Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g065340.3 Solanum lycopersicum HOM05D009106 ORTHO05D010235 7.2e-161 570.5 279 100.0
PGSC0003DMG400043353 Solanum tuberosum HOM05D009106 ORTHO05D010235 8.1e-112 407.5 255 81.2
Nitab4.5_0000806g0040 Nicotiana tabacum HOM05D009106 ORTHO05D010235 8.1e-96 354.4 282 65.2
Sopen02g015520 Solanum pennellii HOM05D009106 ORTHO05D010235 8.1e-96 354.4 187 96.3
Nitab4.5_0005238g0010 Nicotiana tabacum HOM05D009106 ORTHO05D010235 1.2e-94 350.5 287 64.5
Peaxi162Scf00234g00222 Petunia axillaris HOM05D009106 ORTHO05D010235 1.9e-89 333.2 280 62.9
Peaxi162Scf01198g00214 Petunia axillaris HOM05D009106 ORTHO05D010235 2.9e-77 292.7 280 55.0
Sopen02g015510 Solanum pennellii HOM05D009106 ORTHO05D010235 2.3e-66 256.5 140 92.9
Peaxi162Scf00234g00218 Petunia axillaris HOM05D009106 ORTHO05D010235 8.8e-66 254.6 281 49.8
CAN.G1308.2 Capsicum annuum HOM05D009106 ORTHO05D010235 1.3e-61 240.7 155 77.4
Solyc02g081780.3 Solanum lycopersicum HOM05D009106 ORTHO05D010235 3.7e-56 222.6 295 44.7
Peaxi162Scf00234g00219 Petunia axillaris HOM05D009106 ORTHO05D010235 2.7e-54 216.5 243 52.7
PGSC0003DMG400045041 Solanum tuberosum HOM05D009106 ORTHO05D010235 5.4e-47 192.2 281 44.1
Sopen02g026380 Solanum pennellii HOM05D009106 ORTHO05D010235 4.5e-46 189.1 272 41.5
CAN.G1308.1 Capsicum annuum HOM05D005506 ORTHO05D004172 7.0e-39 165.2 170 52.4
Nitab4.5_0005238g0020 Nicotiana tabacum HOM05D009106 ORTHO05D010235 9.2e-39 164.9 140 62.1
CAN.G1630.1 Capsicum annuum HOM05D009106 ORTHO05D010235 1.8e-34 150.6 163 52.1
Peaxi162Scf01198g00315 Petunia axillaris HOM05D009106 ORTHO05D010235 2.2e-32 143.7 97 70.1
Solyc05g017740.1 Solanum lycopersicum HOM05D009106 ORTHO05D010235 4.9e-32 142.5 141 49.6
CAN.G533.1 Capsicum annuum HOM05D009106 ORTHO05D010235 9.2e-31 138.3 121 58.7
CAN.G11.29 Capsicum annuum HOM05D009106 ORTHO05D010235 2.5e-28 130.2 94 66.0
Solyc00g500092.1 Solanum lycopersicum HOM05D000395 ORTHO05D010235 1.4e-26 124.4 278 32.4
Solyc00g500219.1 Solanum lycopersicum HOM05D000395 ORTHO05D010235 1.4e-26 124.4 278 32.4
Solyc03g036477.2 Solanum lycopersicum HOM05D000395 ORTHO05D010235 1.4e-26 124.4 278 32.4
Peaxi162Scf01198g00310 Petunia axillaris HOM05D009106 ORTHO05D010235 2.6e-25 120.2 153 46.4
Sopen02g015460 Solanum pennellii HOM05D009106 ORTHO05D010235 2.2e-24 117.1 150 46.7
Dinv26758 Davidia involucrata HOM05D000823 ORTHO05D000088 1.9e-23 114.0 280 30.4
PGSC0003DMG400013106 Solanum tuberosum HOM05D009106 ORTHO05D010235 1.9e-23 114.0 116 54.3
PGSC0003DMG400002785 Solanum tuberosum HOM05D000395 ORTHO05D010235 7.0e-23 112.1 315 28.6
PGSC0003DMG400013104 Solanum tuberosum HOM05D009106 ORTHO05D010235 2.7e-22 110.2 135 49.6
Solyc03g043580.3 Solanum lycopersicum HOM05D000395 ORTHO05D010235 7.8e-22 108.6 309 27.2
Nitab4.5_0000806g0020 Nicotiana tabacum HOM05D009106 ORTHO05D010235 3.9e-21 106.3 102 61.8
PGSC0003DMG400040663 Solanum tuberosum HOM05D000395 ORTHO05D010235 8.6e-21 105.1 157 41.4
Cc00_g11360 Coffea canephora HOM05D037937 ORTHO05D010235 1.1e-20 104.8 294 27.9
Solyc01g015210.1 Solanum lycopersicum HOM05D009106 ORTHO05D010235 1.1e-20 104.8 281 29.5
Sopen11g021070 Solanum pennellii HOM05D000004 ORTHO05D000002 1.1e-20 104.8 136 41.2
Solyc00g011660.1 Solanum lycopersicum HOM05D009106 ORTHO05D010235 2.5e-20 103.6 274 29.2
Solyc00g500222.1 Solanum lycopersicum HOM05D009106 ORTHO05D010235 7.3e-20 102.1 130 46.2
Sopen00g003940 Solanum pennellii HOM05D000047 ORTHO05D000044 4.7e-19 99.4 272 26.8
Peaxi162Scf01198g00213 Petunia axillaris HOM05D000727 ORTHO05D000541 1.4e-18 97.8 77 63.6
Gohir.D03G019700 Gossypium hirsutum HOM05D000823 ORTHO05D010235 1.8e-18 97.4 272 28.3
Gorai.003G020400 Gossypium raimondii HOM05D000823 ORTHO05D010235 1.8e-18 97.4 272 28.3
Manes.13G130800 Manihot esculenta HOM05D000823 ORTHO05D000088 5.2e-18 95.9 279 27.6
Gohir.A02G160800 Gossypium hirsutum HOM05D000823 ORTHO05D010235 6.8e-18 95.5 272 28.3
Gohir.A02G160700 Gossypium hirsutum HOM05D000823 ORTHO05D000088 9.9e-17 91.7 253 27.7
Gorai.003G020700 Gossypium raimondii HOM05D000823 ORTHO05D000088 3.7e-16 89.7 253 26.5
Thecc.01G047300 Theobroma cacao HOM05D000823 ORTHO05D000088 8.3e-16 88.6 264 26.5
Sopen05g014190 Solanum pennellii HOM05D009106 ORTHO05D010235 1.1e-15 88.2 58 65.5
TAR376G0714 Trochodendron aralioides HOM05D000823 ORTHO05D000088 4.1e-15 86.3 280 26.1
Lsat_1_v5_gn_4_9181 Lactuca sativa HOM05D009784 ORTHO05D010235 5.4e-15 85.9 273 25.3
MD03G1230100 Malus domestica HOM05D000823 ORTHO05D000088 1.2e-14 84.7 288 24.7
Gohir.D03G019725 Gossypium hirsutum HOM05D000823 ORTHO05D010235 2.1e-14 84.0 270 26.3
CSS0024635 Camellia sinensis var. sinensis HOM05D009784 ORTHO05D010235 3.5e-14 83.2 235 29.8
Cc07_g05490 Coffea canephora HOM05D000823 ORTHO05D000088 4.6e-14 82.8 257 28.4
Gorai.003G020600 Gossypium raimondii HOM05D000823 ORTHO05D010235 4.6e-14 82.8 252 27.0
Nn5g28071 Nelumbo nucifera HOM05D000823 ORTHO05D000088 1.3e-13 81.3 257 26.8
Nn6g32142 Nelumbo nucifera HOM05D000823 ORTHO05D000088 6.6e-13 79.0 255 24.7
Nitab4.5_0000806g0060 Nicotiana tabacum HOM05D000727 ORTHO05D010235 6.6e-13 79.0 51 66.7
HanXRQChr12g0380731 Helianthus annuus HOM05D009784 ORTHO05D010235 4.3e-12 76.3 276 25.7
Solyc11g045450.3 Solanum lycopersicum HOM05D000395 ORTHO05D010235 4.3e-12 76.3 88 43.2
Cc00_g18110 Coffea canephora HOM05D037937 ORTHO05D010235 7.3e-12 75.5 94 41.5
Prupe.4G178200 Prunus persica HOM05D000823 ORTHO05D000088 9.5e-12 75.1 278 24.8
QL02p006491 Quercus lobata HOM05D000823 ORTHO05D000088 9.5e-12 75.1 284 25.4
HanXRQChr08g0216601 Helianthus annuus HOM05D009784 ORTHO05D010235 3.6e-11 73.2 274 25.9
Prupe.4G178100 Prunus persica HOM05D000823 ORTHO05D000088 4.7e-11 72.8 286 24.1
Lsat_1_v5_gn_4_8941 Lactuca sativa HOM05D009784 ORTHO05D000088 1.8e-10 70.9 277 22.7
ECA246G4930 Erigeron canadensis HOM05D009106 ORTHO05D010235 3.1e-10 70.1 225 24.9
RcHm_v2.0_Chr7g0224941 Rosa chinensis HOM05D000823 ORTHO05D000088 3.1e-10 70.1 253 22.5
DCAR_010938 Daucus carota HOM05D000395 ORTHO05D000088 1.5e-09 67.8 271 26.2
RcHm_v2.0_Chr6g0296251 Rosa chinensis HOM05D000823 ORTHO05D000088 2.6e-09 67.0 263 24.7
SEGI_32289 Sequoiadendron giganteum HOM05D000823 ORTHO05D000088 2.6e-09 67.0 275 24.4
CAN.G1066.2 Capsicum annuum HOM05D009106 ORTHO05D010235 3.4e-09 66.6 79 45.6
HanXRQChr05g0151691 Helianthus annuus HOM05D009784 ORTHO05D010235 3.4e-09 66.6 212 26.4
HanXRQChr07g0191931 Helianthus annuus HOM05D009784 ORTHO05D010235 3.4e-09 66.6 270 23.7
PSO675G8304 Papaver somniferum HOM05D000395 ORTHO05D000088 3.4e-09 66.6 235 26.0
ECA234G0573 Erigeron canadensis HOM05D009784 ORTHO05D010235 5.8e-09 65.9 236 24.6
PGR102G0754 Punica granatum HOM05D000823 ORTHO05D000088 7.6e-09 65.5 263 25.9
Sopen02g015470 Solanum pennellii HOM05D023357 ORTHO05D022985 7.6e-09 65.5 48 62.5
PGR102G3079 Punica granatum HOM05D000823 ORTHO05D000088 1.3e-08 64.7 270 24.1
HanXRQChr17g0570521 Helianthus annuus HOM05D009784 ORTHO05D010235 1.7e-08 64.3 282 23.8
Migut.B01169 Erythranthe guttata HOM05D000823 ORTHO05D000088 2.2e-08 63.9 238 23.5
GSVIVG01031850001 Vitis vinifera HOM05D000823 ORTHO05D009132 2.2e-08 63.9 245 24.9
MD04G1034500 Malus domestica HOM05D000823 ORTHO05D000088 2.9e-08 63.5 261 24.5
Prupe.1G388000 Prunus persica HOM05D000823 ORTHO05D000088 2.9e-08 63.5 262 24.4
Prupe.4G178300 Prunus persica HOM05D000823 ORTHO05D000088 2.9e-08 63.5 275 25.5
SalBow1G4579 Salvia bowleyana HOM05D005797 ORTHO05D000088 2.9e-08 63.5 269 24.5
AT4G31690 Arabidopsis thaliana HOM05D000888 ORTHO05D000740 3.8e-08 63.2 248 26.6
Lsat_1_v5_gn_3_51441 Lactuca sativa HOM05D009784 ORTHO05D010235 3.8e-08 63.2 269 23.4
DCAR_003839 Daucus carota HOM05D000823 ORTHO05D000088 4.9e-08 62.8 286 21.7
SalBow1G5187 Salvia bowleyana HOM05D005797 ORTHO05D000088 4.9e-08 62.8 272 21.0
BcaB06g27992 Brassica carinata HOM05D000430 ORTHO05D000305 6.4e-08 62.4 255 25.9
FvH4_7g12210 Fragaria vesca HOM05D000888 ORTHO05D000740 6.4e-08 62.4 229 24.0
PGR083G0539 Punica granatum HOM05D000823 ORTHO05D000088 6.4e-08 62.4 272 23.2
FAN10G0782 Fragaria x ananassa HOM05D000888 ORTHO05D000740 8.4e-08 62.0 229 24.0
FAN10G2447 Fragaria x ananassa HOM05D000888 ORTHO05D000740 8.4e-08 62.0 229 24.0
Nn5g29401 Nelumbo nucifera HOM05D000823 ORTHO05D000088 8.4e-08 62.0 336 22.0
AT2G24700 Arabidopsis thaliana HOM05D000888 ORTHO05D000740 1.1e-07 61.6 226 27.0
VMungo1127G1459 Vigna mungo HOM05D000823 ORTHO05D000088 1.1e-07 61.6 284 23.2
Carub.0007s0890 Capsella rubella HOM05D000888 ORTHO05D000740 1.9e-07 60.8 258 26.0
Thhalv10000130m.g Eutrema salsugineum HOM05D000888 ORTHO05D000740 1.9e-07 60.8 302 25.8
PGR044G2084 Punica granatum HOM05D000823 ORTHO05D000088 2.4e-07 60.5 279 21.9
RcHm_v2.0_Chr5g0033031 Rosa chinensis HOM05D000823 ORTHO05D000088 2.4e-07 60.5 223 26.0
RcHm_v2.0_Chr5g0033041 Rosa chinensis HOM05D000823 ORTHO05D000088 3.2e-07 60.1 253 22.1
SalBow7G1253 Salvia bowleyana HOM05D000888 ORTHO05D000740 3.2e-07 60.1 252 22.6
Prupe.1G517200 Prunus persica HOM05D000888 ORTHO05D000740 4.1e-07 59.7 258 24.0
CsaV3_6G042840 Cucumis sativus L. HOM05D000395 ORTHO05D000088 7.1e-07 58.9 333 23.1
Migut.D01642 Erythranthe guttata HOM05D000888 ORTHO05D000740 7.1e-07 58.9 236 23.3
Lsat_1_v5_gn_4_9001 Lactuca sativa HOM05D009784 ORTHO05D000088 7.1e-07 58.9 258 23.3
MD04G1034600 Malus domestica HOM05D000823 ORTHO05D000088 7.1e-07 58.9 262 24.0
Nn1g09566 Nelumbo nucifera HOM05D000888 ORTHO05D000740 9.2e-07 58.5 257 23.7
A04p19010 Brassica napus HOM05D000888 ORTHO05D000740 1.2e-06 58.2 220 26.4
FAN01G3034 Fragaria x ananassa HOM05D000888 ORTHO05D000740 1.2e-06 58.2 227 22.5
SalBow1G1964 Salvia bowleyana HOM05D010976 ORTHO05D000088 1.2e-06 58.2 254 21.7
Aa31LG2G18670 Aethionema arabicum HOM05D000888 ORTHO05D000740 2.1e-06 57.4 238 23.1
FAN27G3396 Fragaria x ananassa HOM05D000823 ORTHO05D000088 2.1e-06 57.4 104 28.8
Solyc00g500220.1 Solanum lycopersicum HOM05D009106 ORTHO05D010235 2.1e-06 57.4 54 46.3
Aa31sc15G170 Aethionema arabicum HOM05D000888 ORTHO05D000740 2.7e-06 57.0 265 23.0
BolC4t26980H Brassica oleracea HOM05D000888 ORTHO05D000740 2.7e-06 57.0 254 25.6
FvH4_5g30470 Fragaria vesca HOM05D000823 ORTHO05D000088 2.7e-06 57.0 295 24.4
Oeu064572.1 Olea europaea HOM05D000888 ORTHO05D000740 2.7e-06 57.0 212 24.1
Dinv36014 Davidia involucrata HOM05D000888 ORTHO05D000740 3.5e-06 56.6 262 24.4
PSO357G0640 Papaver somniferum HOM05D000823 ORTHO05D000088 3.5e-06 56.6 263 24.7
RcHm_v2.0_Chr4g0439191 Rosa chinensis HOM05D011407 ORTHO05D014639 3.5e-06 56.6 258 23.6
Aa31sc15G210 Aethionema arabicum HOM05D000888 ORTHO05D000740 4.6e-06 56.2 229 24.9
Oeu064573.3 Olea europaea HOM05D000888 ORTHO05D000740 4.6e-06 56.2 224 25.0
HanXRQChr17g0570531 Helianthus annuus HOM05D009784 ORTHO05D010235 6.0e-06 55.8 85 34.1
PSO675G1309 Papaver somniferum HOM05D000395 ORTHO05D000088 6.0e-06 55.8 236 24.2
Rhsim10G0125600 Rhododendron simsii HOM05D000823 ORTHO05D000088 6.0e-06 55.8 263 21.3
Sp1g22120 Schrenkiella parvula HOM05D000888 ORTHO05D000740 6.0e-06 55.8 227 23.8
Sed0022882 Sechium edule HOM05D000823 ORTHO05D000088 7.8e-06 55.5 259 23.6


User provided reference genes

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