Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g065690.3 Solanum lycopersicum HOM05D006288 ORTHO05D007416 1.2e-56 223.0 115 100.0
Sopen02g015910 Solanum pennellii HOM05D006288 ORTHO05D007416 1.2e-56 223.0 115 100.0
PGSC0003DMG400026550 Solanum tuberosum HOM05D006288 ORTHO05D007416 1.1e-54 216.5 115 97.4
Peaxi162Scf00019g00316 Petunia axillaris HOM05D006288 ORTHO05D007416 5.3e-49 197.6 113 92.0
Nitab4.5_0003203g0060 Nicotiana tabacum HOM05D006288 ORTHO05D007416 1.7e-47 192.6 112 91.1
vmacro18118 Vaccinium macrocarpon HOM05D006288 ORTHO05D007416 9.3e-46 186.8 112 84.8
Rhsim10G0068900 Rhododendron simsii HOM05D006288 ORTHO05D007416 3.5e-45 184.9 112 83.0
GSVIVG01036516001 Vitis vinifera HOM05D006288 ORTHO05D007416 4.6e-45 184.5 112 83.0
Cc07_g04640 Coffea canephora HOM05D006288 ORTHO05D007416 1.3e-44 183.0 114 81.6
Migut.K00879 Erythranthe guttata HOM05D006288 ORTHO05D007416 2.3e-44 182.2 112 83.9
CSS0015874 Camellia sinensis var. sinensis HOM05D006288 ORTHO05D007416 3.0e-44 181.8 112 81.2
CSS0028097 Camellia sinensis var. sinensis HOM05D006288 ORTHO05D007416 3.0e-44 181.8 112 81.2
Dinv34894 Davidia involucrata HOM05D006288 ORTHO05D007416 3.0e-44 181.8 112 83.0
Oeu007090.1 Olea europaea HOM05D006288 ORTHO05D007416 3.0e-44 181.8 112 82.1
Rhsim08G0078400 Rhododendron simsii HOM05D006288 ORTHO05D007416 3.0e-44 181.8 112 82.1
Gohir.A12G056700 Gossypium hirsutum HOM05D006288 ORTHO05D007416 6.6e-44 180.6 113 81.4
Duzib133G0644 Durio zibethinus HOM05D006288 ORTHO05D007416 1.1e-43 179.9 113 80.5
Duzib133G1254 Durio zibethinus HOM05D006288 ORTHO05D007416 1.1e-43 179.9 113 80.5
Gohir.D12G056100 Gossypium hirsutum HOM05D006288 ORTHO05D007416 1.1e-43 179.9 113 81.4
Gorai.008G059200 Gossypium raimondii HOM05D006288 ORTHO05D007416 1.1e-43 179.9 113 81.4
Hma1.2p1_0304F.1_g119265 Hydrangea macrophylla HOM05D006288 ORTHO05D007416 1.1e-43 179.9 113 80.5
Hma1.2p1_0304F.1_g119270 Hydrangea macrophylla HOM05D006288 ORTHO05D007416 1.1e-43 179.9 113 80.5
TAR629G2245 Trochodendron aralioides HOM05D006288 ORTHO05D007416 1.1e-43 179.9 114 81.6
Thecc.10G108100 Theobroma cacao HOM05D005170 ORTHO05D007416 1.5e-43 179.5 112 82.1
SGA_v2.0_scaffold30G12393 Striga asiatica HOM05D006288 ORTHO05D007416 9.6e-43 176.8 112 79.5
Manes.01G106000 Manihot esculenta HOM05D006288 ORTHO05D007416 1.6e-42 176.0 111 79.3
PSO832G2920 Papaver somniferum HOM05D006288 ORTHO05D007416 1.8e-41 172.6 112 78.6
CSS0029131 Camellia sinensis var. sinensis HOM05D006288 ORTHO05D007416 2.4e-41 172.2 112 77.7
PSO210G6985 Papaver somniferum HOM05D006288 ORTHO05D007416 2.4e-41 172.2 112 77.7
Lalb_Chr21g0318141 Lupinus albus HOM05D006288 ORTHO05D007416 4.0e-41 171.4 116 73.3
Psat5g210920 Pisum sativum HOM05D006288 ORTHO05D007416 5.3e-41 171.0 113 76.1
Cfa007713 Carpinus fangiana HOM05D006288 ORTHO05D007416 6.9e-41 170.6 111 78.4
Prupe.3G247000 Prunus persica HOM05D006288 ORTHO05D007416 9.0e-41 170.2 113 76.1
Hund16253 Selenicereus undatus HOM05D006288 ORTHO05D007416 9.0e-41 170.2 112 75.9
SalBow7G0779 Salvia bowleyana HOM05D006288 ORTHO05D007416 1.2e-40 169.9 112 78.6
Psat5g210840 Pisum sativum HOM05D006288 ORTHO05D007416 1.5e-40 169.5 113 75.2
Phvul.004G044700 Phaseolus vulgaris HOM05D006288 ORTHO05D007416 2.0e-40 169.1 108 77.8
TPR.G14566 Trifolium pratense HOM05D006288 ORTHO05D007416 2.0e-40 169.1 113 75.2
Ca_13697_v3 Cicer arietinum L. HOM05D006288 ORTHO05D007416 2.6e-40 168.7 108 78.7
Lj3g0015520 Lotus japonicus HOM05D006288 ORTHO05D007416 2.6e-40 168.7 109 77.1
CSS0016762 Camellia sinensis var. sinensis HOM05D006288 ORTHO05D007416 3.4e-40 168.3 114 77.2
CSS0047986 Camellia sinensis var. sinensis HOM05D006288 ORTHO05D007416 3.4e-40 168.3 114 77.2
Glyma.13G051400 Glycine max HOM05D006288 ORTHO05D007416 3.4e-40 168.3 109 77.1
Glyma.19G037000 Glycine max HOM05D006288 ORTHO05D007416 3.4e-40 168.3 109 78.0
Medtr3g034300 Medicago truncatula HOM05D006288 ORTHO05D007416 4.5e-40 167.9 113 74.3
TWI60G1717 Tripterygium wilfordii HOM05D006288 ORTHO05D007416 4.5e-40 167.9 112 75.9
CiPaw.03G081300 Carya illinoinensis HOM05D006288 ORTHO05D007416 5.8e-40 167.5 111 79.3
Ah.16g100880 Amaranthus hybridus HOM05D006288 ORTHO05D007416 9.9e-40 166.8 112 75.0
PGR004G0851 Punica granatum HOM05D006288 ORTHO05D007416 9.9e-40 166.8 113 75.2
VMungo0464G1523 Vigna mungo HOM05D006288 ORTHO05D007416 1.3e-39 166.4 108 76.9
PSO675G0562 Papaver somniferum HOM05D006288 ORTHO05D007416 1.7e-39 166.0 112 76.8
Sc11g0008960 Simmondsia chinensis HOM05D006288 ORTHO05D007416 1.7e-39 166.0 114 74.6
arahy.Tifrunner.gnm1.ann1.J0I6JM Arachis hypogaea HOM05D006288 ORTHO05D007416 2.9e-39 165.2 116 71.6
RcHm_v2.0_Chr2g0164421 Rosa chinensis HOM05D006288 ORTHO05D007416 2.9e-39 165.2 110 73.6
ATR0691G027 Amborella trichopoda HOM05D006288 ORTHO05D007416 3.8e-39 164.9 113 72.6
Cpa.g.sc14.255 Carica papaya HOM05D006288 ORTHO05D007416 4.9e-39 164.5 114 74.6
Manes.02G062500 Manihot esculenta HOM05D006288 ORTHO05D007416 8.4e-39 163.7 109 77.1
CAN.G93.47 Capsicum annuum HOM05D006288 ORTHO05D007416 2.4e-38 162.2 114 76.3
MD09G1077100 Malus domestica HOM05D006288 ORTHO05D007416 3.2e-38 161.8 113 70.8
PSO541G1058 Papaver somniferum HOM05D006288 ORTHO05D007416 4.2e-38 161.4 112 74.1
Psat5g212400 Pisum sativum HOM05D006288 ORTHO05D007416 5.5e-38 161.0 109 73.4
Atru.chr8.595 Acer truncatum HOM05D006288 ORTHO05D007416 7.1e-38 160.6 111 71.2
Lsat_1_v5_gn_4_174040 Lactuca sativa HOM05D006288 ORTHO05D007416 2.1e-37 159.1 111 73.0
QL09p029462 Quercus lobata HOM05D006288 ORTHO05D007416 2.1e-37 159.1 110 73.6
MD17G1067500 Malus domestica HOM05D006288 ORTHO05D007416 1.0e-36 156.8 111 68.5
Eucgr.F02878 Eucalyptus grandis HOM05D006288 ORTHO05D007416 1.3e-36 156.4 113 71.7
Os02g0190900 Oryza sativa ssp. japonica HOM05D006288 ORTHO05D007416 5.1e-36 154.5 112 70.5
THA.LOC104805112 Tarenaya hassleriana HOM05D006288 ORTHO05D007416 5.6e-35 151.0 109 68.8
HPP92_018391 Vanilla planifolia HOM05D006288 ORTHO05D007416 7.4e-35 150.6 110 69.1
CANSAT64G2264 Cannabis sativa HOM05D005170 ORTHO05D007416 1.6e-34 149.4 108 69.4
CsaV3_4G009920 Cucumis sativus L. HOM05D006288 ORTHO05D007416 6.2e-34 147.5 111 68.5
SEGI_23755 Sequoiadendron giganteum HOM05D006288 ORTHO05D007416 1.4e-33 146.4 104 68.3
unitig_32.g10759 Utricularia gibba HOM05D006288 ORTHO05D007416 1.4e-33 146.4 113 64.6
Zm00001eb234970 Zea mays HOM05D006288 ORTHO05D007416 1.4e-33 146.4 109 66.1
Actinidia17612 Actinidia chinensis HOM05D006288 ORTHO05D007416 1.8e-33 146.0 101 76.2
FAN10G3625 Fragaria x ananassa HOM05D006288 ORTHO05D007416 1.8e-33 146.0 99 73.7
EL10Ac2g04409 Beta vulgaris HOM05D006288 ORTHO05D007416 3.1e-33 145.2 112 67.0
Nitab4.5_0002249g0090 Nicotiana tabacum HOM05D006288 ORTHO05D007416 1.5e-32 142.9 76 96.1
AUR62023135 Chenopodium quinoa HOM05D006288 ORTHO05D007416 2.0e-32 142.5 112 63.4
Nn4g23570 Nelumbo nucifera HOM05D006288 ORTHO05D007416 4.9e-31 137.9 113 65.5
FAN10G2886 Fragaria x ananassa HOM05D006288 ORTHO05D007416 6.5e-31 137.5 99 69.7
C07p39960 Brassica napus HOM05D006288 ORTHO05D007416 8.4e-31 137.1 104 64.4
BolC7t44529H Brassica oleracea HOM05D006288 ORTHO05D007416 8.4e-31 137.1 104 63.5
Sabra17G0089200 Salix brachista HOM05D006288 ORTHO05D007416 8.4e-31 137.1 95 72.6
BraA06t26742Z Brassica rapa HOM05D006288 ORTHO05D007416 1.9e-30 136.0 104 63.5
Atru.BG.156.p Acer truncatum HOM05D006288 ORTHO05D007416 9.3e-30 133.7 94 68.1
Actinidia26277 Actinidia chinensis HOM05D006288 ORTHO05D007416 2.1e-29 132.5 112 60.7
FAN14G1171 Fragaria x ananassa HOM05D006288 ORTHO05D007416 2.7e-29 132.1 111 63.1
COL.COLO4_00228 Corchorus olitorius HOM05D006288 ORTHO05D007416 1.9e-27 125.9 77 83.1
DCAR_011002 Daucus carota HOM05D006288 ORTHO05D007416 2.5e-27 125.6 78 80.8
Hma1.2p1_2186F.1_g316383 Hydrangea macrophylla HOM05D006288 ORTHO05D007416 3.3e-27 125.2 76 81.6
Hma1.2p1_3488F.1_g336360 Hydrangea macrophylla HOM05D006288 ORTHO05D007416 3.3e-27 125.2 76 81.6
Lsat_1_v5_gn_4_173980 Lactuca sativa HOM05D006288 ORTHO05D007416 4.3e-27 124.8 111 58.6
CDE10G0042 Ceratophyllum demersum HOM05D006288 ORTHO05D007416 1.3e-26 123.2 89 67.4
Potri.017G106200 Populus trichocarpa HOM05D006288 ORTHO05D007416 1.4e-25 119.8 116 56.0
Carub.0008s0943 Capsella rubella HOM05D006288 ORTHO05D007416 3.1e-25 118.6 110 55.5
ECA232G4388 Erigeron canadensis HOM05D006288 ORTHO05D007416 2.0e-24 115.9 111 55.0
TAR371G0310 Trochodendron aralioides HOM05D006288 ORTHO05D007416 2.9e-23 112.1 85 64.7
Aa31LG7G12050 Aethionema arabicum HOM05D006288 ORTHO05D007416 8.4e-23 110.5 108 53.7
MELO3C018910.2 Cucumis melo HOM05D006288 ORTHO05D007416 4.2e-22 108.2 111 52.3
FAN02G0987 Fragaria x ananassa HOM05D006288 ORTHO05D007416 1.2e-21 106.7 111 54.1
FAN09G1057 Fragaria x ananassa HOM05D010582 ORTHO05D007416 1.2e-21 106.7 111 54.1
ClCG07G016140 Citrullus lanatus HOM05D006288 ORTHO05D007416 1.6e-21 106.3 111 52.3
FAN05G5526 Fragaria x ananassa HOM05D006288 ORTHO05D007416 2.7e-21 105.5 111 54.1
Sed0021882 Sechium edule HOM05D006288 ORTHO05D007416 6.1e-21 104.4 81 64.2
HanXRQChr15g0464891 Helianthus annuus HOM05D006288 ORTHO05D007416 1.0e-20 103.6 93 57.0
Mapoly0015s0174 Marchantia polymorpha HOM05D006288 ORTHO05D007416 1.3e-20 103.2 105 46.7
FvH4_6g46100 Fragaria vesca HOM05D006288 ORTHO05D007416 5.7e-19 97.8 66 74.2
Eucgr.K01979 Eucalyptus grandis HOM05D006288 ORTHO05D007416 2.2e-18 95.9 91 62.6
CARHR287980 Cardamine hirsuta HOM05D006288 ORTHO05D007416 3.7e-18 95.1 108 47.2
Thhalv10005135m.g Eutrema salsugineum HOM05D006288 ORTHO05D007416 4.8e-18 94.7 74 62.2
AagrBONN_evm.TU.Sc2ySwM_344.2644 Anthoceros agrestis HOM05D006288 ORTHO05D007416 6.3e-18 94.4 106 43.4
AL8G23340 Arabidopsis lyrata HOM05D006288 ORTHO05D007416 6.3e-18 94.4 110 45.5
FvH4_6g24710 Fragaria vesca HOM05D006288 ORTHO05D007416 6.3e-18 94.4 59 78.0
FAN14G4004 Fragaria x ananassa HOM05D006288 ORTHO05D007416 6.3e-18 94.4 59 78.0
Sp2g19860 Schrenkiella parvula HOM05D006288 ORTHO05D007416 1.4e-17 93.2 107 46.7
AL954U10010 Arabidopsis lyrata HOM05D006288 ORTHO05D007416 1.8e-17 92.8 108 46.3
A09p04890 Brassica napus HOM05D006288 ORTHO05D007416 1.8e-17 92.8 73 63.0
BraA09t36127Z Brassica rapa HOM05D006288 ORTHO05D007416 1.8e-17 92.8 73 63.0
AT5G49550 Arabidopsis thaliana HOM05D006288 ORTHO05D007416 2.4e-17 92.4 110 45.5
BcaC04g23731 Brassica carinata HOM05D006288 ORTHO05D007416 3.1e-17 92.0 71 63.4
C09p05280 Brassica napus HOM05D006288 ORTHO05D007416 3.1e-17 92.0 71 63.4
BcaB04g19620 Brassica carinata HOM05D006288 ORTHO05D007416 9.0e-17 90.5 73 60.3
Pp3c21_3840 Physcomitrium patens HOM05D006288 ORTHO05D007416 1.3e-15 86.7 105 44.8
SHI46878 Sapria himalayana HOM05D006288 ORTHO05D007416 1.4e-14 83.2 73 47.9
SMO358G0122 Selaginella moellendorffii HOM05D006288 ORTHO05D007416 2.7e-13 79.0 97 40.2
Psat6g174640 Pisum sativum HOM05D006288 ORTHO05D007416 8.8e-12 73.9 62 59.7
FAN03G1360 Fragaria x ananassa HOM05D006288 ORTHO05D007416 3.1e-09 65.5 53 58.5
Haze_03283 Corylus avellana HOM05D002280 ORTHO05D002322 5.3e-09 64.7 43 74.4
FAN06G1951 Fragaria x ananassa HOM05D006288 ORTHO05D007416 7.2e-06 54.3 99 37.4


User provided reference genes

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