Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g062120.3 Solanum lycopersicum HOM05D003593 ORTHO05D004064 1.5e-69 266.2 142 100.0
Sopen02g018530 Solanum pennellii HOM05D003593 ORTHO05D004064 1.1e-37 160.2 215 51.2
Peaxi162Scf00074g00739 Petunia axillaris HOM05D003593 ORTHO05D004064 9.7e-37 157.1 175 56.6
Sopen02g013070 Solanum pennellii HOM05D003593 ORTHO05D004064 3.7e-36 155.2 195 51.3
Nitab4.5_0010661g0020 Nicotiana tabacum HOM05D003593 ORTHO05D004064 4.8e-36 154.8 210 50.0
Solyc02g069380.3 Solanum lycopersicum HOM05D003593 ORTHO05D004064 9.1e-35 150.6 211 50.2
CAN.G1497.5 Capsicum annuum HOM05D003593 ORTHO05D004064 2.0e-34 149.4 211 49.3
Peaxi162Scf00195g00123 Petunia axillaris HOM05D003593 ORTHO05D004064 1.7e-33 146.4 208 48.6
CAN.G675.9 Capsicum annuum HOM05D003593 ORTHO05D004064 2.9e-33 145.6 211 48.3
CSS0033341 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 2.8e-28 129.0 191 45.5
CSS0039493 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 2.8e-28 129.0 191 45.5
SalBow4G0244 Salvia bowleyana HOM05D003593 ORTHO05D004064 2.8e-28 129.0 198 47.0
Migut.D00405 Erythranthe guttata HOM05D003593 ORTHO05D004064 8.2e-28 127.5 211 43.1
Lj1C63T22 Lonicera japonica HOM05D003593 ORTHO05D004064 1.4e-27 126.7 206 44.2
Peaxi162Scf00956g00310 Petunia axillaris HOM05D003593 ORTHO05D004064 2.4e-27 125.9 207 43.5
Aqoxy5G03192 Aquilegia oxysepala HOM05D003593 ORTHO05D004064 2.0e-26 122.9 135 56.3
Dinv34117 Davidia involucrata HOM05D003593 ORTHO05D004064 1.0e-25 120.6 206 39.8
Duzib068G0242 Durio zibethinus HOM05D003593 ORTHO05D004064 1.3e-25 120.2 202 41.1
PGR142G0083 Punica granatum HOM05D003593 ORTHO05D004064 1.1e-24 117.1 213 39.9
MSTRG.21503 Avicennia marina HOM05D003593 ORTHO05D004064 1.9e-24 116.3 210 40.0
CiPaw.07G199700 Carya illinoinensis HOM05D003593 ORTHO05D004064 1.9e-24 116.3 210 39.0
Manes.03G101800 Manihot esculenta HOM05D003593 ORTHO05D004064 1.9e-24 116.3 210 39.5
Rhsim01G0049400 Rhododendron simsii HOM05D003593 ORTHO05D004064 1.9e-24 116.3 212 39.6
MBI16_g31002_MAGBIO Magnolia biondii HOM05D003593 ORTHO05D004064 2.5e-24 115.9 202 39.1
Actinidia21188 Actinidia chinensis HOM05D003593 ORTHO05D004064 3.2e-24 115.5 209 39.7
Atru.chr1.1670 Acer truncatum HOM05D003593 ORTHO05D004064 4.2e-24 115.2 213 39.0
Nn8g40907 Nelumbo nucifera HOM05D003593 ORTHO05D004064 5.5e-24 114.8 197 39.6
MBI14_g31143_MAGBIO Magnolia biondii HOM05D003593 ORTHO05D004064 7.2e-24 114.4 213 40.8
AUR62035376 Chenopodium quinoa HOM05D003593 ORTHO05D004064 9.4e-24 114.0 206 38.8
Prupe.1G071200 Prunus persica HOM05D003593 ORTHO05D004064 9.4e-24 114.0 210 38.6
Rhsim01G0266500 Rhododendron simsii HOM05D003593 ORTHO05D004064 9.4e-24 114.0 212 39.6
MD13G1238800 Malus domestica HOM05D003593 ORTHO05D004064 1.6e-23 113.2 211 38.4
Thecc.09G252700 Theobroma cacao HOM05D003593 ORTHO05D004064 1.6e-23 113.2 206 40.8
CiPaw.08G030900 Carya illinoinensis HOM05D003593 ORTHO05D004064 2.1e-23 112.8 210 37.6
Ciclev10032601m.g Citrus clementina HOM05D003593 ORTHO05D004064 2.1e-23 112.8 212 38.2
AUR62029320 Chenopodium quinoa HOM05D003593 ORTHO05D004064 2.7e-23 112.5 204 38.7
Cc07_g18270 Coffea canephora HOM05D003593 ORTHO05D004064 3.6e-23 112.1 211 38.4
Ciclev10021956m.g Citrus clementina HOM05D003593 ORTHO05D004064 4.7e-23 111.7 212 38.2
COL.COLO4_13717 Corchorus olitorius HOM05D003593 ORTHO05D004064 4.7e-23 111.7 212 38.7
FvH4_2g10880 Fragaria vesca HOM05D003593 ORTHO05D004064 8.0e-23 110.9 213 36.6
TWI39G0804 Tripterygium wilfordii HOM05D003593 ORTHO05D004064 8.0e-23 110.9 212 38.2
FAN15G1423 Fragaria x ananassa HOM05D003593 ORTHO05D004064 1.4e-22 110.2 213 36.6
FAN20G0230 Fragaria x ananassa HOM05D003593 ORTHO05D004064 1.4e-22 110.2 213 36.6
RcHm_v2.0_Chr6g0268981 Rosa chinensis HOM05D003593 ORTHO05D004064 1.4e-22 110.2 213 36.6
A09p48590 Brassica napus HOM05D003593 ORTHO05D004064 1.8e-22 109.8 209 38.8
BraA09t40311Z Brassica rapa HOM05D003593 ORTHO05D004064 1.8e-22 109.8 209 38.8
Thhalv10010672m.g Eutrema salsugineum HOM05D003593 ORTHO05D004064 2.3e-22 109.4 211 38.4
RcHm_v2.0_Chr5g0056791 Rosa chinensis HOM05D003593 ORTHO05D004064 2.3e-22 109.4 213 36.6
BolC8t50717H Brassica oleracea HOM05D003593 ORTHO05D004064 3.0e-22 109.0 211 38.9
HanXRQChr04g0113781 Helianthus annuus HOM05D003593 ORTHO05D004064 4.0e-22 108.6 212 39.6
BcaC07g39887 Brassica carinata HOM05D002600 ORTHO05D003013 5.2e-22 108.2 211 38.4
ECA236G3417 Erigeron canadensis HOM05D003593 ORTHO05D004064 5.2e-22 108.2 212 38.2
THA.LOC104810051 Tarenaya hassleriana HOM05D003593 ORTHO05D004064 5.2e-22 108.2 211 38.4
GSVIVG01033604001 Vitis vinifera HOM05D003593 ORTHO05D004064 5.2e-22 108.2 206 36.9
Nitab4.5_0000630g0070 Nicotiana tabacum HOM05D003593 ORTHO05D004064 6.8e-22 107.8 70 81.4
C08p30920 Brassica napus HOM05D003593 ORTHO05D004064 8.8e-22 107.5 213 38.0
Aa31LG5G19840 Aethionema arabicum HOM05D003593 ORTHO05D004064 1.2e-21 107.1 214 36.9
Carub.0003s3082 Capsella rubella HOM05D003593 ORTHO05D004064 1.2e-21 107.1 211 37.9
Cfa013477 Carpinus fangiana HOM05D003593 ORTHO05D004064 1.2e-21 107.1 211 36.0
Zm00001eb252050 Zea mays HOM05D003593 ORTHO05D004064 1.2e-21 107.1 203 37.9
PSO782G1623 Papaver somniferum HOM05D003593 ORTHO05D004064 1.5e-21 106.7 209 38.8
Phvul.003G138700 Phaseolus vulgaris HOM05D003593 ORTHO05D004064 1.5e-21 106.7 212 38.7
Sp1g35080 Schrenkiella parvula HOM05D003593 ORTHO05D004064 1.5e-21 106.7 208 38.5
GSVIVG01025934001 Vitis vinifera HOM05D003593 ORTHO05D004064 1.5e-21 106.7 206 36.4
AT3G55600 Arabidopsis thaliana HOM05D003593 ORTHO05D004064 2.0e-21 106.3 211 37.9
arahy.Tifrunner.gnm1.ann1.PB4QPE Arachis hypogaea HOM05D003593 ORTHO05D004064 2.0e-21 106.3 213 38.5
PSO063G1703 Papaver somniferum HOM05D003593 ORTHO05D004064 2.0e-21 106.3 209 38.8
Sabra18G0113300 Salix brachista HOM05D003593 ORTHO05D004064 2.0e-21 106.3 211 37.0
arahy.Tifrunner.gnm1.ann1.HDC0J8 Arachis hypogaea HOM05D003593 ORTHO05D004064 2.6e-21 105.9 213 38.5
Phvul.003G138826 Phaseolus vulgaris HOM05D003593 ORTHO05D004064 2.6e-21 105.9 212 38.7
Phvul.003G139226 Phaseolus vulgaris HOM05D003593 ORTHO05D004064 2.6e-21 105.9 212 38.7
Eucgr.F03860 Eucalyptus grandis HOM05D003593 ORTHO05D004064 3.4e-21 105.5 215 38.1
CARHR165650 Cardamine hirsuta HOM05D003593 ORTHO05D004064 4.4e-21 105.1 211 37.4
Gohir.D10G156600 Gossypium hirsutum HOM05D003593 ORTHO05D004064 4.4e-21 105.1 211 36.0
Gorai.011G174800 Gossypium raimondii HOM05D003593 ORTHO05D004064 4.4e-21 105.1 211 36.0
FAN24G3005 Fragaria x ananassa HOM05D003593 ORTHO05D004064 5.7e-21 104.8 220 33.6
Potri.018G133700 Populus trichocarpa HOM05D003593 ORTHO05D004064 5.7e-21 104.8 211 37.0
Zm00001eb036800 Zea mays HOM05D003593 ORTHO05D004064 5.7e-21 104.8 203 36.5
Glyma.13G102300 Glycine max HOM05D003593 ORTHO05D004064 9.8e-21 104.0 212 38.7
Lj4g0003900 Lotus japonicus HOM05D003593 ORTHO05D004064 9.8e-21 104.0 210 38.6
Sc03g0009620 Simmondsia chinensis HOM05D003593 ORTHO05D004064 9.8e-21 104.0 214 36.4
AL5G36800 Arabidopsis lyrata HOM05D003593 ORTHO05D004064 1.3e-20 103.6 211 37.4
EL10Ac5g11509 Beta vulgaris HOM05D003593 ORTHO05D004064 1.7e-20 103.2 204 37.3
Os08g0533700 Oryza sativa ssp. japonica HOM05D003593 ORTHO05D004064 1.7e-20 103.2 210 36.7
QL03p003697 Quercus lobata HOM05D003593 ORTHO05D004064 1.7e-20 103.2 213 37.1
Medtr8g027710 Medicago truncatula HOM05D003593 ORTHO05D004064 2.2e-20 102.8 209 37.3
TPR.G16420 Trifolium pratense HOM05D003593 ORTHO05D004064 2.2e-20 102.8 210 37.1
Ca_21268_v3 Cicer arietinum L. HOM05D003593 ORTHO05D004064 2.8e-20 102.4 211 37.0
Thhalv10011761m.g Eutrema salsugineum HOM05D003593 ORTHO05D004064 2.8e-20 102.4 192 37.5
SGA_v2.0_scaffold10G05150 Striga asiatica HOM05D003593 ORTHO05D004064 2.8e-20 102.4 248 35.1
THA.LOC104810053 Tarenaya hassleriana HOM05D003593 ORTHO05D004064 3.7e-20 102.1 211 37.4
TPR.G5405 Trifolium pratense HOM05D003593 ORTHO05D004064 3.7e-20 102.1 210 37.1
VMungo1215G1259 Vigna mungo HOM05D003593 ORTHO05D004064 3.7e-20 102.1 212 37.7
Gohir.A10G111600 Gossypium hirsutum HOM05D003593 ORTHO05D004064 6.3e-20 101.3 211 35.1
Medtr4g126960 Medicago truncatula HOM05D003593 ORTHO05D004064 6.3e-20 101.3 209 36.8
CANSAT01G0027 Cannabis sativa HOM05D003593 ORTHO05D004064 3.1e-19 99.0 206 35.4
Glyma.14G032100 Glycine max HOM05D003593 ORTHO05D004064 3.1e-19 99.0 212 37.7
Hund02205 Selenicereus undatus HOM05D003593 ORTHO05D004064 3.1e-19 99.0 204 36.3
ClCG06G013760 Citrullus lanatus HOM05D003593 ORTHO05D004064 4.1e-19 98.6 216 35.2
unitig_22.g5286 Utricularia gibba HOM05D003593 ORTHO05D004064 5.4e-19 98.2 211 36.0
AT1G54110 Arabidopsis thaliana HOM05D003593 ORTHO05D004064 9.1e-19 97.4 208 36.1
Oeu035605.1 Olea europaea HOM05D003593 ORTHO05D004064 9.1e-19 97.4 197 36.5
MBI16_g41745_MAGBIO Magnolia biondii HOM05D003593 ORTHO05D004064 1.2e-18 97.1 75 70.7
GSVIVG01029263001 Vitis vinifera HOM05D003593 ORTHO05D004064 1.2e-18 97.1 70 70.0
Nitab4.5_0005797g0010 Nicotiana tabacum HOM05D003593 ORTHO05D004064 2.0e-18 96.3 213 38.5
ATR0580G077 Amborella trichopoda HOM05D003593 ORTHO05D004064 2.7e-18 95.9 208 36.5
Aqoxy5G00845 Aquilegia oxysepala HOM05D003593 ORTHO05D004064 2.7e-18 95.9 70 70.0
MSTRG.18306 Avicennia marina HOM05D003593 ORTHO05D004064 2.7e-18 95.9 212 36.3
CSS0014982 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 2.7e-18 95.9 63 77.8
HanXRQChr10g0281101 Helianthus annuus HOM05D003593 ORTHO05D004064 3.5e-18 95.5 218 34.9
Lsat_1_v5_gn_8_91320 Lactuca sativa HOM05D003593 ORTHO05D004064 3.5e-18 95.5 213 35.2
QL02p059634 Quercus lobata HOM05D003593 ORTHO05D004064 3.5e-18 95.5 241 33.2
CsaV3_3G012080 Cucumis sativus L. HOM05D003593 ORTHO05D004064 5.9e-18 94.7 213 34.7
Rhsim08G0153900 Rhododendron simsii HOM05D003593 ORTHO05D004064 2.9e-17 92.4 75 66.7
PSO170G4544 Papaver somniferum HOM05D003593 ORTHO05D004064 8.6e-17 90.9 70 65.7
Oeu048106.1 Olea europaea HOM05D003593 ORTHO05D004064 2.5e-16 89.4 70 67.1
Ah.04g164950 Amaranthus hybridus HOM05D003593 ORTHO05D004064 9.5e-16 87.4 256 29.7
AL6G40520 Arabidopsis lyrata HOM05D003593 ORTHO05D004064 9.5e-16 87.4 198 34.8
MBI16_g09339_MAGBIO Magnolia biondii HOM05D003593 ORTHO05D004064 9.5e-16 87.4 70 61.4
Prupe.2G148000 Prunus persica HOM05D003593 ORTHO05D004064 9.5e-16 87.4 75 64.0
Sp5g06880 Schrenkiella parvula HOM05D003593 ORTHO05D004064 9.5e-16 87.4 75 65.3
C08p30910 Brassica napus HOM05D003593 ORTHO05D004064 3.6e-15 85.5 126 44.4
BcaB01g00076 Brassica carinata HOM05D003593 ORTHO05D004064 4.7e-15 85.1 75 62.7
SEGI_30783 Sequoiadendron giganteum HOM05D003593 ORTHO05D004064 4.7e-15 85.1 75 62.7
SEGI_34697 Sequoiadendron giganteum HOM05D003593 ORTHO05D004064 4.7e-15 85.1 75 62.7
Cpa.g.sc103.74 Carica papaya HOM05D003593 ORTHO05D004064 6.1e-15 84.7 75 65.3
AUR62029138 Chenopodium quinoa HOM05D003593 ORTHO05D004064 6.1e-15 84.7 167 37.1
Glyma.17G056700 Glycine max HOM05D003593 ORTHO05D004064 8.0e-15 84.3 75 65.3
AL1G48760 Arabidopsis lyrata HOM05D003593 ORTHO05D004064 1.0e-14 84.0 198 33.8
CSS0019003 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 1.0e-14 84.0 63 69.8
Os09g0272500 Oryza sativa ssp. japonica HOM05D003593 ORTHO05D004064 2.3e-14 82.8 204 32.4
Manes.15G093801 Manihot esculenta HOM05D003593 ORTHO05D004064 4.0e-14 82.0 110 44.5
Lsat_1_v5_gn_9_9120 Lactuca sativa HOM05D003593 ORTHO05D004064 1.2e-13 80.5 75 60.0
MD08G1104600 Malus domestica HOM05D003593 ORTHO05D004064 1.5e-13 80.1 257 30.7
AUR62015608 Chenopodium quinoa HOM05D003593 ORTHO05D004064 3.4e-13 79.0 187 34.2
Sed0025908 Sechium edule HOM05D003593 ORTHO05D004064 5.7e-13 78.2 75 60.0
Atru.chr10.1467 Acer truncatum HOM05D003593 ORTHO05D004064 2.2e-12 76.3 78 60.3
Sed0017744 Sechium edule HOM05D003593 ORTHO05D004064 2.8e-12 75.9 75 60.0
Manes.16G049600 Manihot esculenta HOM05D003593 ORTHO05D004064 6.3e-12 74.7 202 31.7
QL03p003406 Quercus lobata HOM05D003593 ORTHO05D004064 6.3e-12 74.7 276 28.6
FvH4_6g47540 Fragaria vesca HOM05D003593 ORTHO05D004064 3.1e-11 72.4 211 32.7
DCAR_007335 Daucus carota HOM05D003593 ORTHO05D002993 4.1e-11 72.0 46 76.1
C04p36780 Brassica napus HOM05D003593 ORTHO05D004064 1.6e-10 70.1 61 59.0
Hma1.2p1_1219F.1_g267880 Hydrangea macrophylla HOM05D003593 ORTHO05D004064 2.7e-10 69.3 207 32.4
vmacro03823 Vaccinium macrocarpon HOM05D003593 ORTHO05D004064 4.5e-10 68.6 46 71.7
Haze_22054 Corylus avellana HOM05D003593 ORTHO05D004064 5.9e-10 68.2 54 64.8
SMO352G0089 Selaginella moellendorffii HOM05D003593 ORTHO05D004064 5.9e-10 68.2 66 53.0
MD16G1244000 Malus domestica HOM05D003593 ORTHO05D004064 1.0e-09 67.4 46 67.4
SMO288G0003 Selaginella moellendorffii HOM05D003593 ORTHO05D004064 1.0e-09 67.4 120 37.5
BcaC07g39889 Brassica carinata HOM05D003593 ORTHO05D004064 2.9e-09 65.9 44 70.5
Hma1.2p1_0571F.1_g180780 Hydrangea macrophylla HOM05D003593 ORTHO05D004064 2.9e-09 65.9 212 28.3
CSS0041369 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 3.8e-09 65.5 48 60.4
MD16G1244100 Malus domestica HOM05D003593 ORTHO05D004064 5.0e-09 65.1 46 71.7
Psat1g089640 Pisum sativum HOM05D003593 ORTHO05D004064 5.0e-09 65.1 43 72.1
FAN09G2587 Fragaria x ananassa HOM05D003593 ORTHO05D004064 6.6e-09 64.7 54 61.1
FAN14G2581 Fragaria x ananassa HOM05D003593 ORTHO05D004064 6.6e-09 64.7 54 61.1
Pp3c17_5110 Physcomitrium patens HOM05D003593 ORTHO05D004064 6.6e-09 64.7 75 52.0
Psat2g189400 Pisum sativum HOM05D003593 ORTHO05D004064 6.6e-09 64.7 61 54.1
FAN02G4054 Fragaria x ananassa HOM05D003593 ORTHO05D004064 1.1e-08 63.9 203 29.6
FAN09G1792 Fragaria x ananassa HOM05D003593 ORTHO05D004064 1.5e-08 63.5 213 30.5
FAN09G2125 Fragaria x ananassa HOM05D003593 ORTHO05D004064 1.5e-08 63.5 213 30.5
Lalb_Chr12g0199721 Lupinus albus HOM05D003593 ORTHO05D004064 3.3e-08 62.4 214 29.0
Thecc.10G141700 Theobroma cacao HOM05D003593 ORTHO05D004064 5.6e-08 61.6 51 60.8
AL1G62820 Arabidopsis lyrata HOM05D003593 ORTHO05D004064 9.5e-08 60.8 81 44.4
Thhalv10002036m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 9.5e-08 60.8 48 60.4
Lj2g0027873 Lotus japonicus HOM05D003593 ORTHO05D004064 1.2e-07 60.5 43 67.4
CDE06G1796 Ceratophyllum demersum HOM05D003593 ORTHO05D004064 1.6e-07 60.1 179 29.6
BolC8t50716H Brassica oleracea HOM05D003593 ORTHO05D004064 2.1e-07 59.7 41 68.3
MELO3C006423.2 Cucumis melo HOM05D003593 ORTHO05D004064 2.1e-07 59.7 54 57.4
PSO170G1127 Papaver somniferum HOM05D003593 ORTHO05D004064 4.7e-07 58.5 44 70.5
FAN05G2468 Fragaria x ananassa HOM05D003593 ORTHO05D004064 8.0e-07 57.8 203 28.6
Os02g0306100 Oryza sativa ssp. japonica HOM05D003593 ORTHO05D004064 1.0e-06 57.4 46 58.7


User provided reference genes

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