Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g065510.1 Solanum lycopersicum HOM05D006999 ORTHO05D008936 0.0e+00 1170.2 654 100.0
Sopen02g015710 Solanum pennellii HOM05D006999 ORTHO05D008936 0.0e+00 1147.5 654 97.4
PGSC0003DMG400001186 Solanum tuberosum HOM05D006999 ORTHO05D008936 0.0e+00 1125.2 654 95.6
Nitab4.5_0000090g0200 Nicotiana tabacum HOM05D006999 ORTHO05D008936 1.2e-275 953.0 656 83.5
Nitab4.5_0004292g0030 Nicotiana tabacum HOM05D006999 ORTHO05D008936 1.6e-272 942.6 656 83.1
CAN.G93.18 Capsicum annuum HOM05D006999 ORTHO05D008936 4.8e-272 941.0 654 82.4
Peaxi162Scf00019g00154 Petunia axillaris HOM05D006999 ORTHO05D008936 2.5e-244 849.0 658 70.8
Cc05_g07730 Coffea canephora HOM05D006999 ORTHO05D008936 1.5e-217 760.0 652 60.4
MSTRG.15411 Avicennia marina HOM05D006999 ORTHO05D008936 2.6e-217 759.2 650 61.7
Oeu049309.1 Olea europaea HOM05D006999 ORTHO05D008936 3.6e-211 738.8 653 59.4
Oeu049321.1 Olea europaea HOM05D006999 ORTHO05D008936 4.7e-211 738.4 653 59.6
Migut.K00852 Erythranthe guttata HOM05D006999 ORTHO05D008936 1.1e-204 717.2 650 57.7
Dinv29387 Davidia involucrata HOM05D006999 ORTHO05D008936 2.1e-203 713.0 626 60.1
Dinv39939 Davidia involucrata HOM05D006999 ORTHO05D008936 2.1e-203 713.0 651 58.5
CSS0009159 Camellia sinensis var. sinensis HOM05D006999 ORTHO05D008936 1.3e-200 703.7 653 57.4
SalBow1G0035 Salvia bowleyana HOM05D006999 ORTHO05D008936 4.9e-200 701.8 621 59.3
CSS0003698 Camellia sinensis var. sinensis HOM05D006999 ORTHO05D008936 6.4e-200 701.4 653 57.3
DCAR_026261 Daucus carota HOM05D006999 ORTHO05D008936 4.7e-195 685.3 627 59.2
SGA_v2.0_scaffold62G21537 Striga asiatica HOM05D006999 ORTHO05D008936 4.0e-194 682.2 657 55.6
Oeu049317.1 Olea europaea HOM05D006999 ORTHO05D008936 3.8e-184 649.0 549 62.1
QL06p044626 Quercus lobata HOM05D006999 ORTHO05D008936 1.1e-183 647.5 624 56.2
Prupe.7G147200 Prunus persica HOM05D006999 ORTHO05D008936 2.7e-182 642.9 621 61.4
Cpa.g.sc15.132 Carica papaya HOM05D006999 ORTHO05D008936 1.9e-180 636.7 657 53.0
RcHm_v2.0_Chr2g0102951 Rosa chinensis HOM05D006999 ORTHO05D008936 2.1e-179 633.3 630 54.6
Sc03g0001020 Simmondsia chinensis HOM05D006999 ORTHO05D008936 2.2e-176 623.2 631 59.9
ECA232G3871 Erigeron canadensis HOM05D006999 ORTHO05D008936 4.9e-176 622.1 631 58.6
GSVIVG01019040001 Vitis vinifera HOM05D006999 ORTHO05D008936 7.1e-175 618.2 649 51.8
CANSAT01G1763 Cannabis sativa HOM05D006999 ORTHO05D008936 2.7e-174 616.3 646 51.2
vmacro00136 Vaccinium macrocarpon HOM05D006999 ORTHO05D008936 1.0e-173 614.4 653 59.4
CiPaw.01G031400 Carya illinoinensis HOM05D006999 ORTHO05D008936 1.1e-172 610.9 635 53.1
Thecc.01G043300 Theobroma cacao HOM05D006999 ORTHO05D008936 2.5e-172 609.8 651 51.3
MD15G1270900 Malus domestica HOM05D006999 ORTHO05D008936 5.6e-172 608.6 606 54.3
FAN23G0790 Fragaria x ananassa HOM05D006999 ORTHO05D008936 2.1e-171 606.7 647 58.6
Aqoxy6G01000 Aquilegia oxysepala HOM05D006999 ORTHO05D008936 6.2e-171 605.1 630 52.5
Phvul.002G025400 Phaseolus vulgaris HOM05D006999 ORTHO05D008936 3.1e-170 602.8 627 58.9
Rhsim02G0229300 Rhododendron simsii HOM05D006999 ORTHO05D008936 4.0e-170 602.4 657 57.2
Manes.13G134700 Manihot esculenta HOM05D006999 ORTHO05D008936 9.0e-170 601.3 651 51.6
arahy.Tifrunner.gnm1.ann1.ZB5P2M Arachis hypogaea HOM05D006999 ORTHO05D008936 2.9e-168 596.3 623 54.1
Duzib147G0594 Durio zibethinus HOM05D006999 ORTHO05D008936 8.4e-168 594.7 647 50.2
Gohir.D12G067100 Gossypium hirsutum HOM05D006999 ORTHO05D008936 2.4e-167 593.2 647 49.5
Gorai.008G070500 Gossypium raimondii HOM05D006999 ORTHO05D008936 5.4e-167 592.0 647 49.5
Lj2g0003627 Lotus japonicus HOM05D006999 ORTHO05D008936 5.4e-167 592.0 654 49.7
VMungo1215G1670 Vigna mungo HOM05D006999 ORTHO05D008936 4.6e-166 589.0 625 58.2
PSO541G6186 Papaver somniferum HOM05D006999 ORTHO05D008936 3.9e-165 585.9 636 50.0
Cfa004253 Carpinus fangiana HOM05D006999 ORTHO05D008936 8.7e-165 584.7 613 53.0
Gohir.A12G066700 Gossypium hirsutum HOM05D006999 ORTHO05D008936 1.1e-164 584.3 647 49.8
Sabra05G0104700 Salix brachista HOM05D006999 ORTHO05D008936 7.4e-164 581.6 641 49.5
Lj4P134T41 Lonicera japonica HOM05D006999 ORTHO05D008936 2.8e-163 579.7 512 59.0
FvH4_2g07140 Fragaria vesca HOM05D006999 ORTHO05D008936 6.2e-163 578.6 633 50.2
TAR381G1039 Trochodendron aralioides HOM05D006999 ORTHO05D008936 2.4e-162 576.6 624 57.2
Rhsim02G0225000 Rhododendron simsii HOM05D006999 ORTHO05D008936 4.0e-162 575.9 556 55.4
Potri.005G128600 Populus trichocarpa HOM05D006999 ORTHO05D008936 5.3e-162 575.5 644 50.2
AUR62008030 Chenopodium quinoa HOM05D006999 ORTHO05D008936 1.3e-160 570.9 652 54.9
TWI73G1021 Tripterygium wilfordii HOM05D006999 ORTHO05D008936 1.0e-157 561.2 638 53.8
Nn5g29479 Nelumbo nucifera HOM05D006999 ORTHO05D008936 3.0e-157 559.7 623 49.6
Aa31LG1G15180 Aethionema arabicum HOM05D006999 ORTHO05D008936 1.5e-156 557.4 642 48.0
Ca_24822_v3 Cicer arietinum L. HOM05D006999 ORTHO05D008936 1.5e-156 557.4 666 47.3
THA.LOC104826827 Tarenaya hassleriana HOM05D006999 ORTHO05D008936 1.4e-154 550.8 657 47.6
AT5G66631 Arabidopsis thaliana HOM05D006999 ORTHO05D008936 5.3e-154 548.9 654 48.5
CARHR281110 Cardamine hirsuta HOM05D006999 ORTHO05D008936 7.6e-153 545.0 662 47.4
Ah.02g126330 Amaranthus hybridus HOM05D006999 ORTHO05D008936 1.3e-152 544.3 639 53.4
Thhalv10005592m.g Eutrema salsugineum HOM05D006999 ORTHO05D008936 3.8e-152 542.7 664 47.6
BcaC06g34726 Brassica carinata HOM05D006999 ORTHO05D008936 3.2e-151 539.7 664 47.6
AL8G44870 Arabidopsis lyrata HOM05D006999 ORTHO05D008936 1.6e-150 537.3 666 47.0
Actinidia36538 Actinidia chinensis HOM05D006999 ORTHO05D008936 2.1e-150 537.0 662 47.9
BraA07t29457Z Brassica rapa HOM05D006999 ORTHO05D008936 3.5e-150 536.2 649 47.6
BcaB02g10006 Brassica carinata HOM05D006999 ORTHO05D008936 1.0e-149 534.6 653 47.9
Sp2g30070 Schrenkiella parvula HOM05D006999 ORTHO05D008936 3.9e-149 532.7 650 46.8
Lalb_Chr09g0322731 Lupinus albus HOM05D006999 ORTHO05D008936 3.3e-148 529.6 622 51.1
HanXRQChr09g0265111 Helianthus annuus HOM05D006999 ORTHO05D008936 1.6e-147 527.3 642 46.1
A07p17310 Brassica napus HOM05D006999 ORTHO05D008936 2.2e-147 526.9 650 47.2
BolC7t43049H Brassica oleracea HOM05D006999 ORTHO05D008936 8.2e-147 525.0 633 47.9
Glyma.11G063000 Glycine max HOM05D006999 ORTHO05D008936 2.0e-145 520.4 623 54.1
Medtr5g019030 Medicago truncatula HOM05D006999 ORTHO05D008936 1.0e-144 518.1 656 51.8
EL10Ac6g14872 Beta vulgaris HOM05D006999 ORTHO05D008936 3.3e-140 503.1 648 49.8
FvH4_1g14280 Fragaria vesca HOM05D006999 ORTHO05D008936 2.2e-139 500.4 513 51.7
TPR.G34465 Trifolium pratense HOM05D006999 ORTHO05D008936 8.2e-139 498.4 623 46.7
Eucgr.I02485 Eucalyptus grandis HOM05D006999 ORTHO05D008936 4.5e-137 492.7 627 44.5
Atru.chr3.494 Acer truncatum HOM05D006999 ORTHO05D008936 2.9e-136 490.0 502 52.2
Carub.0008s2788 Capsella rubella HOM05D006999 ORTHO05D008936 3.6e-134 483.0 517 50.9
MBI16_g10978_MAGBIO Magnolia biondii HOM05D006999 ORTHO05D003554 1.0e-133 481.5 623 50.7
Hma1.2p1_2980F.1_g331210 Hydrangea macrophylla HOM05D006999 ORTHO05D008936 8.2e-131 471.9 539 49.2
Psat2g162640 Pisum sativum HOM05D006999 ORTHO05D008936 1.8e-130 470.7 627 49.6
C07p25190 Brassica napus HOM05D006999 ORTHO05D008936 5.3e-130 469.2 543 48.3
Haze_15147 Corylus avellana HOM05D000909 ORTHO05D000928 1.0e-128 464.9 626 45.0
HPP92_025826 Vanilla planifolia HOM05D006999 ORTHO05D008936 7.2e-127 458.8 635 41.7
Ciclev10027580m.g Citrus clementina HOM05D006999 ORTHO05D008936 2.7e-126 456.8 636 49.5
RcHm_v2.0_Chr2g0102871 Rosa chinensis HOM05D006999 ORTHO05D008936 3.0e-125 453.4 491 51.7
CDE01G0819 Ceratophyllum demersum HOM05D006999 ORTHO05D008936 1.2e-121 441.4 639 41.6
unitig_748.g8403 Utricularia gibba HOM05D006999 ORTHO05D008936 6.5e-112 409.1 372 55.9
ATR0782G111 Amborella trichopoda HOM05D006999 ORTHO05D008936 5.2e-109 399.4 684 37.6
Os01g0167750 Oryza sativa ssp. japonica HOM05D006999 ORTHO05D008936 3.6e-102 376.7 632 37.5
Dinv18613 Davidia involucrata HOM05D006999 ORTHO05D008936 4.9e-99 366.3 628 38.7
Dinv26229 Davidia involucrata HOM05D006999 ORTHO05D008936 4.9e-99 366.3 628 38.7
SEGI_35610 Sequoiadendron giganteum HOM05D006999 ORTHO05D008936 4.0e-93 346.7 662 34.1
Zm00001eb123240 Zea mays HOM05D006999 ORTHO05D008936 5.4e-90 336.3 619 36.3
Haze_25752 Corylus avellana HOM05D006999 ORTHO05D008936 1.6e-89 334.7 676 34.3
Cfa021547 Carpinus fangiana HOM05D006999 ORTHO05D008936 6.0e-81 306.2 654 35.2
Cfa003411 Carpinus fangiana HOM05D006999 ORTHO05D008936 7.8e-57 226.1 642 29.6
Glyma.01G179251 Glycine max HOM05D006999 ORTHO05D008936 1.2e-52 212.2 240 47.1
unitig_748.g8404 Utricularia gibba HOM05D006999 ORTHO05D008936 1.3e-51 208.8 236 50.4
FAN28G3023 Fragaria x ananassa HOM05D006999 ORTHO05D008936 6.2e-46 189.9 178 52.2
Glyma.01G179201 Glycine max HOM05D006999 ORTHO05D008936 8.1e-46 189.5 227 68.3
COL.COLO4_22153 Corchorus olitorius HOM05D000225 ORTHO05D003554 2.1e-33 148.3 229 38.9
Actinidia12102 Actinidia chinensis HOM05D006999 ORTHO05D008936 6.1e-25 120.2 154 46.8
MD02G1156600 Malus domestica HOM05D006999 ORTHO05D008936 6.5e-19 100.1 143 45.5
HanXRQChr09g0268161 Helianthus annuus HOM05D006999 ORTHO05D008936 1.1e-18 99.4 151 39.7
Aa31LG1G15170 Aethionema arabicum HOM05D000909 ORTHO05D008936 1.2e-17 95.9 133 42.9
Pp3c4_14140 Physcomitrium patens HOM05D006999 ORTHO05D008936 6.3e-14 83.6 175 28.0
Mapoly0001s0055 Marchantia polymorpha HOM05D004079 ORTHO05D005437 6.5e-11 73.6 171 27.5
ATR0003G004 Amborella trichopoda HOM05D002986 ORTHO05D003966 8.0e-09 66.6 153 32.0
AagrBONN_evm.TU.Sc2ySwM_344.143 Anthoceros agrestis HOM05D004079 ORTHO05D008936 8.0e-09 66.6 120 30.8
FvH4_1g14250 Fragaria vesca HOM05D000909 ORTHO05D000928 3.9e-08 64.3 162 30.2
EL10Ac6g14214 Beta vulgaris HOM05D006999 ORTHO05D008936 5.2e-08 63.9 138 29.7
Mapoly0026s0011 Marchantia polymorpha HOM05D006999 ORTHO05D008936 8.8e-08 63.2 96 33.3
Pp3c5_2770 Physcomitrium patens HOM05D061868 ORTHO05D007285 1.1e-07 62.8 148 23.6
SalBow1G1508 Salvia bowleyana HOM05D006596 ORTHO05D008497 1.5e-07 62.4 356 23.6
Prupe.2G122500 Prunus persica HOM05D000104 ORTHO05D009920 2.0e-07 62.0 205 24.9
MELO3C009563.2 Cucumis melo HOM05D006596 ORTHO05D008497 2.6e-07 61.6 404 20.8
Peaxi162Scf00675g00062 Petunia axillaris HOM05D006596 ORTHO05D008497 2.6e-07 61.6 361 22.2
Hma1.2p1_0180F.1_g079710 Hydrangea macrophylla HOM05D002986 ORTHO05D003966 3.3e-07 61.2 176 26.7
Pp3c1_6490 Physcomitrium patens HOM05D006749 ORTHO05D008352 3.3e-07 61.2 140 28.6
Psat2g188440 Pisum sativum HOM05D000424 ORTHO05D000355 3.3e-07 61.2 106 34.0
FAN18G2707 Fragaria x ananassa HOM05D002453 ORTHO05D002107 4.4e-07 60.8 235 21.7
HPP92_000532 Vanilla planifolia HOM05D007352 ORTHO05D009389 4.4e-07 60.8 148 27.0
Atru.chr9.2259 Acer truncatum HOM05D002453 ORTHO05D002107 5.7e-07 60.5 207 24.2
DCAR_021786 Daucus carota HOM05D000424 ORTHO05D002854 5.7e-07 60.5 253 22.5
MD01G1088700 Malus domestica HOM05D002391 ORTHO05D003966 5.7e-07 60.5 164 27.4
Nitab4.5_0005983g0010 Nicotiana tabacum HOM05D002453 ORTHO05D002107 5.7e-07 60.5 206 23.8
Cfa016202 Carpinus fangiana HOM05D000001 ORTHO05D010669 7.4e-07 60.1 115 27.8
MBI04_g06993_MAGBIO Magnolia biondii HOM05D007352 ORTHO05D009389 9.7e-07 59.7 100 33.0
FvH4_5g15040 Fragaria vesca HOM05D002453 ORTHO05D002107 1.3e-06 59.3 235 21.3
FAN08G1232 Fragaria x ananassa HOM05D002453 ORTHO05D002107 1.3e-06 59.3 235 21.7
Nitab4.5_0000026g0050 Nicotiana tabacum HOM05D002453 ORTHO05D002107 1.3e-06 59.3 206 23.3
Sed0007804 Sechium edule HOM05D006596 ORTHO05D008497 1.3e-06 59.3 406 20.7
SEGI_12141 Sequoiadendron giganteum HOM05D000424 ORTHO05D000355 1.3e-06 59.3 152 25.0
BraA10t45038Z Brassica rapa HOM05D006596 ORTHO05D008497 2.2e-06 58.5 175 25.7
CAN.G911.26 Capsicum annuum HOM05D006596 ORTHO05D008497 2.2e-06 58.5 156 29.5
Prupe.5G192300 Prunus persica HOM05D002453 ORTHO05D002107 2.2e-06 58.5 183 23.0
SEGI_18978 Sequoiadendron giganteum HOM05D007352 ORTHO05D009389 2.8e-06 58.2 116 28.4
TWI79G0176 Tripterygium wilfordii HOM05D000424 ORTHO05D000355 2.8e-06 58.2 103 31.1
TWI79G1119 Tripterygium wilfordii HOM05D005362 ORTHO05D000355 2.8e-06 58.2 107 29.9
Haze_00254 Corylus avellana HOM05D000001 ORTHO05D010669 3.7e-06 57.8 115 28.7
Gohir.D02G188900 Gossypium hirsutum HOM05D007202 ORTHO05D009125 3.7e-06 57.8 176 27.3
Cc09_g04270 Coffea canephora HOM05D006232 ORTHO05D007746 4.8e-06 57.4 161 29.8
MSTRG.12369 Avicennia marina HOM05D002391 ORTHO05D003966 6.3e-06 57.0 155 27.7
Gohir.A12G248000 Gossypium hirsutum HOM05D000001 ORTHO05D010669 6.3e-06 57.0 90 30.0
Potri.013G105000 Populus trichocarpa HOM05D007352 ORTHO05D009389 6.3e-06 57.0 126 31.7
BcaB03g14475 Brassica carinata HOM05D004079 ORTHO05D005437 8.2e-06 56.6 136 28.7
BolC3t13510H Brassica oleracea HOM05D007661 ORTHO05D009671 8.2e-06 56.6 157 25.5
Gorai.008G266900 Gossypium raimondii HOM05D000001 ORTHO05D010669 8.2e-06 56.6 90 30.0


User provided reference genes

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