Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g064590.2 Solanum lycopersicum HOM05D004959 ORTHO05D005961 0.0e+00 2270.0 1154 100.0
Solyc02g064620.2 Solanum lycopersicum HOM05D004959 ORTHO05D005961 0.0e+00 2270.0 1154 100.0
Sopen02g014720 Solanum pennellii HOM05D004959 ORTHO05D005961 0.0e+00 2219.5 1154 97.8
PGSC0003DMG400003329 Solanum tuberosum HOM05D004959 ORTHO05D005961 0.0e+00 2142.5 1155 94.7
Nitab4.5_0000036g0080 Nicotiana tabacum HOM05D004959 ORTHO05D005961 0.0e+00 1791.2 1151 79.8
Nitab4.5_0010326g0010 Nicotiana tabacum HOM05D004959 ORTHO05D005961 0.0e+00 1772.7 1128 79.9
Peaxi162Scf00449g00320 Petunia axillaris HOM05D004959 ORTHO05D005961 0.0e+00 1240.7 870 74.1
Dinv04263 Davidia involucrata HOM05D004959 ORTHO05D005961 1.5e-281 973.4 1178 47.5
Dinv06304 Davidia involucrata HOM05D004959 ORTHO05D005961 1.9e-279 966.5 1179 47.2
Oeu021359.1 Olea europaea HOM05D004959 ORTHO05D005961 5.0e-256 888.6 1172 43.3
Migut.E00705 Erythranthe guttata HOM05D004959 ORTHO05D005961 3.4e-249 865.9 1167 43.8
Cc04_g10880 Coffea canephora HOM05D004959 ORTHO05D005961 3.2e-247 859.4 1165 43.6
Cfa000659 Carpinus fangiana HOM05D004959 ORTHO05D005961 3.9e-245 852.4 1178 43.4
Hma1.2p1_0137F.1_g062550 Hydrangea macrophylla HOM05D004959 ORTHO05D005961 9.7e-244 847.8 1182 43.5
Rhsim02G0134800 Rhododendron simsii HOM05D004959 ORTHO05D005961 3.7e-243 845.9 1155 43.9
vmacro15931 Vaccinium macrocarpon HOM05D004959 ORTHO05D005961 1.6e-241 840.5 1183 42.7
QL04p014830 Quercus lobata HOM05D004959 ORTHO05D005961 3.5e-241 839.3 1182 42.1
QL04p014466 Quercus lobata HOM05D004959 ORTHO05D005961 7.7e-241 838.2 1182 41.8
GSVIVG01032944001 Vitis vinifera HOM05D004959 ORTHO05D005961 1.0e-240 837.8 1182 41.0
Migut.E00612 Erythranthe guttata HOM05D004959 ORTHO05D005961 2.5e-239 833.2 1166 42.9
Lj3A850G96 Lonicera japonica HOM05D004959 ORTHO05D005961 4.2e-239 832.4 1188 42.2
Rhsim01G0101500 Rhododendron simsii HOM05D004959 ORTHO05D005961 1.8e-237 827.0 1169 42.8
Actinidia07601 Actinidia chinensis HOM05D004959 ORTHO05D005961 5.3e-234 815.5 1173 42.0
Cpa.g.sc30.122 Carica papaya HOM05D004959 ORTHO05D005961 9.1e-226 788.1 1164 40.1
Prupe.3G104300 Prunus persica HOM05D004959 ORTHO05D005961 1.2e-225 787.7 1172 40.9
CAN.G370.71 Capsicum annuum HOM05D004959 ORTHO05D005961 5.4e-218 762.3 445 87.6
MD13G1224700 Malus domestica HOM05D004959 ORTHO05D005961 3.6e-214 749.6 1153 40.2
Manes.16G050600 Manihot esculenta HOM05D004959 ORTHO05D005961 2.3e-213 746.9 1185 38.6
Thecc.02G004800 Theobroma cacao HOM05D004959 ORTHO05D005961 2.3e-213 746.9 1177 38.3
TWI63G1138 Tripterygium wilfordii HOM05D004959 ORTHO05D005961 1.2e-212 744.6 1178 39.1
Potri.018G118800 Populus trichocarpa HOM05D004959 ORTHO05D005961 1.7e-211 740.7 1194 38.6
Sabra18G0102400 Salix brachista HOM05D004959 ORTHO05D005961 1.4e-210 737.6 1180 38.4
SGA_v2.0_scaffold36G14263 Striga asiatica HOM05D004959 ORTHO05D005961 7.5e-204 715.3 1143 37.9
Gohir.D12G047700 Gossypium hirsutum HOM05D004959 ORTHO05D005961 9.8e-204 714.9 1180 36.8
Nn3g21093 Nelumbo nucifera HOM05D004959 ORTHO05D005961 2.2e-203 713.8 1171 37.7
ClCG09G011850 Citrullus lanatus HOM05D004959 ORTHO05D005961 1.3e-200 704.5 1191 38.0
Sed0018634 Sechium edule HOM05D004959 ORTHO05D005961 8.6e-200 701.8 1187 37.2
Gorai.008G050400 Gossypium raimondii HOM05D004959 ORTHO05D005961 1.5e-199 701.0 1213 35.9
Gohir.A12G049000 Gossypium hirsutum HOM05D004959 ORTHO05D005961 5.6e-199 699.1 1212 35.8
CANSAT25G2352 Cannabis sativa HOM05D004959 ORTHO05D005961 1.6e-198 697.6 1169 37.8
CsaV3_5G015760 Cucumis sativus L. HOM05D004959 ORTHO05D005961 2.1e-198 697.2 1187 36.6
DCAR_026905 Daucus carota HOM05D004959 ORTHO05D005961 6.8e-197 692.2 1183 37.4
ECA233G2209 Erigeron canadensis HOM05D004959 ORTHO05D005961 3.4e-196 689.9 1172 38.2
MELO3C026444.2 Cucumis melo HOM05D004959 ORTHO05D005961 4.4e-196 689.5 1199 36.9
FvH4_4g05080 Fragaria vesca HOM05D004959 ORTHO05D005961 2.9e-195 686.8 1168 38.0
Sc10g0002790 Simmondsia chinensis HOM05D004959 ORTHO05D005961 3.7e-195 686.4 1157 37.5
COL.COLO4_18025 Corchorus olitorius HOM05D004959 ORTHO05D005961 3.2e-194 683.3 1182 36.4
Eucgr.I01567 Eucalyptus grandis HOM05D004959 ORTHO05D005961 3.0e-192 676.8 1181 37.9
FAN12G3376 Fragaria x ananassa HOM05D004959 ORTHO05D005961 3.9e-192 676.4 1178 37.6
PSO017G0156 Papaver somniferum HOM05D004959 ORTHO05D005961 5.1e-192 676.0 1176 37.5
RcHm_v2.0_Chr4g0396011 Rosa chinensis HOM05D004959 ORTHO05D005961 2.1e-190 670.6 1169 37.8
HanXRQChr12g0366411 Helianthus annuus HOM05D004959 ORTHO05D005961 2.8e-190 670.2 1175 37.2
SGA_v2.0_scaffold99G29470 Striga asiatica HOM05D004959 ORTHO05D005961 2.8e-190 670.2 1126 37.2
Aqoxy3G03508 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 8.1e-190 668.7 1186 36.7
FAN22G0965 Fragaria x ananassa HOM05D004959 ORTHO05D005961 7.1e-186 655.6 1176 37.2
Aqoxy5G03195 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 1.7e-184 651.0 1187 36.4
PSO478G1937 Papaver somniferum HOM05D004959 ORTHO05D005961 1.7e-184 651.0 1175 37.0
MBI07_g42017_MAGBIO Magnolia biondii HOM05D004959 ORTHO05D005961 8.9e-181 638.6 1260 35.3
AL7G33790 Arabidopsis lyrata HOM05D004959 ORTHO05D005961 1.7e-179 634.4 1168 34.7
Lsat_1_v5_gn_8_33541 Lactuca sativa HOM05D004959 ORTHO05D005961 1.1e-178 631.7 1159 36.3
AT4G20060 Arabidopsis thaliana HOM05D004959 ORTHO05D005961 5.4e-178 629.4 1168 34.3
Glyma.19G032700 Glycine max HOM05D004959 ORTHO05D005961 1.6e-177 627.9 1175 36.4
EL10Ac2g04300 Beta vulgaris HOM05D004959 ORTHO05D005961 4.6e-177 626.3 1169 36.0
FAN17G1136 Fragaria x ananassa HOM05D004959 ORTHO05D005961 4.6e-177 626.3 1175 36.4
PGR142G3977 Punica granatum HOM05D004959 ORTHO05D005961 3.9e-176 623.2 1175 34.8
CiPaw.10G061900 Carya illinoinensis HOM05D004959 ORTHO05D005961 1.9e-175 620.9 992 39.3
Duzib248G0683 Durio zibethinus HOM05D004959 ORTHO05D005961 1.3e-174 618.2 1111 36.2
Carub.0007s2107 Capsella rubella HOM05D004959 ORTHO05D005961 2.8e-174 617.1 1171 33.7
Haze_06165 Corylus avellana HOM05D004959 ORTHO05D005961 3.1e-173 613.6 1114 37.1
CARHR226870 Cardamine hirsuta HOM05D004959 ORTHO05D005961 4.0e-173 613.2 1172 34.4
Phvul.004G026300 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 3.8e-171 606.7 1172 35.6
Thhalv10024260m.g Eutrema salsugineum HOM05D004959 ORTHO05D005961 5.4e-170 602.8 1170 34.2
VMungo0464G0163 Vigna mungo HOM05D004959 ORTHO05D005961 1.2e-169 601.7 1176 34.9
TAR622G1187 Trochodendron aralioides HOM05D004959 ORTHO05D005961 1.0e-168 598.6 999 37.4
BolC1t01373H Brassica oleracea HOM05D004959 ORTHO05D005961 1.6e-166 591.3 1165 34.0
AUR62012329 Chenopodium quinoa HOM05D004959 ORTHO05D005961 1.4e-165 588.2 1167 34.7
Sp7g18520 Schrenkiella parvula HOM05D004959 ORTHO05D005961 2.4e-165 587.4 1174 33.5
BraA01t01128Z Brassica rapa HOM05D004959 ORTHO05D005961 3.4e-164 583.6 1168 33.2
HanXRQChr04g0121291 Helianthus annuus HOM05D004959 ORTHO05D005961 1.7e-163 581.3 1124 35.1
AUR62022971 Chenopodium quinoa HOM05D004959 ORTHO05D005961 2.9e-163 580.5 1164 34.7
C01p14060 Brassica napus HOM05D004959 ORTHO05D005961 6.4e-163 579.3 1166 33.5
BcaNung06192 Brassica carinata HOM05D004959 ORTHO05D005961 2.4e-162 577.4 1170 33.6
MD16G1229900 Malus domestica HOM05D004959 ORTHO05D005961 9.3e-162 575.5 1053 36.5
Aa31LG6G2470 Aethionema arabicum HOM05D004959 ORTHO05D005961 1.3e-158 565.1 1168 32.4
ATR0037G053 Amborella trichopoda HOM05D004959 ORTHO05D005961 2.2e-155 554.3 1223 32.8
Ah.09g226960 Amaranthus hybridus HOM05D004959 ORTHO05D005961 6.5e-155 552.7 1167 33.8
A01p11860 Brassica napus HOM05D004959 ORTHO05D005961 3.5e-153 547.0 1168 32.1
HPP92_024644 Vanilla planifolia HOM05D004959 ORTHO05D005961 7.6e-148 529.3 1223 31.5
CSS0032692 Camellia sinensis var. sinensis HOM05D004959 ORTHO05D005961 1.1e-146 525.4 921 36.6
Atru.chr8.666 Acer truncatum HOM05D004959 ORTHO05D005961 3.1e-141 507.3 950 35.6
Aqoxy7G01840 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 1.6e-137 495.0 995 35.2
Ciclev10014195m.g Citrus clementina HOM05D004959 ORTHO05D005961 3.1e-133 480.7 922 33.7
SEGI_31831 Sequoiadendron giganteum HOM05D004959 ORTHO05D005961 1.3e-126 458.8 1267 29.0
Peaxi162Scf00449g00321 Petunia axillaris HOM05D004959 ORTHO05D005961 2.0e-124 451.4 274 86.1
Glyma.13G054500 Glycine max HOM05D004959 ORTHO05D005961 7.5e-119 433.0 973 33.1
Hma1.2p1_0286F.1_g114200 Hydrangea macrophylla HOM05D004959 ORTHO05D005961 3.7e-118 430.6 676 39.6
Zm00001eb126950 Zea mays HOM05D004959 ORTHO05D005961 1.8e-117 428.3 1247 27.7
Pp3c21_2460 Physcomitrium patens HOM05D004959 ORTHO05D005961 5.0e-91 340.5 1299 26.2
Oeu021362.1 Olea europaea HOM05D004959 ORTHO05D005961 3.1e-88 331.3 432 41.9
Mapoly0306s0002 Marchantia polymorpha HOM05D004959 ORTHO05D005961 4.3e-82 310.8 1273 25.4
Lalb_Chr19g0135221 Lupinus albus HOM05D004959 ORTHO05D005961 8.1e-81 306.6 310 50.6
SHI28141 Sapria himalayana HOM05D004959 ORTHO05D005961 1.3e-78 299.3 894 28.1
unitig_46.g18488 Utricularia gibba HOM05D004959 ORTHO05D005961 2.2e-78 298.5 1167 25.8
LjContig00564g0005645 Lotus japonicus HOM05D004959 ORTHO05D005961 4.3e-74 284.3 320 49.1
LjContig00564g0002415 Lotus japonicus HOM05D004959 ORTHO05D005961 4.7e-73 280.8 320 48.8
Medtr4g078330 Medicago truncatula HOM05D004959 ORTHO05D005961 8.1e-73 280.0 320 48.8
Psat7g167160 Pisum sativum HOM05D004959 ORTHO05D005961 3.1e-72 278.1 320 48.1
Ca_18944_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 8.9e-72 276.6 320 46.6
PSO161G0046 Papaver somniferum HOM05D004959 ORTHO05D005961 3.2e-69 268.1 805 28.2
arahy.Tifrunner.gnm1.ann1.WXF40H Arachis hypogaea HOM05D004959 ORTHO05D005961 2.0e-63 248.8 314 43.3
CSS0018526 Camellia sinensis var. sinensis HOM05D004959 ORTHO05D005961 4.4e-63 247.7 228 54.4
Lj3g0004583 Lotus japonicus HOM05D004959 ORTHO05D005961 4.4e-63 247.7 302 46.0
arahy.Tifrunner.gnm1.ann1.C6XSUD Arachis hypogaea HOM05D004959 ORTHO05D005961 1.7e-62 245.7 314 43.3
CDE04G0396 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 1.2e-60 239.6 234 53.0
SMO111G0127 Selaginella moellendorffii HOM05D004959 ORTHO05D005961 1.2e-60 239.6 979 25.8
AagrBONN_evm.TU.Sc2ySwM_228.5373 Anthoceros agrestis HOM05D004959 ORTHO05D005961 5.3e-56 224.2 1086 24.3
BcaB03g11657 Brassica carinata HOM05D004959 ORTHO05D005961 1.9e-53 215.7 354 38.4
PSO478G4754 Papaver somniferum HOM05D004959 ORTHO05D005961 4.2e-53 214.5 193 56.0
Atru.chr8.667 Acer truncatum HOM05D004959 ORTHO05D005961 1.3e-49 203.0 176 56.8
CDE04G1301 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 1.3e-49 203.0 421 33.7
LjContig00564g0005363 Lotus japonicus HOM05D004959 ORTHO05D005961 1.2e-47 196.4 176 56.2
Phvul.005G124450 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 7.9e-44 183.7 176 54.0
SHI28139 Sapria himalayana HOM05D004959 ORTHO05D005961 3.9e-43 181.4 176 52.3
TPR.G23000 Trifolium pratense HOM05D004959 ORTHO05D005961 8.2e-41 173.7 169 53.8
BcaNung06193 Brassica carinata HOM05D004959 ORTHO05D005961 2.0e-39 169.1 188 46.8
CBR_g16049 Chara braunii HOM05D004959 ORTHO05D005961 1.2e-31 143.3 358 29.3
Os01g0188200 Oryza sativa ssp. japonica HOM05D004959 ORTHO05D005961 1.6e-28 132.9 260 34.2
Psat2g088000 Pisum sativum HOM05D004959 ORTHO05D005961 4.8e-25 121.3 153 47.1
CDE04G2317 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 5.9e-23 114.4 438 27.4
Phvul.005G124551 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 2.7e-20 105.5 282 30.1
Atru.chr10.384 Acer truncatum HOM05D004959 ORTHO05D005961 8.8e-19 100.5 224 29.9
Aqoxy5G03191 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 6.3e-17 94.4 492 24.6
Ca_14573_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 4.5e-15 88.2 125 38.4
TPR.G940 Trifolium pratense HOM05D004959 ORTHO05D005961 2.5e-13 82.4 111 42.3
Ca_14572_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 5.5e-13 81.3 127 36.2
Aqoxy5G03189 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 2.3e-11 75.9 219 27.9
Ca_14567_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 1.1e-08 67.0 88 40.9
C03p82750 Brassica napus HOM05D000005 ORTHO05D000449 1.8e-08 66.2 79 48.1
BolC3t20557H Brassica oleracea HOM05D000005 ORTHO05D000449 3.1e-08 65.5 78 48.7
SHI28140 Sapria himalayana HOM05D004959 ORTHO05D005961 9.1e-08 63.9 64 53.1
BcaC01g00652 Brassica carinata HOM05D004959 ORTHO05D005961 1.6e-07 63.2 46 58.7
BolC3t20554H Brassica oleracea HOM05D004959 ORTHO05D005961 1.6e-07 63.2 50 54.0
C03p82730 Brassica napus HOM05D004959 ORTHO05D005961 3.5e-07 62.0 46 56.5
Os01g0103700 Oryza sativa ssp. japonica HOM05D004959 ORTHO05D005961 7.7e-07 60.8 107 37.4


User provided reference genes

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