM05D006007 ORTHO05D007518 3.0e-133 479.9 620 51.1
Sabra17G0082500 Salix brachista HOM05D006007 ORTHO05D007518 3.9e-133 479.6 617 51.5
Thecc.04G095300 Theobroma cacao HOM05D006007 ORTHO05D007518 5.1e-133 479.2 619 53.0
HanXRQChr17g0546081 Helianthus annuus HOM05D006007 ORTHO05D007518 1.2e-131 474.6 612 53.9
TWI32G0586 Tripterygium wilfordii HOM05D006007 ORTHO05D007518 1.6e-131 474.2 612 53.1
vmacro05632 Vaccinium macrocarpon HOM05D006007 ORTHO05D007518 3.6e-131 473.0 596 53.5
PSO017G6380 Papaver somniferum HOM05D006007 ORTHO05D007518 1.8e-130 470.7 610 50.7
Ca_04352_v3 Cicer arietinum L. HOM05D006007 ORTHO05D007518 5.2e-130 469.2 690 49.6
Medtr7g013700 Medicago truncatula HOM05D006007 ORTHO05D007518 5.2e-130 469.2 641 51.5
CANSAT64G1701 Cannabis sativa HOM05D006007 ORTHO05D007518 6.9e-130 468.8 645 49.6
CiPaw.04G055900 Carya illinoinensis HOM05D006007 ORTHO05D007518 3.4e-129 466.5 468 59.4
FAN14G4567 Fragaria x ananassa HOM05D006007 ORTHO05D007518 2.9e-128 463.4 660 50.0
DCAR_005549 Daucus carota HOM05D006007 ORTHO05D007518 8.4e-128 461.8 592 52.2
Rhsim10G0048800 Rhododendron simsii HOM05D006007 ORTHO05D007518 8.4e-128 461.8 600 50.3
PSO478G1877 Papaver somniferum HOM05D006007 ORTHO05D007518 1.9e-127 460.7 608 50.8
Lj4A118G52 Lonicera japonica HOM05D006007 ORTHO05D007518 4.2e-127 459.5 589 49.7
Phvul.008G033600 Phaseolus vulgaris HOM05D006007 ORTHO05D007518 7.1e-127 458.8 627 48.6
Aqoxy3G03693 Aquilegia oxysepala HOM05D006007 ORTHO05D007518 7.8e-126 455.3 620 51.3
Prupe.3G255200 Prunus persica HOM05D006007 ORTHO05D007518 7.8e-126 455.3 496 58.1
Haze_14433 Corylus avellana HOM05D006007 ORTHO05D007518 1.0e-125 454.9 503 56.7
Lalb_Chr17g0337001 Lupinus albus HOM05D006007 ORTHO05D007518 1.7e-125 454.1 656 49.7
ECA246G0757 Erigeron canadensis HOM05D006007 ORTHO05D007518 1.5e-124 451.1 602 52.0
Glyma.08G245100 Glycine max HOM05D006007 ORTHO05D007518 4.3e-124 449.5 534 53.0
FAN05G2596 Fragaria x ananassa HOM05D006007 ORTHO05D007518 6.2e-123 445.7 495 57.0
Lsat_1_v5_gn_3_97780 Lactuca sativa HOM05D006007 ORTHO05D007518 1.8e-122 444.1 605 48.4
Hund15552 Selenicereus undatus HOM05D006007 ORTHO05D007518 2.4e-122 443.7 673 47.7
unitig_52.g17640 Utricularia gibba HOM05D006007 ORTHO05D007518 3.1e-122 443.4 573 52.9
Ca_30479_v3 Cicer arietinum L. HOM05D006007 ORTHO05D007518 2.0e-121 440.7 531 53.1
EL10Ac2g03139 Beta vulgaris HOM05D006007 ORTHO05D007518 4.9e-120 436.0 596 51.0
COL.COLO4_07027 Corchorus olitorius HOM05D006007 ORTHO05D007518 7.9e-118 428.7 490 56.3
arahy.Tifrunner.gnm1.ann1.J3LTHX Arachis hypogaea HOM05D006007 ORTHO05D007518 3.0e-117 426.8 757 43.7
arahy.Tifrunner.gnm1.ann1.EQE0CJ Arachis hypogaea HOM05D006007 ORTHO05D007518 8.7e-117 425.2 757 43.6
Lj1g0023913 Lotus japonicus HOM05D006007 ORTHO05D007518 1.1e-116 424.9 674 47.3
AUR62018183 Chenopodium quinoa HOM05D006007 ORTHO05D007518 1.9e-116 424.1 441 59.0
THA.LOC104823889 Tarenaya hassleriana HOM05D006007 ORTHO05D007518 2.5e-116 423.7 640 49.2
ATR0177G014 Amborella trichopoda HOM05D006007 ORTHO05D007518 6.2e-115 419.1 637 44.9
Ah.10g032260 Amaranthus hybridus HOM05D006007 ORTHO05D007518 1.4e-114 417.9 488 53.7
Sed0005820 Sechium edule HOM05D006007 ORTHO05D007518 1.8e-114 417.5 645 45.6
PGR004G1158 Punica granatum HOM05D006007 ORTHO05D007518 3.1e-114 416.8 542 51.1
Sp2g17990 Schrenkiella parvula HOM05D006007 ORTHO05D007518 4.5e-113 412.9 569 51.5
Thhalv10003901m.g Eutrema salsugineum HOM05D006007 ORTHO05D007518 7.6e-113 412.1 566 49.1
CDE02G4269 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 1.3e-112 411.4 600 44.8
Cpa.g.sc14.172 Carica papaya HOM05D006007 ORTHO05D007518 8.4e-112 408.7 391 61.9
AL5G19590 Arabidopsis lyrata HOM05D006007 ORTHO05D007518 1.8e-109 401.0 602 49.3
MELO3C022635.2 Cucumis melo HOM05D006007 ORTHO05D007518 3.0e-109 400.2 672 42.7
AT3G29390 Arabidopsis thaliana HOM05D006007 ORTHO05D007518 5.1e-109 399.4 477 53.9
Aa31LG2G3900 Aethionema arabicum HOM05D006007 ORTHO05D007518 6.7e-109 399.1 584 49.8
HPP92_007829 Vanilla planifolia HOM05D006007 ORTHO05D007518 1.5e-108 397.9 536 48.7
BcaB07g30079 Brassica carinata HOM05D006007 ORTHO05D007518 1.9e-108 397.5 578 49.8
Carub.0005s0814 Capsella rubella HOM05D006007 ORTHO05D007518 1.3e-107 394.8 604 48.7
BraA02t08659Z Brassica rapa HOM05D006007 ORTHO05D007518 4.8e-107 392.9 579 48.4
CsaV3_4G009190 Cucumis sativus L. HOM05D006007 ORTHO05D007518 1.1e-106 391.7 525 49.3
A02p36640 Brassica napus HOM05D006007 ORTHO05D007518 3.1e-106 390.2 579 48.2
BcaC03g17580 Brassica carinata HOM05D006007 ORTHO05D007518 9.0e-106 388.7 562 48.8
C02p55600 Brassica napus HOM05D006007 ORTHO05D007518 5.8e-105 386.0 562 48.6
BolC2t11616H Brassica oleracea HOM05D006007 ORTHO05D007518 5.8e-105 386.0 562 48.6
ClCG07G016350 Citrullus lanatus HOM05D006007 ORTHO05D007518 4.9e-104 382.9 525 48.8
Zm00001eb008620 Zea mays HOM05D006007 ORTHO05D007518 2.1e-102 377.5 534 48.1
AUR62038668 Chenopodium quinoa HOM05D006007 ORTHO05D007518 1.6e-94 351.3 346 60.4
Psat3g201920 Pisum sativum HOM05D006007 ORTHO05D007518 2.0e-89 334.3 399 53.6
SEGI_40404 Sequoiadendron giganteum HOM05D006007 ORTHO05D007518 1.7e-83 314.7 620 38.2
MBI19_g00631_MAGBIO Magnolia biondii HOM05D006007 ORTHO05D007518 6.5e-80 302.8 284 57.7
TPR.G33475 Trifolium pratense HOM05D006007 ORTHO05D007518 8.5e-80 302.4 255 65.1
HPP92_007749 Vanilla planifolia HOM05D006007 ORTHO05D007518 8.8e-77 292.4 296 55.4
Mapoly0218s0012 Marchantia polymorpha HOM05D006007 ORTHO05D007518 9.7e-76 288.9 617 37.1
Eucgr.J01380 Eucalyptus grandis HOM05D006007 ORTHO05D007518 1.3e-75 288.5 426 51.6
Hma1.2p1_0481F.1_g162150 Hydrangea macrophylla HOM05D006007 ORTHO05D007518 4.8e-75 286.6 401 49.4
Hma1.2p1_0481F.1_g162140 Hydrangea macrophylla HOM05D006007 ORTHO05D007518 6.3e-75 286.2 400 49.5
MD09G1066300 Malus domestica HOM05D006007 ORTHO05D007518 9.7e-68 262.3 243 62.1
Pp3c3_22820 Physcomitrium patens HOM05D006007 ORTHO05D007518 1.7e-67 261.5 426 42.0
Sc10g0004660 Simmondsia chinensis HOM05D006007 ORTHO05D007518 3.2e-63 247.3 247 59.5
CBR_g19543 Chara braunii HOM05D006007 ORTHO05D007518 2.3e-56 224.6 344 43.0
MD09G1066400 Malus domestica HOM05D006007 ORTHO05D007518 2.3e-56 224.6 375 51.2
Hma1.2p1_0481F.1_g162130 Hydrangea macrophylla HOM05D006007 ORTHO05D007518 1.3e-51 208.8 178 64.6
Sc10g0004670 Simmondsia chinensis HOM05D006007 ORTHO05D007518 3.6e-46 190.7 369 42.0
CDE05G1269 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 6.1e-46 189.9 230 48.7
MBI19_g00630_MAGBIO Magnolia biondii HOM05D006007 ORTHO05D007518 1.5e-39 168.7 370 40.3
Os03g0213900 Oryza sativa ssp. japonica HOM05D006007 ORTHO05D007518 5.6e-39 166.8 176 54.0
Oeu051018.1 Olea europaea HOM05D006007 ORTHO05D007518 1.6e-38 165.2 236 48.7
SEGI_00365 Sequoiadendron giganteum HOM05D006007 ORTHO05D007518 3.2e-34 151.0 130 60.8
SHI25685 Sapria himalayana HOM05D006007 ORTHO05D007518 7.0e-34 149.8 139 56.8
BraA09t36042Z Brassica rapa HOM05D006007 ORTHO05D007518 3.1e-29 134.4 96 71.9
A09p04060 Brassica napus HOM05D006007 ORTHO05D010543 5.8e-28 130.2 96 70.8
Peaxi162Scf00991g00335 Petunia axillaris HOM05D006007 ORTHO05D007518 9.2e-26 122.9 119 72.3
SHI25684 Sapria himalayana HOM05D006007 ORTHO05D007518 2.1e-25 121.7 184 44.0
CDE05G3437 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 3.6e-22 110.9 233 36.5
Cre09.g389900 Chlamydomonas reinhardtii HOM05D006007 ORTHO05D007518 3.4e-20 104.4 372 28.0
BcaC03g17562 Brassica carinata HOM05D006007 ORTHO05D007518 1.4e-18 99.0 257 35.0
BolC2t11584H Brassica oleracea HOM05D006007 ORTHO05D007518 1.2e-14 85.9 70 62.9
MBI15_g14467_MAGBIO Magnolia biondii HOM05D003623 ORTHO05D007518 6.9e-13 80.1 157 43.3
CARHR153030 Cardamine hirsuta HOM05D006007 ORTHO05D007518 2.0e-12 78.6 65 60.0
HPP92_007750 Vanilla planifolia HOM05D006007 ORTHO05D007518 1.4e-10 72.4 115 45.2
Cpa.g.sc14.174 Carica papaya HOM05D006007 ORTHO05D007518 5.1e-08 63.9 109 38.5
Oeu051017.1 Olea europaea HOM05D020362 ORTHO05D030297 6.2e-06 57.0 146 44.5
SEGI_04639 Sequoiadendron giganteum HOM05D003145 ORTHO05D003586 8.1e-06 56.6 187 24.6


User provided reference genes

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