Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g065270.1 Solanum lycopersicum HOM05D000224 ORTHO05D000337 5.3e-22 106.7 50 100.0
Sopen02g015410 Solanum pennellii HOM05D000224 ORTHO05D000337 3.2e-19 97.4 50 90.0
Solyc02g065280.3 Solanum lycopersicum HOM05D000224 ORTHO05D000337 7.4e-16 86.3 50 76.0
Sopen02g015420 Solanum pennellii HOM05D000224 ORTHO05D000337 7.4e-16 86.3 50 76.0
PGSC0003DMG400028777 Solanum tuberosum HOM05D000224 ORTHO05D000337 3.7e-15 84.0 49 79.6
PGSC0003DMG400036760 Solanum tuberosum HOM05D000224 ORTHO05D000337 3.7e-15 84.0 49 79.6
Solyc03g070380.3 Solanum lycopersicum HOM05D000224 ORTHO05D000337 6.3e-15 83.2 50 80.0
Sopen03g019120 Solanum pennellii HOM05D000224 ORTHO05D000337 6.3e-15 83.2 50 80.0
PGSC0003DMG400000755 Solanum tuberosum HOM05D000224 ORTHO05D000337 6.3e-15 83.2 50 80.0
PGSC0003DMG400025728 Solanum tuberosum HOM05D000224 ORTHO05D000337 6.3e-15 83.2 50 80.0
Sopen02g015400 Solanum pennellii HOM05D000224 ORTHO05D000337 8.2e-15 82.8 50 80.0
PGSC0003DMG400000757 Solanum tuberosum HOM05D000224 ORTHO05D000337 1.4e-14 82.0 48 83.3
PGSC0003DMG400007654 Solanum tuberosum HOM05D000224 ORTHO05D000337 1.8e-14 81.6 50 78.0
Solyc02g065240.3 Solanum lycopersicum HOM05D000224 ORTHO05D000337 3.1e-14 80.9 48 81.2
Sopen02g015380 Solanum pennellii HOM05D000224 ORTHO05D000337 1.2e-13 79.0 48 79.2
Solyc02g065253.1 Solanum lycopersicum HOM05D000224 ORTHO05D000337 2.0e-13 78.2 49 75.5
PGSC0003DMG400000756 Solanum tuberosum HOM05D000224 ORTHO05D000337 1.3e-12 75.5 50 70.0
Sopen02g015390 Solanum pennellii HOM05D000224 ORTHO05D000337 2.9e-12 74.3 50 72.0
CAN.G533.13 Capsicum annuum HOM05D000224 ORTHO05D000337 4.2e-11 70.5 50 68.0
Nitab4.5_0003697g0020 Nicotiana tabacum HOM05D000224 ORTHO05D000337 4.2e-11 70.5 50 68.0
CAN.G533.10 Capsicum annuum HOM05D000224 ORTHO05D000337 7.2e-11 69.7 48 75.0
Peaxi162Scf00049g00019 Petunia axillaris HOM05D000224 ORTHO05D000337 2.1e-10 68.2 48 68.8
COL.COLO4_11338 Corchorus olitorius HOM05D000224 ORTHO05D000337 1.0e-09 65.9 49 61.2
Nitab4.5_0000806g0070 Nicotiana tabacum HOM05D000224 ORTHO05D000337 1.0e-09 65.9 50 66.0
CSS0034564 Camellia sinensis var. sinensis HOM05D000224 ORTHO05D000337 1.8e-09 65.1 50 58.0
Peaxi162Scf00019g00237 Petunia axillaris HOM05D000224 ORTHO05D000337 1.8e-09 65.1 48 66.7
Sc03g0001290 Simmondsia chinensis HOM05D000224 ORTHO05D000337 3.0e-09 64.3 48 58.3
Sc03g0001300 Simmondsia chinensis HOM05D000224 ORTHO05D000337 3.0e-09 64.3 48 58.3
CSS0045993 Camellia sinensis var. sinensis HOM05D000224 ORTHO05D000337 5.1e-09 63.5 50 56.0
Thecc.01G049300 Theobroma cacao HOM05D000224 ORTHO05D000337 5.1e-09 63.5 50 60.0
arahy.Tifrunner.gnm1.ann1.U84Q4I Arachis hypogaea HOM05D000224 ORTHO05D000337 6.7e-09 63.2 50 58.0
arahy.Tifrunner.gnm1.ann1.55W4VW Arachis hypogaea HOM05D000224 ORTHO05D000337 2.0e-08 61.6 48 58.3
arahy.Tifrunner.gnm1.ann1.BTM6YJ Arachis hypogaea HOM05D000224 ORTHO05D000337 2.0e-08 61.6 48 58.3
Dinv39905 Davidia involucrata HOM05D000224 ORTHO05D000337 2.6e-08 61.2 47 61.7
TAR381G0678 Trochodendron aralioides HOM05D000224 ORTHO05D000337 2.6e-08 61.2 48 60.4
Lj4g0002503 Lotus japonicus HOM05D000224 ORTHO05D000337 4.4e-08 60.5 50 58.0
TAR625G0936 Trochodendron aralioides HOM05D000224 ORTHO05D000337 4.4e-08 60.5 48 60.4
CiPaw.01G026000 Carya illinoinensis HOM05D000224 ORTHO05D000337 5.7e-08 60.1 50 58.0
Cfa004212 Carpinus fangiana HOM05D000224 ORTHO05D000337 7.4e-08 59.7 48 58.3
Cc05_g04670 Coffea canephora HOM05D000224 ORTHO05D000337 9.7e-08 59.3 47 59.6
Dinv43391 Davidia involucrata HOM05D000224 ORTHO05D000337 9.7e-08 59.3 50 56.0
Glyma.05G083600 Glycine max HOM05D000224 ORTHO05D000337 9.7e-08 59.3 50 58.0
Lalb_Chr05g0226901 Lupinus albus HOM05D000224 ORTHO05D000337 9.7e-08 59.3 45 60.0
TPR.G71 Trifolium pratense HOM05D000224 ORTHO05D000337 9.7e-08 59.3 50 54.0
GSVIVG01005065001 Vitis vinifera HOM05D000224 ORTHO05D000337 9.7e-08 59.3 48 56.2
Duzib147G0293 Durio zibethinus HOM05D000224 ORTHO05D000337 1.3e-07 58.9 50 54.0
Duzib187G0094 Durio zibethinus HOM05D000224 ORTHO05D000337 1.3e-07 58.9 48 56.2
Hma1.2p1_0546F.1_g176220 Hydrangea macrophylla HOM05D000224 ORTHO05D000337 1.3e-07 58.9 50 54.0
Phvul.003G248050 Phaseolus vulgaris HOM05D000224 ORTHO05D000337 1.3e-07 58.9 48 52.1
Haze_15196 Corylus avellana HOM05D000224 ORTHO05D000337 1.7e-07 58.5 45 62.2
MD15G1275500 Malus domestica HOM05D000224 ORTHO05D000337 1.7e-07 58.5 47 59.6
FvH4_1g14820 Fragaria vesca HOM05D000224 ORTHO05D000337 2.2e-07 58.2 48 60.4
FAN26G2997 Fragaria x ananassa HOM05D000224 ORTHO05D000337 2.2e-07 58.2 48 60.4
Phvul.003G248075 Phaseolus vulgaris HOM05D000224 ORTHO05D000337 2.2e-07 58.2 50 56.0
Psat4g089480 Pisum sativum HOM05D000224 ORTHO05D000337 2.2e-07 58.2 48 56.2
TPR.G11365 Trifolium pratense HOM05D000224 ORTHO05D000337 2.2e-07 58.2 48 54.2
Actinidia12076 Actinidia chinensis HOM05D000224 ORTHO05D000337 2.8e-07 57.8 46 54.3
Ciclev10026284m.g Citrus clementina HOM05D000224 ORTHO05D000337 2.8e-07 57.8 48 56.2
Glyma.02G063600 Glycine max HOM05D000224 ORTHO05D000337 2.8e-07 57.8 48 52.1
Gorai.007G209500 Gossypium raimondii HOM05D000224 ORTHO05D000337 2.8e-07 57.8 50 60.0
Medtr8g079120 Medicago truncatula HOM05D000224 ORTHO05D000337 2.8e-07 57.8 48 54.2
RcHm_v2.0_Chr1g0329881 Rosa chinensis HOM05D000224 ORTHO05D000337 2.8e-07 57.8 48 60.4
Ciclev10026277m.g Citrus clementina HOM05D000224 ORTHO05D000337 3.7e-07 57.4 48 56.2
Ciclev10032328m.g Citrus clementina HOM05D000224 ORTHO05D000337 3.7e-07 57.4 50 58.0
Eucgr.I01011 Eucalyptus grandis HOM05D000224 ORTHO05D000337 4.8e-07 57.0 48 60.4
Lj4g0017749 Lotus japonicus HOM05D000224 ORTHO05D000337 4.8e-07 57.0 48 56.2
Phvul.003G248025 Phaseolus vulgaris HOM05D000224 ORTHO05D000337 4.8e-07 57.0 48 56.2
SGA_v2.0_scaffold15G07235 Striga asiatica HOM05D000224 ORTHO05D000337 6.3e-07 56.6 48 54.2
Atru.chr3.444 Acer truncatum HOM05D000224 ORTHO05D000337 8.2e-07 56.2 48 56.2
CANSAT01G2647 Cannabis sativa HOM05D000224 ORTHO05D000337 8.2e-07 56.2 48 54.2
AUR62003830 Chenopodium quinoa HOM05D000224 ORTHO05D000337 8.2e-07 56.2 43 60.5
Cc07_g05610 Coffea canephora HOM05D000224 ORTHO05D000337 8.2e-07 56.2 45 55.6
FAN19G0917 Fragaria x ananassa HOM05D000224 ORTHO05D000337 8.2e-07 56.2 48 58.3
Aa31LG6G13850 Aethionema arabicum HOM05D000224 ORTHO05D000337 1.1e-06 55.8 48 54.2
Aqoxy6G00911 Aquilegia oxysepala HOM05D000224 ORTHO05D000337 1.1e-06 55.8 48 52.1
COL.COLO4_11333 Corchorus olitorius HOM05D000224 ORTHO05D000337 1.1e-06 55.8 45 62.2
Migut.H00480 Erythranthe guttata HOM05D000224 ORTHO05D000337 1.1e-06 55.8 48 56.2
Lj4A137T60 Lonicera japonica HOM05D000224 ORTHO05D000337 1.1e-06 55.8 47 57.4
RcHm_v2.0_Chr2g0103791 Rosa chinensis HOM05D000224 ORTHO05D000337 1.1e-06 55.8 48 58.3
TWI73G0474 Tripterygium wilfordii HOM05D000224 ORTHO05D000337 1.1e-06 55.8 50 56.0
C01p02130 Brassica napus HOM05D000224 ORTHO05D000337 1.4e-06 55.5 48 56.2
BolC1t00205H Brassica oleracea HOM05D000224 ORTHO05D000337 1.4e-06 55.5 48 56.2
Cfa004214 Carpinus fangiana HOM05D000224 ORTHO05D000337 1.4e-06 55.5 46 56.5
Ciclev10033393m.g Citrus clementina HOM05D000224 ORTHO05D000337 1.4e-06 55.5 48 56.2
Dinv39904 Davidia involucrata HOM05D000224 ORTHO05D000337 1.4e-06 55.5 50 50.0
Eucgr.I01006 Eucalyptus grandis HOM05D000224 ORTHO05D000337 1.4e-06 55.5 48 58.3
Glyma.11G059551 Glycine max HOM05D000224 ORTHO05D000337 1.4e-06 55.5 47 55.3
Prupe.7G142200 Prunus persica HOM05D000224 ORTHO05D000337 1.4e-06 55.5 48 50.0
PGSC0003DMG400010729 Solanum tuberosum HOM05D000224 ORTHO05D000337 1.4e-06 55.5 50 54.0
PGSC0003DMG400025917 Solanum tuberosum HOM05D000224 ORTHO05D000337 1.4e-06 55.5 50 54.0
Thecc.01G049000 Theobroma cacao HOM05D000224 ORTHO05D000337 1.4e-06 55.5 45 62.2
TPR.G20339 Trifolium pratense HOM05D000224 ORTHO05D000337 1.4e-06 55.5 47 55.3
HPP92_005983 Vanilla planifolia HOM05D000224 ORTHO05D000337 1.4e-06 55.5 48 54.2
VMungo0251G1778 Vigna mungo HOM05D000224 ORTHO05D000337 1.4e-06 55.5 48 54.2
GSVIVG01005061001 Vitis vinifera HOM05D000224 ORTHO05D000337 1.4e-06 55.5 48 58.3
BcaNung03511 Brassica carinata HOM05D000224 ORTHO05D000337 1.8e-06 55.1 48 56.2
Hma1.2p1_0687F.1_g203500 Hydrangea macrophylla HOM05D000224 ORTHO05D000337 1.8e-06 55.1 48 54.2
Lj4g0014224 Lotus japonicus HOM05D000224 ORTHO05D000337 1.8e-06 55.1 48 54.2
vmacro05298 Vaccinium macrocarpon HOM05D000224 ORTHO05D000337 1.8e-06 55.1 50 54.0
Carub.0004s0278 Capsella rubella HOM05D000224 ORTHO05D000337 2.4e-06 54.7 48 52.1
Dinv26743 Davidia involucrata HOM05D000224 ORTHO05D000337 2.4e-06 54.7 48 54.2
Thhalv10026033m.g Eutrema salsugineum HOM05D000224 ORTHO05D000337 2.4e-06 54.7 48 54.2
FAN28G0454 Fragaria x ananassa HOM05D000224 ORTHO05D000337 2.4e-06 54.7 45 60.0
TPR.G30324 Trifolium pratense HOM05D000224 ORTHO05D000337 2.4e-06 54.7 47 55.3
VMungo0251G2297 Vigna mungo HOM05D000224 ORTHO05D000337 2.4e-06 54.7 48 56.2
arahy.Tifrunner.gnm1.ann1.I79A46 Arachis hypogaea HOM05D000224 ORTHO05D000337 3.1e-06 54.3 50 52.0
unitig_899.g14652 Utricularia gibba HOM05D000224 ORTHO05D000337 3.1e-06 54.3 48 54.2
Aa31LG7G13250 Aethionema arabicum HOM05D000224 ORTHO05D000337 4.1e-06 53.9 48 50.0
MSTRG.23790 Avicennia marina HOM05D000224 ORTHO05D000337 4.1e-06 53.9 48 54.2
BcaNung04511 Brassica carinata HOM05D000224 ORTHO05D000337 4.1e-06 53.9 46 52.2
BraA03t15541Z Brassica rapa HOM05D000224 ORTHO05D000337 4.1e-06 53.9 46 52.2
Ciclev10032396m.g Citrus clementina HOM05D000224 ORTHO05D000337 4.1e-06 53.9 48 56.2
Dinv26742 Davidia involucrata HOM05D000224 ORTHO05D000337 4.1e-06 53.9 48 54.2
Gohir.D11G195700 Gossypium hirsutum HOM05D000224 ORTHO05D000337 4.1e-06 53.9 50 56.0
MD02G1161400 Malus domestica HOM05D000224 ORTHO05D000337 4.1e-06 53.9 46 56.5
BcaB06g27912 Brassica carinata HOM05D000224 ORTHO05D000337 5.3e-06 53.5 48 50.0
A03p27880 Brassica napus HOM05D000224 ORTHO05D000337 5.3e-06 53.5 48 50.0
CiPaw.01G026400 Carya illinoinensis HOM05D000224 ORTHO05D000337 5.3e-06 53.5 50 48.0
Cc05_g04640 Coffea canephora HOM05D000224 ORTHO05D000337 5.3e-06 53.5 47 55.3
COL.COLO4_11334 Corchorus olitorius HOM05D000224 ORTHO05D000337 5.3e-06 53.5 48 54.2
Eucgr.I01001 Eucalyptus grandis HOM05D000224 ORTHO05D000337 5.3e-06 53.5 48 54.2
Eucgr.I01007 Eucalyptus grandis HOM05D000224 ORTHO05D000337 5.3e-06 53.5 48 56.2
Lj4C138T19 Lonicera japonica HOM05D000224 ORTHO05D000337 5.3e-06 53.5 48 54.2
Manes.12G096000 Manihot esculenta HOM05D000224 ORTHO05D000337 5.3e-06 53.5 46 54.3
Phvul.002G022300 Phaseolus vulgaris HOM05D000224 ORTHO05D000337 5.3e-06 53.5 44 59.1
Hund13584 Selenicereus undatus HOM05D000224 ORTHO05D000337 5.3e-06 53.5 45 53.3
VMungo1215G2094 Vigna mungo HOM05D000224 ORTHO05D000337 5.3e-06 53.5 44 59.1
Ah.03g144080 Amaranthus hybridus HOM05D000224 ORTHO05D000337 7.0e-06 53.1 42 52.4
Aqoxy6G00909 Aquilegia oxysepala HOM05D000224 ORTHO05D000337 7.0e-06 53.1 50 50.0
Aqoxy6G00910 Aquilegia oxysepala HOM05D000224 ORTHO05D000337 7.0e-06 53.1 48 47.9
CSS0017573 Camellia sinensis var. sinensis HOM05D000224 ORTHO05D000337 7.0e-06 53.1 49 53.1
Cc00_g14520 Coffea canephora HOM05D000224 ORTHO05D000337 7.0e-06 53.1 48 52.1
MBI15_g18191_MAGBIO Magnolia biondii HOM05D000224 ORTHO05D000337 7.0e-06 53.1 46 52.2
TWI73G0174 Tripterygium wilfordii HOM05D000224 ORTHO05D000337 7.0e-06 53.1 50 54.0
TAR625G1073 Trochodendron aralioides HOM05D000224 ORTHO05D000337 7.0e-06 53.1 50 50.0
AL4G13550 Arabidopsis lyrata HOM05D000224 ORTHO05D000337 9.1e-06 52.8 48 50.0
arahy.Tifrunner.gnm1.ann1.1DZ6TK Arachis hypogaea HOM05D000224 ORTHO05D000337 9.1e-06 52.8 50 50.0
MSTRG.2912 Avicennia marina HOM05D000224 ORTHO05D000337 9.1e-06 52.8 50 52.0
EL10Ac6g15142 Beta vulgaris HOM05D000224 ORTHO05D000337 9.1e-06 52.8 44 52.3
A04p18000 Brassica napus HOM05D000224 ORTHO05D000337 9.1e-06 52.8 48 50.0
Ciclev10032394m.g Citrus clementina HOM05D000224 ORTHO05D000337 9.1e-06 52.8 48 54.2
Thhalv10000384m.g Eutrema salsugineum HOM05D000224 ORTHO05D000337 9.1e-06 52.8 48 50.0
FAN23G0082 Fragaria x ananassa HOM05D006685 ORTHO05D008244 9.1e-06 52.8 44 59.1
FAN28G0684 Fragaria x ananassa HOM05D006685 ORTHO05D008244 9.1e-06 52.8 44 59.1
FAN28G1646 Fragaria x ananassa HOM05D006685 ORTHO05D008244 9.1e-06 52.8 44 59.1


User provided reference genes

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