Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g061900.1 Solanum lycopersicum HOM05D008149 ORTHO05D010130 5.3e-173 610.9 305 100.0
Sopen02g013040 Solanum pennellii HOM05D008149 ORTHO05D010130 3.5e-140 501.9 372 72.6
PGSC0003DMG400023889 Solanum tuberosum HOM05D008149 ORTHO05D010130 3.8e-131 471.9 321 80.1
PGSC0003DMG400023888 Solanum tuberosum HOM05D008149 ORTHO05D010130 7.3e-106 387.9 331 67.1
Sopen02g013010 Solanum pennellii HOM05D008149 ORTHO05D010130 2.8e-105 386.0 315 68.3
PGSC0003DMG400035879 Solanum tuberosum HOM05D008149 ORTHO05D010130 1.2e-97 360.5 360 59.2
Sopen02g012890 Solanum pennellii HOM05D008149 ORTHO05D010130 4.0e-96 355.5 297 67.3
PGSC0003DMG400037967 Solanum tuberosum HOM05D008149 ORTHO05D010130 3.3e-74 282.7 302 57.0
PGSC0003DMG400045200 Solanum tuberosum HOM05D008149 ORTHO05D010130 1.3e-73 280.8 302 56.3
Sopen02g013030 Solanum pennellii HOM05D008149 ORTHO05D010130 1.2e-68 264.2 371 46.1
Solyc02g061910.1 Solanum lycopersicum HOM05D008149 ORTHO05D010130 3.3e-66 256.1 300 53.7
PGSC0003DMG400023892 Solanum tuberosum HOM05D008149 ORTHO05D010130 5.5e-61 238.8 371 45.0
CAN.G158.3 Capsicum annuum HOM05D008149 ORTHO05D010130 3.2e-53 213.0 327 43.1
Solyc02g062090.1 Solanum lycopersicum HOM05D008149 ORTHO05D010130 1.1e-50 204.5 302 45.0
Solyc02g062080.1 Solanum lycopersicum HOM05D008149 ORTHO05D010130 3.4e-47 193.0 300 44.3
Nitab4.5_0001019g0100 Nicotiana tabacum HOM05D008149 ORTHO05D010130 2.5e-42 176.8 367 36.0
Sopen02g013020 Solanum pennellii HOM05D008149 ORTHO05D010130 7.4e-42 175.3 250 44.8
Solyc02g062060.1 Solanum lycopersicum HOM05D008149 ORTHO05D010130 2.8e-41 173.3 274 43.1
Solyc02g061870.1 Solanum lycopersicum HOM05D008149 ORTHO05D010130 5.3e-40 169.1 239 43.9
PGSC0003DMG400036456 Solanum tuberosum HOM05D008149 ORTHO05D010130 9.1e-40 168.3 147 60.5
Nitab4.5_0001907g0010 Nicotiana tabacum HOM05D008149 ORTHO05D010130 3.6e-36 156.4 368 37.0
Peaxi162Scf00016g00168 Petunia axillaris HOM05D008149 ORTHO05D010130 5.7e-34 149.1 305 38.7
Solyc02g062070.2 Solanum lycopersicum HOM05D008149 ORTHO05D010130 2.8e-33 146.7 279 40.5
Peaxi162Scf00493g00439 Petunia axillaris HOM05D008149 ORTHO05D010130 3.7e-33 146.4 174 50.0
Peaxi162Scf00650g00014 Petunia axillaris HOM05D008149 ORTHO05D010130 1.1e-32 144.8 334 36.2
CAN.G308.65 Capsicum annuum HOM05D008149 ORTHO05D010130 1.5e-31 141.0 151 49.0
Nitab4.5_0009705g0040 Nicotiana tabacum HOM05D008149 ORTHO05D010130 2.1e-28 130.6 138 52.9
Solyc04g025760.1 Solanum lycopersicum HOM05D008149 ORTHO05D010130 8.0e-28 128.6 178 41.0
Peaxi162Scf00066g00145 Petunia axillaris HOM05D008149 ORTHO05D010130 1.8e-27 127.5 193 45.1
Nitab4.5_0013476g0020 Nicotiana tabacum HOM05D008149 ORTHO05D010130 3.9e-27 126.3 139 51.8
Nitab4.5_0001896g0010 Nicotiana tabacum HOM05D008149 ORTHO05D010130 1.3e-25 121.3 151 47.0
Nitab4.5_0001874g0070 Nicotiana tabacum HOM05D008149 ORTHO05D010130 2.2e-25 120.6 313 32.3
Nitab4.5_0000608g0100 Nicotiana tabacum HOM05D008149 ORTHO05D010130 2.8e-25 120.2 192 40.1
PGSC0003DMG400040065 Solanum tuberosum HOM05D008149 ORTHO05D010130 4.8e-25 119.4 165 41.2
Peaxi162Scf00245g00112 Petunia axillaris HOM05D017006 ORTHO05D010130 1.1e-24 118.2 166 46.4
CAN.G1485.2 Capsicum annuum HOM05D008149 ORTHO05D010130 4.1e-24 116.3 113 55.8
CAN.G641.1 Capsicum annuum HOM05D008149 ORTHO05D010130 5.3e-24 115.9 153 43.1
CAN.G641.16 Capsicum annuum HOM05D008149 ORTHO05D010130 5.3e-24 115.9 153 43.1
Nitab4.5_0010957g0020 Nicotiana tabacum HOM05D008149 ORTHO05D010130 5.3e-24 115.9 157 44.6
Nitab4.5_0003562g0020 Nicotiana tabacum HOM05D008149 ORTHO05D010130 7.0e-24 115.5 203 36.9
Nitab4.5_0000082g0040 Nicotiana tabacum HOM05D008149 ORTHO05D010130 1.2e-23 114.8 195 38.5
Peaxi162Scf01324g00211 Petunia axillaris HOM05D017006 ORTHO05D010130 2.0e-23 114.0 199 40.7
Peaxi162Scf01324g00212 Petunia axillaris HOM05D017006 ORTHO05D010130 2.0e-23 114.0 199 40.7
Peaxi162Scf01780g00003 Petunia axillaris HOM05D017006 ORTHO05D010130 2.0e-23 114.0 199 40.7
PGSC0003DMG400042894 Solanum tuberosum HOM05D008149 ORTHO05D010130 2.9e-22 110.2 193 36.8
CAN.G1095.3 Capsicum annuum HOM05D000069 ORTHO05D010130 1.9e-21 107.5 146 41.8
CAN.G569.40 Capsicum annuum HOM05D008149 ORTHO05D010130 4.2e-21 106.3 159 42.1
Solyc02g062210.3 Solanum lycopersicum HOM05D008149 ORTHO05D010130 9.4e-21 105.1 265 32.5
PGSC0003DMG400008178 Solanum tuberosum HOM05D008149 ORTHO05D010130 2.7e-20 103.6 168 41.7
Sopen10g029870 Solanum pennellii HOM05D008149 ORTHO05D010130 1.4e-19 101.3 165 40.0
Peaxi162Scf00245g01014 Petunia axillaris HOM05D017006 ORTHO05D010130 1.8e-19 100.9 243 33.3
Sopen00g013830 Solanum pennellii HOM05D008149 ORTHO05D010130 4.0e-19 99.8 139 40.3
Sopen02g012300 Solanum pennellii HOM05D010460 ORTHO05D010130 4.0e-19 99.8 139 40.3
CAN.G1612.2 Capsicum annuum HOM05D008149 ORTHO05D010130 3.3e-18 96.7 130 42.3
Solyc10g079220.2 Solanum lycopersicum HOM05D008149 ORTHO05D010130 4.4e-18 96.3 155 40.0
Sopen10g022760 Solanum pennellii HOM05D000002 ORTHO05D000001 1.3e-17 94.7 155 39.4
Peaxi162Scf00108g00028 Petunia axillaris HOM05D008149 ORTHO05D010130 1.7e-17 94.4 248 33.5
PGSC0003DMG400008147 Solanum tuberosum HOM05D008149 ORTHO05D010130 3.7e-17 93.2 168 39.3
PGSC0003DMG400008179 Solanum tuberosum HOM05D008149 ORTHO05D010130 1.1e-16 91.7 122 48.4
PGSC0003DMG400042869 Solanum tuberosum HOM05D008149 ORTHO05D010130 3.1e-16 90.1 115 50.4
CAN.G641.11 Capsicum annuum HOM05D008149 ORTHO05D010130 2.0e-15 87.4 254 29.9
Peaxi162Scf01327g00121 Petunia axillaris HOM05D003646 ORTHO05D004503 6.5e-14 82.4 178 34.3
PGSC0003DMG400007065 Solanum tuberosum HOM05D008050 ORTHO05D003796 1.5e-13 81.3 146 34.9
Peaxi162Scf00692g00052 Petunia axillaris HOM05D010426 ORTHO05D003796 1.9e-13 80.9 178 34.3
Peaxi162Scf00027g00162 Petunia axillaris HOM05D010426 ORTHO05D003796 4.2e-13 79.7 171 34.5
Peaxi162Scf00245g00118 Petunia axillaris HOM05D008149 ORTHO05D010130 9.4e-13 78.6 93 51.6
Peaxi162Scf00111g00145 Petunia axillaris HOM05D008050 ORTHO05D003796 1.8e-11 74.3 166 33.1
Solyc03g062670.1 Solanum lycopersicum HOM05D008050 ORTHO05D003796 2.3e-11 73.9 173 32.9
Sopen03g014990 Solanum pennellii HOM05D008050 ORTHO05D003796 2.3e-11 73.9 173 32.9
COL.COLO4_18802 Corchorus olitorius HOM05D002630 ORTHO05D000952 5.2e-11 72.8 134 31.3
Dinv05036 Davidia involucrata HOM05D002630 ORTHO05D000952 5.2e-11 72.8 171 31.6
PGSC0003DMG400039478 Solanum tuberosum HOM05D008050 ORTHO05D003796 5.2e-11 72.8 179 31.8
PGSC0003DMG400047167 Solanum tuberosum HOM05D008050 ORTHO05D003796 2.0e-10 70.9 175 29.7
Nitab4.5_0001745g0030 Nicotiana tabacum HOM05D008050 ORTHO05D003796 4.4e-10 69.7 156 27.6
Solyc07g062240.1 Solanum lycopersicum HOM05D007636 ORTHO05D000952 5.7e-10 69.3 143 31.5
Nitab4.5_0010159g0010 Nicotiana tabacum HOM05D008050 ORTHO05D003796 7.5e-10 68.9 157 28.7
Nitab4.5_0023007g0010 Nicotiana tabacum HOM05D008050 ORTHO05D003796 1.3e-09 68.2 273 24.5
Nitab4.5_0000499g0070 Nicotiana tabacum HOM05D008050 ORTHO05D003796 2.2e-09 67.4 209 24.9
Peaxi162Scf00397g00112 Petunia axillaris HOM05D009491 ORTHO05D003796 2.2e-09 67.4 195 27.7
Peaxi162Scf37870g00003 Petunia axillaris HOM05D009491 ORTHO05D003796 2.2e-09 67.4 195 27.7
Sopen07g030510 Solanum pennellii HOM05D002099 ORTHO05D002080 3.7e-09 66.6 117 33.3
CAN.G375.39 Capsicum annuum HOM05D007636 ORTHO05D003796 4.8e-09 66.2 141 34.0
Thecc.05G051100 Theobroma cacao HOM05D000010 ORTHO05D000952 4.8e-09 66.2 119 36.1
Actinidia18621 Actinidia chinensis HOM05D007636 ORTHO05D000952 6.3e-09 65.9 188 29.8
Nitab4.5_0001968g0100 Nicotiana tabacum HOM05D008149 ORTHO05D010130 6.3e-09 65.9 135 34.8
Peaxi162Scf00397g00022 Petunia axillaris HOM05D008050 ORTHO05D003796 6.3e-09 65.9 175 26.9
Sopen03g033360 Solanum pennellii HOM05D003268 ORTHO05D003796 8.3e-09 65.5 170 29.4
Prupe.4G154000 Prunus persica HOM05D002630 ORTHO05D000952 1.4e-08 64.7 210 30.0
Sopen03g015050 Solanum pennellii HOM05D008050 ORTHO05D003796 1.8e-08 64.3 176 30.7
PGSC0003DMG400038867 Solanum tuberosum HOM05D009491 ORTHO05D003796 1.8e-08 64.3 144 30.6
PGSC0003DMG400045663 Solanum tuberosum HOM05D008050 ORTHO05D003796 1.8e-08 64.3 175 29.7
PGSC0003DMG400046943 Solanum tuberosum HOM05D008050 ORTHO05D003796 1.8e-08 64.3 177 29.4
SGA_v2.0_scaffold467G52042 Striga asiatica HOM05D007636 ORTHO05D003796 1.8e-08 64.3 175 26.3
Actinidia18619 Actinidia chinensis HOM05D002630 ORTHO05D000952 3.1e-08 63.5 118 35.6
Actinidia31546 Actinidia chinensis HOM05D002630 ORTHO05D000952 3.1e-08 63.5 118 36.4
Actinidia00474 Actinidia chinensis HOM05D007636 ORTHO05D000952 4.1e-08 63.2 121 37.2
Peaxi162Scf00017g00243 Petunia axillaris HOM05D008050 ORTHO05D003796 4.1e-08 63.2 183 26.8
MD00G1154700 Malus domestica HOM05D002630 ORTHO05D000952 7.0e-08 62.4 135 33.3
MD00G1154800 Malus domestica HOM05D002630 ORTHO05D000952 7.0e-08 62.4 135 33.3
MD03G1255000 Malus domestica HOM05D002630 ORTHO05D000952 7.0e-08 62.4 135 33.3
MD03G1255200 Malus domestica HOM05D002630 ORTHO05D000952 7.0e-08 62.4 135 33.3
MD03G1255300 Malus domestica HOM05D002630 ORTHO05D000952 7.0e-08 62.4 135 33.3
PGSC0003DMG400040550 Solanum tuberosum HOM05D008050 ORTHO05D003796 1.2e-07 61.6 175 29.1
FvH4_6g39600 Fragaria vesca HOM05D002630 ORTHO05D000952 1.6e-07 61.2 176 29.5
Peaxi162Scf00493g00414 Petunia axillaris HOM05D017006 ORTHO05D010130 1.6e-07 61.2 116 36.2
Solyc03g114260.1 Solanum lycopersicum HOM05D008050 ORTHO05D003796 1.6e-07 61.2 240 25.8
PGSC0003DMG400023887 Solanum tuberosum HOM05D008149 ORTHO05D010130 1.6e-07 61.2 141 40.4
FAN02G4413 Fragaria x ananassa HOM05D002630 ORTHO05D000952 2.0e-07 60.8 157 31.8
MD03G1255100 Malus domestica HOM05D002630 ORTHO05D000952 2.0e-07 60.8 135 32.6
Peaxi162Scf00245g01210 Petunia axillaris HOM05D017006 ORTHO05D010130 2.0e-07 60.8 185 31.4
Aqoxy4G01883 Aquilegia oxysepala HOM05D000010 ORTHO05D014820 2.7e-07 60.5 156 30.8
CAN.G853.22 Capsicum annuum HOM05D008050 ORTHO05D003796 3.5e-07 60.1 164 25.6
COL.COLO4_35915 Corchorus olitorius HOM05D000010 ORTHO05D158817 5.9e-07 59.3 149 32.9
RcHm_v2.0_Chr7g0211251 Rosa chinensis HOM05D002630 ORTHO05D000952 5.9e-07 59.3 127 34.6
Solyc03g059300.1 Solanum lycopersicum HOM05D008050 ORTHO05D003796 5.9e-07 59.3 169 29.0
FAN07G2769 Fragaria x ananassa HOM05D002630 ORTHO05D000952 7.7e-07 58.9 160 31.2
MD00G1155000 Malus domestica HOM05D002630 ORTHO05D000952 7.7e-07 58.9 135 31.9
TWI14G0387 Tripterygium wilfordii HOM05D000010 ORTHO05D000063 7.7e-07 58.9 188 30.3
FvH4_3g18930 Fragaria vesca HOM05D002630 ORTHO05D000952 1.3e-06 58.2 161 30.4
FAN02G1492 Fragaria x ananassa HOM05D002630 ORTHO05D000952 1.3e-06 58.2 125 34.4
FAN09G2675 Fragaria x ananassa HOM05D002630 ORTHO05D000952 1.3e-06 58.2 128 32.8
FAN11G3152 Fragaria x ananassa HOM05D002630 ORTHO05D000952 1.3e-06 58.2 161 30.4
Nitab4.5_0009705g0050 Nicotiana tabacum HOM05D008149 ORTHO05D010130 1.3e-06 58.2 64 48.4
Phvul.005G136400 Phaseolus vulgaris HOM05D000010 ORTHO05D000151 1.3e-06 58.2 204 27.5
CAN.G853.5 Capsicum annuum HOM05D008050 ORTHO05D003796 1.7e-06 57.8 164 25.0
Duzib150G0455 Durio zibethinus HOM05D000010 ORTHO05D000151 1.7e-06 57.8 166 30.1
Potri.016G027900 Populus trichocarpa HOM05D002630 ORTHO05D000952 1.7e-06 57.8 197 27.4
PGSC0003DMG400045571 Solanum tuberosum HOM05D008050 ORTHO05D003796 1.7e-06 57.8 149 30.2
FAN14G5613 Fragaria x ananassa HOM05D002630 ORTHO05D000952 2.3e-06 57.4 176 29.0
Nitab4.5_0025925g0010 Nicotiana tabacum HOM05D010426 ORTHO05D003796 2.3e-06 57.4 182 29.1
Peaxi162Scf68101g00002 Petunia axillaris HOM05D007636 ORTHO05D003796 2.3e-06 57.4 111 36.9
Nitab4.5_0009087g0010 Nicotiana tabacum HOM05D009491 ORTHO05D003796 2.9e-06 57.0 175 26.3
Nitab4.5_0009210g0020 Nicotiana tabacum HOM05D009491 ORTHO05D003796 2.9e-06 57.0 175 26.3
Peaxi162Scf00688g00041 Petunia axillaris HOM05D007636 ORTHO05D003796 2.9e-06 57.0 110 37.3
Peaxi162Scf00688g00314 Petunia axillaris HOM05D007636 ORTHO05D003796 2.9e-06 57.0 110 37.3
Nitab4.5_0013311g0020 Nicotiana tabacum HOM05D008050 ORTHO05D003796 3.8e-06 56.6 303 21.1
Nitab4.5_0022592g0010 Nicotiana tabacum HOM05D009491 ORTHO05D003796 3.8e-06 56.6 176 26.1
Nitab4.5_0002608g0030 Nicotiana tabacum HOM05D009491 ORTHO05D003796 5.0e-06 56.2 173 26.6
PGSC0003DMG400031146 Solanum tuberosum HOM05D007636 ORTHO05D003796 5.0e-06 56.2 131 32.8
FAN25G2891 Fragaria x ananassa HOM05D002630 ORTHO05D000952 6.5e-06 55.8 161 30.4
Nitab4.5_0002160g0040 Nicotiana tabacum HOM05D009491 ORTHO05D003796 8.6e-06 55.5 216 25.9
PGSC0003DMG400046261 Solanum tuberosum HOM05D009491 ORTHO05D003796 8.6e-06 55.5 144 26.4


User provided reference genes

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