Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g065180.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 1.2e-123 446.4 218 100.0
Sopen02g015310 Solanum pennellii HOM05D005053 ORTHO05D006206 1.2e-123 446.4 218 100.0
CAN.G470.7 Capsicum annuum HOM05D005053 ORTHO05D006206 3.7e-120 434.9 218 97.2
Nitab4.5_0000806g0140 Nicotiana tabacum HOM05D005053 ORTHO05D006206 6.1e-115 417.5 218 94.0
Peaxi162Scf00049g01010 Petunia axillaris HOM05D005053 ORTHO05D006206 2.3e-109 399.1 231 86.1
Cc07_g05640 Coffea canephora HOM05D005053 ORTHO05D006206 4.6e-102 374.8 219 83.6
HanXRQChr07g0199901 Helianthus annuus HOM05D005053 ORTHO05D006206 5.6e-100 367.9 219 81.7
HanXRQChr14g0448331 Helianthus annuus HOM05D005053 ORTHO05D006206 1.2e-99 366.7 219 81.7
Migut.H00475 Erythranthe guttata HOM05D005053 ORTHO05D006206 1.0e-98 363.6 219 80.8
Lsat_1_v5_gn_2_86920 Lactuca sativa HOM05D005053 ORTHO05D006206 1.8e-98 362.8 219 80.4
Nitab4.5_0009901g0010 Nicotiana tabacum HOM05D005053 ORTHO05D006206 1.8e-98 362.8 203 88.7
Actinidia12070 Actinidia chinensis HOM05D005053 ORTHO05D006206 2.3e-98 362.5 219 81.3
CSS0024932 Camellia sinensis var. sinensis HOM05D005053 ORTHO05D006206 5.2e-98 361.3 219 79.5
ECA238G1636 Erigeron canadensis HOM05D005053 ORTHO05D006206 2.6e-97 359.0 219 79.9
Lj4g0026236 Lotus japonicus HOM05D005053 ORTHO05D006206 3.4e-97 358.6 219 78.1
Actinidia36514 Actinidia chinensis HOM05D005053 ORTHO05D006206 4.4e-97 358.2 219 81.7
Glyma.17G180900 Glycine max HOM05D005053 ORTHO05D006206 9.8e-97 357.1 219 78.5
Ca_22210_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 1.7e-96 356.3 219 79.0
arahy.Tifrunner.gnm1.ann1.VE46QQ Arachis hypogaea HOM05D005053 ORTHO05D006206 1.9e-95 352.8 219 78.5
RcHm_v2.0_Chr2g0104011 Rosa chinensis HOM05D005053 ORTHO05D006206 2.4e-95 352.4 220 79.1
Lalb_Chr09g0333681 Lupinus albus HOM05D005053 ORTHO05D006206 3.2e-95 352.1 219 77.2
Aqoxy6G00906 Aquilegia oxysepala HOM05D005053 ORTHO05D006206 4.1e-95 351.7 219 78.5
MELO3C007534.2 Cucumis melo HOM05D005053 ORTHO05D006206 4.1e-95 351.7 221 77.4
Hma1.2p1_0687F.1_g203520 Hydrangea macrophylla HOM05D005053 ORTHO05D006206 4.1e-95 351.7 219 77.6
arahy.Tifrunner.gnm1.ann1.IMYE37 Arachis hypogaea HOM05D005053 ORTHO05D006206 5.4e-95 351.3 219 78.1
ClCG01G016600 Citrullus lanatus HOM05D005053 ORTHO05D006206 5.4e-95 351.3 221 77.8
CsaV3_6G042980 Cucumis sativus L. HOM05D005053 ORTHO05D006206 7.0e-95 350.9 221 77.4
PGR102G2816 Punica granatum HOM05D005053 ORTHO05D006206 7.0e-95 350.9 219 77.2
Atru.chr3.440 Acer truncatum HOM05D005053 ORTHO05D006206 1.2e-94 350.1 219 79.0
Manes.13G129200 Manihot esculenta HOM05D005053 ORTHO05D006206 1.2e-94 350.1 219 78.1
Thecc.01G049700 Theobroma cacao HOM05D005053 ORTHO05D006206 1.6e-94 349.7 220 79.5
Phvul.003G248000 Phaseolus vulgaris HOM05D005053 ORTHO05D006206 2.7e-94 349.0 219 77.2
GSVIVG01005060001 Vitis vinifera HOM05D005053 ORTHO05D006206 2.7e-94 349.0 219 77.6
Medtr8g079240 Medicago truncatula HOM05D005053 ORTHO05D006206 4.6e-94 348.2 219 76.7
MD15G1276200 Malus domestica HOM05D005053 ORTHO05D006206 6.0e-94 347.8 219 77.6
Cpa.g.sc6.408 Carica papaya HOM05D005053 ORTHO05D006206 7.8e-94 347.4 219 77.2
COL.COLO4_11341 Corchorus olitorius HOM05D005053 ORTHO05D006206 7.8e-94 347.4 219 78.1
Sc03g0001310 Simmondsia chinensis HOM05D005053 ORTHO05D006206 1.0e-93 347.1 218 78.0
SGA_v2.0_scaffold27G11440 Striga asiatica HOM05D005053 ORTHO05D006206 1.0e-93 347.1 220 76.8
Gorai.008G072800 Gossypium raimondii HOM05D005053 ORTHO05D006206 1.3e-93 346.7 219 77.6
vmacro17912 Vaccinium macrocarpon HOM05D005053 ORTHO05D006206 1.3e-93 346.7 219 75.8
VMungo0251G0766 Vigna mungo HOM05D005053 ORTHO05D006206 1.3e-93 346.7 219 77.6
unitig_736.g22369 Utricularia gibba HOM05D005053 ORTHO05D006206 1.7e-93 346.3 221 76.5
Sed0021889 Sechium edule HOM05D005053 ORTHO05D006206 2.3e-93 345.9 220 76.8
SGA_v2.0_scaffold204G41608 Striga asiatica HOM05D005053 ORTHO05D006206 2.3e-93 345.9 220 76.4
FvH4_1g14960 Fragaria vesca HOM05D005053 ORTHO05D006206 5.0e-93 344.7 221 78.7
MD02G1163200 Malus domestica HOM05D005053 ORTHO05D006206 8.6e-93 344.0 220 77.7
FAN26G1713 Fragaria x ananassa HOM05D005053 ORTHO05D006206 1.1e-92 343.6 221 78.3
FAN23G1215 Fragaria x ananassa HOM05D005053 ORTHO05D006206 1.5e-92 343.2 221 77.8
EL10Ac6g15144 Beta vulgaris HOM05D005053 ORTHO05D006206 5.6e-92 341.3 218 77.1
FAN19G0163 Fragaria x ananassa HOM05D005053 ORTHO05D006206 5.6e-92 341.3 221 77.8
Oeu004887.1 Olea europaea HOM05D005053 ORTHO05D006206 7.3e-92 340.9 219 77.6
AUR62001971 Chenopodium quinoa HOM05D005053 ORTHO05D006206 9.5e-92 340.5 218 76.6
Hund13583 Selenicereus undatus HOM05D005053 ORTHO05D006206 9.5e-92 340.5 218 74.3
Cfa003962 Carpinus fangiana HOM05D005053 ORTHO05D006206 3.6e-91 338.6 220 76.4
MSTRG.15402 Avicennia marina HOM05D005053 ORTHO05D006206 6.2e-91 337.8 228 73.2
FAN28G1734 Fragaria x ananassa HOM05D005053 ORTHO05D006206 6.2e-91 337.8 222 77.5
Ciclev10026393m.g Citrus clementina HOM05D005053 ORTHO05D006206 3.1e-90 335.5 237 72.2
TAR376G0500 Trochodendron aralioides HOM05D005053 ORTHO05D006206 1.2e-89 333.6 219 75.8
PSO675G4006 Papaver somniferum HOM05D005053 ORTHO05D006206 9.8e-89 330.5 219 74.9
THA.LOC104819229 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 1.7e-88 329.7 219 74.0
Eucgr.H01988 Eucalyptus grandis HOM05D005053 ORTHO05D006206 2.2e-88 329.3 219 72.1
PSO541G4895 Papaver somniferum HOM05D005053 ORTHO05D006206 2.2e-88 329.3 219 74.9
Potri.007G037800 Populus trichocarpa HOM05D005053 ORTHO05D006206 2.4e-87 325.9 219 74.0
THA.LOC104821262 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 5.4e-87 324.7 219 72.6
Nn6g32115 Nelumbo nucifera HOM05D005053 ORTHO05D006206 1.6e-86 323.2 220 71.8
CARHR280750 Cardamine hirsuta HOM05D005053 ORTHO05D006206 1.0e-85 320.5 218 72.5
AL8G44450 Arabidopsis lyrata HOM05D005053 ORTHO05D006206 1.3e-85 320.1 219 73.1
Carub.0008s2757 Capsella rubella HOM05D005053 ORTHO05D006206 2.3e-85 319.3 219 72.6
Nn5g29376 Nelumbo nucifera HOM05D005053 ORTHO05D006206 3.0e-85 318.9 219 73.1
Peaxi162Scf00993g00120 Petunia axillaris HOM05D005053 ORTHO05D006206 3.0e-85 318.9 192 78.1
Dinv29944 Davidia involucrata HOM05D005053 ORTHO05D006206 5.1e-85 318.2 197 78.7
AT5G66930 Arabidopsis thaliana HOM05D005053 ORTHO05D006206 8.6e-85 317.4 219 73.1
Aa31LG1G15480 Aethionema arabicum HOM05D005053 ORTHO05D006206 4.3e-84 315.1 219 72.1
Sp2g29730 Schrenkiella parvula HOM05D005053 ORTHO05D006206 5.6e-84 314.7 219 72.6
Ca_22228_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 2.3e-82 309.3 192 77.6
PGSC0003DMG400010070 Solanum tuberosum HOM05D005053 ORTHO05D006206 5.2e-82 308.1 212 70.8
BcaB04g20086 Brassica carinata HOM05D005053 ORTHO05D006206 1.5e-81 306.6 220 70.5
Gohir.A12G069100 Gossypium hirsutum HOM05D005053 ORTHO05D006206 9.9e-81 303.9 192 77.6
Rhsim08G0104900 Rhododendron simsii HOM05D005053 ORTHO05D006206 1.7e-80 303.1 299 55.5
Solyc02g090330.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 1.7e-80 303.1 212 68.9
Gohir.D12G090200 Gossypium hirsutum HOM05D005053 ORTHO05D006206 2.2e-80 302.8 192 76.6
TAR628G0491 Trochodendron aralioides HOM05D005053 ORTHO05D006206 8.4e-80 300.8 192 77.1
CiPaw.01G025900 Carya illinoinensis HOM05D005053 ORTHO05D006206 1.1e-79 300.4 196 76.0
ATR0225G009 Amborella trichopoda HOM05D005053 ORTHO05D006206 1.4e-79 300.1 220 68.6
Thhalv10005270m.g Eutrema salsugineum HOM05D005053 ORTHO05D006206 2.4e-79 299.3 211 71.1
QL06p043337 Quercus lobata HOM05D005053 ORTHO05D006206 2.4e-79 299.3 196 76.5
Haze_15460 Corylus avellana HOM05D005053 ORTHO05D006206 5.4e-79 298.1 199 75.4
A09p09640 Brassica napus HOM05D005053 ORTHO05D006206 9.2e-79 297.4 220 69.1
AUR62003832 Chenopodium quinoa HOM05D005053 ORTHO05D006206 9.2e-79 297.4 191 76.4
BcaC04g23174 Brassica carinata HOM05D005053 ORTHO05D006206 2.7e-78 295.8 221 68.3
C09p11390 Brassica napus HOM05D005053 ORTHO05D006206 2.7e-78 295.8 221 68.3
BcaC06g34767 Brassica carinata HOM05D005053 ORTHO05D006206 6.0e-78 294.7 220 69.1
C07p24820 Brassica napus HOM05D005053 ORTHO05D006206 6.0e-78 294.7 220 69.1
TWI53G1273 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 7.8e-78 294.3 194 73.7
Duzib264G0045 Durio zibethinus HOM05D005053 ORTHO05D006206 1.0e-77 293.9 192 74.5
BolC9t54027H Brassica oleracea HOM05D005053 ORTHO05D006206 2.3e-77 292.7 222 67.6
BraA09t36613Z Brassica rapa HOM05D005053 ORTHO05D006206 2.3e-77 292.7 220 67.7
BraA07t29424Z Brassica rapa HOM05D005053 ORTHO05D006206 3.9e-77 292.0 219 67.6
TWI09G0689 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 3.9e-77 292.0 197 72.6
Duzib264G0685 Durio zibethinus HOM05D005053 ORTHO05D006206 1.1e-76 290.4 192 74.0
A07p16970 Brassica napus HOM05D005053 ORTHO05D006206 1.9e-76 289.7 219 66.7
Ah.02g124120 Amaranthus hybridus HOM05D005053 ORTHO05D006206 2.5e-76 289.3 209 69.4
BcaB02g09970 Brassica carinata HOM05D005053 ORTHO05D006206 7.3e-76 287.7 219 67.6
SEGI_13826 Sequoiadendron giganteum HOM05D005053 ORTHO05D006206 9.6e-76 287.3 219 64.4
HPP92_024294 Vanilla planifolia HOM05D005053 ORTHO05D006206 1.6e-75 286.6 220 67.3
HPP92_024303 Vanilla planifolia HOM05D005053 ORTHO05D006206 1.6e-75 286.6 220 67.3
Duzib147G0596 Durio zibethinus HOM05D005053 ORTHO05D006206 4.7e-75 285.0 192 74.5
RhsimUnG0070600 Rhododendron simsii HOM05D005053 ORTHO05D006206 4.0e-74 282.0 288 54.2
Sabra07G0034100 Salix brachista HOM05D005053 ORTHO05D006206 2.9e-72 275.8 196 70.9
CiPaw.02G011700 Carya illinoinensis HOM05D005053 ORTHO05D006206 2.4e-71 272.7 221 66.1
BolC7t43007H Brassica oleracea HOM05D005053 ORTHO05D006206 5.4e-71 271.6 209 67.5
Mapoly0011s0084 Marchantia polymorpha HOM05D005053 ORTHO05D006206 1.2e-70 270.4 222 60.8
Lj7A44T18 Lonicera japonica HOM05D005053 ORTHO05D006206 2.1e-70 269.6 179 74.9
SMO271G0126 Selaginella moellendorffii HOM05D005053 ORTHO05D006206 7.8e-70 267.7 218 59.2
Nitab4.5_0002157g0070 Nicotiana tabacum HOM05D005053 ORTHO05D006206 3.0e-69 265.8 168 76.2
MBI16_g19902_MAGBIO Magnolia biondii HOM05D005053 ORTHO05D006206 8.7e-69 264.2 183 71.6
Dinv39902 Davidia involucrata HOM05D005053 ORTHO05D006206 2.1e-67 259.6 171 72.5
DCAR_025697 Daucus carota HOM05D005053 ORTHO05D006206 8.1e-67 257.7 169 74.6
BcaC03g18393 Brassica carinata HOM05D005053 ORTHO05D006206 1.5e-65 253.4 226 61.1
C02p64670 Brassica napus HOM05D005053 ORTHO05D006206 1.5e-65 253.4 226 61.1
Os12g0428200 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 2.2e-64 249.6 219 59.8
BolC2t12528H Brassica oleracea HOM05D005053 ORTHO05D006206 6.4e-64 248.1 221 61.1
Prupe.7G140800 Prunus persica HOM05D005053 ORTHO05D006206 4.2e-63 245.4 163 77.3
Pp3c11_5110 Physcomitrium patens HOM05D005053 ORTHO05D006206 1.5e-60 236.9 226 54.4
Zm00001eb184240 Zea mays HOM05D005053 ORTHO05D006206 9.6e-60 234.2 218 56.9
Psat4g088960 Pisum sativum HOM05D005053 ORTHO05D006206 4.8e-59 231.9 157 73.2
Ah.03g144090 Amaranthus hybridus HOM05D005053 ORTHO05D006206 1.1e-58 230.7 194 63.4
AagrBONN_evm.TU.Sc2ySwM_344.1822 Anthoceros agrestis HOM05D005053 ORTHO05D006206 2.4e-58 229.6 222 51.8
AagrBONN_evm.TU.Sc2ySwM_344.1821 Anthoceros agrestis HOM05D005053 ORTHO05D006206 1.2e-57 227.3 194 59.8
CBR_g23008 Chara braunii HOM05D005053 ORTHO05D006206 1.5e-57 226.9 221 52.0
Sopen02g035010 Solanum pennellii HOM05D005053 ORTHO05D006206 4.9e-56 221.9 159 67.3
Os12g0446700 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 2.4e-55 219.5 192 59.4
Psat4g089040 Pisum sativum HOM05D005053 ORTHO05D006206 3.5e-46 189.1 181 56.4
AagrBONN_evm.TU.Sc2ySwM_369.468 Anthoceros agrestis HOM05D000050 ORTHO05D000771 6.7e-45 184.9 218 45.4
CDE02G0556 Ceratophyllum demersum HOM05D005053 ORTHO05D006206 2.9e-40 169.5 148 56.8
TPR.G40637 Trifolium pratense HOM05D005053 ORTHO05D006206 2.5e-39 166.4 93 84.9
SGA_v2.0_scaffold15G07238 Striga asiatica HOM05D005053 ORTHO05D006206 8.7e-37 157.9 247 41.7
MCO07G250 Micromonas commoda HOM05D005053 ORTHO05D006206 3.1e-34 149.4 220 38.2
Cre07.g334700 Chlamydomonas reinhardtii HOM05D005053 ORTHO05D006206 4.5e-33 145.6 231 36.4
TPR.G672 Trifolium pratense HOM05D005053 ORTHO05D006206 1.7e-32 143.7 98 70.4
Nitab4.5_0003750g0060 Nicotiana tabacum HOM05D005053 ORTHO05D006206 2.7e-30 136.3 139 51.8
PRCOL_00006110 Prasinoderma coloniale HOM05D005053 ORTHO05D006206 2.6e-28 129.8 217 34.6
FAN19G1388 Fragaria x ananassa HOM05D005053 ORTHO05D006206 3.7e-27 125.9 84 72.6
Zm00001eb184160 Zea mays HOM05D005053 ORTHO05D006206 1.5e-25 120.6 91 62.6
AUR62028910 Chenopodium quinoa HOM05D005053 ORTHO05D006206 1.7e-19 100.5 92 56.5
Ciclev10027037m.g Citrus clementina HOM05D005053 ORTHO05D006206 3.1e-18 96.3 81 65.4
CAN.G836.41 Capsicum annuum HOM05D005053 ORTHO05D024763 5.2e-13 79.0 144 41.0
Cfa024505 Carpinus fangiana HOM05D005053 ORTHO05D124968 1.9e-07 60.5 205 22.9


User provided reference genes

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