Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g061870.1 Solanum lycopersicum HOM05D008149 ORTHO05D010130 6.4e-128 460.7 220 100.0
Sopen02g013020 Solanum pennellii HOM05D008149 ORTHO05D010130 9.9e-97 357.1 204 85.3
Solyc02g062060.1 Solanum lycopersicum HOM05D008149 ORTHO05D010130 6.4e-96 354.4 204 84.8
PGSC0003DMG400036456 Solanum tuberosum HOM05D008149 ORTHO05D010130 1.7e-59 233.4 186 65.6
Sopen02g013040 Solanum pennellii HOM05D008149 ORTHO05D010130 3.7e-43 179.1 268 42.2
Solyc02g061900.1 Solanum lycopersicum HOM05D008149 ORTHO05D010130 1.6e-41 173.7 239 43.9
PGSC0003DMG400023892 Solanum tuberosum HOM05D008149 ORTHO05D010130 2.7e-41 172.9 222 46.8
PGSC0003DMG400023889 Solanum tuberosum HOM05D008149 ORTHO05D010130 2.9e-40 169.5 159 57.2
Sopen02g013030 Solanum pennellii HOM05D008149 ORTHO05D010130 4.7e-38 162.2 163 52.1
Sopen02g013010 Solanum pennellii HOM05D008149 ORTHO05D010130 1.4e-37 160.6 145 57.2
CAN.G158.3 Capsicum annuum HOM05D008149 ORTHO05D010130 5.2e-37 158.7 168 48.8
PGSC0003DMG400035879 Solanum tuberosum HOM05D008149 ORTHO05D010130 1.5e-36 157.1 160 53.8
PGSC0003DMG400023888 Solanum tuberosum HOM05D008149 ORTHO05D010130 4.4e-36 155.6 159 55.3
Sopen02g012890 Solanum pennellii HOM05D008149 ORTHO05D010130 9.8e-36 154.5 145 56.6
PGSC0003DMG400037967 Solanum tuberosum HOM05D008149 ORTHO05D010130 9.1e-34 147.9 153 53.6
PGSC0003DMG400045200 Solanum tuberosum HOM05D008149 ORTHO05D010130 1.0e-32 144.4 150 54.7
Solyc02g061910.1 Solanum lycopersicum HOM05D008149 ORTHO05D010130 1.7e-32 143.7 231 42.9
Solyc02g062210.3 Solanum lycopersicum HOM05D008149 ORTHO05D010130 2.2e-32 143.3 185 43.2
Peaxi162Scf00493g00439 Petunia axillaris HOM05D008149 ORTHO05D010130 2.9e-32 142.9 144 52.1
Nitab4.5_0001019g0100 Nicotiana tabacum HOM05D008149 ORTHO05D010130 8.5e-32 141.4 150 48.7
Peaxi162Scf00016g00168 Petunia axillaris HOM05D008149 ORTHO05D010130 2.5e-31 139.8 144 52.8
Peaxi162Scf00066g00145 Petunia axillaris HOM05D008149 ORTHO05D010130 2.1e-30 136.7 145 51.0
CAN.G308.65 Capsicum annuum HOM05D008149 ORTHO05D010130 1.0e-29 134.4 149 47.7
PGSC0003DMG400042894 Solanum tuberosum HOM05D008149 ORTHO05D010130 5.2e-29 132.1 179 42.5
Solyc04g025760.1 Solanum lycopersicum HOM05D008149 ORTHO05D010130 9.8e-28 127.9 218 35.3
Nitab4.5_0009705g0040 Nicotiana tabacum HOM05D008149 ORTHO05D010130 1.4e-26 124.0 149 47.7
Nitab4.5_0013476g0020 Nicotiana tabacum HOM05D008149 ORTHO05D010130 2.0e-25 120.2 150 46.0
PGSC0003DMG400040065 Solanum tuberosum HOM05D008149 ORTHO05D010130 3.5e-25 119.4 138 43.5
Peaxi162Scf01324g00211 Petunia axillaris HOM05D017006 ORTHO05D010130 4.5e-25 119.0 151 45.7
Peaxi162Scf01324g00212 Petunia axillaris HOM05D017006 ORTHO05D010130 4.5e-25 119.0 151 45.7
Peaxi162Scf01780g00003 Petunia axillaris HOM05D017006 ORTHO05D010130 4.5e-25 119.0 151 45.7
Nitab4.5_0001907g0010 Nicotiana tabacum HOM05D008149 ORTHO05D010130 5.9e-25 118.6 164 43.9
Peaxi162Scf00650g00014 Petunia axillaris HOM05D008149 ORTHO05D010130 1.3e-24 117.5 143 48.3
Peaxi162Scf00245g00112 Petunia axillaris HOM05D017006 ORTHO05D010130 2.9e-24 116.3 151 46.4
Sopen02g012300 Solanum pennellii HOM05D010460 ORTHO05D010130 9.5e-23 111.3 145 42.1
Sopen00g013830 Solanum pennellii HOM05D008149 ORTHO05D010130 2.1e-22 110.2 142 42.3
Peaxi162Scf00108g00028 Petunia axillaris HOM05D008149 ORTHO05D010130 1.8e-21 107.1 149 44.3
Nitab4.5_0001874g0070 Nicotiana tabacum HOM05D008149 ORTHO05D010130 3.0e-21 106.3 155 39.4
Nitab4.5_0010957g0020 Nicotiana tabacum HOM05D008149 ORTHO05D010130 4.0e-21 105.9 201 35.3
CAN.G569.40 Capsicum annuum HOM05D008149 ORTHO05D010130 8.9e-21 104.8 142 45.1
Nitab4.5_0000082g0040 Nicotiana tabacum HOM05D008149 ORTHO05D010130 1.5e-20 104.0 201 34.3
Sopen10g029870 Solanum pennellii HOM05D008149 ORTHO05D010130 2.0e-20 103.6 141 43.3
Nitab4.5_0000608g0100 Nicotiana tabacum HOM05D008149 ORTHO05D010130 3.4e-20 102.8 155 40.6
Solyc02g062090.1 Solanum lycopersicum HOM05D008149 ORTHO05D010130 4.4e-20 102.4 76 61.8
Nitab4.5_0001896g0010 Nicotiana tabacum HOM05D008149 ORTHO05D010130 3.7e-19 99.4 149 40.3
Nitab4.5_0003562g0020 Nicotiana tabacum HOM05D008149 ORTHO05D010130 4.9e-19 99.0 155 38.1
Peaxi162Scf00245g01014 Petunia axillaris HOM05D017006 ORTHO05D010130 8.3e-19 98.2 195 34.9
Solyc10g079220.2 Solanum lycopersicum HOM05D008149 ORTHO05D010130 3.2e-18 96.3 141 41.1
CAN.G641.1 Capsicum annuum HOM05D008149 ORTHO05D010130 9.2e-18 94.7 150 36.0
CAN.G641.16 Capsicum annuum HOM05D008149 ORTHO05D010130 9.2e-18 94.7 150 36.0
Sopen10g022760 Solanum pennellii HOM05D000002 ORTHO05D000001 1.6e-17 94.0 141 41.1
CAN.G1485.2 Capsicum annuum HOM05D008149 ORTHO05D010130 4.6e-17 92.4 116 42.2
CAN.G1095.3 Capsicum annuum HOM05D000069 ORTHO05D010130 5.9e-17 92.0 150 36.0
PGSC0003DMG400008178 Solanum tuberosum HOM05D008149 ORTHO05D010130 3.0e-16 89.7 147 41.5
Solyc02g062080.1 Solanum lycopersicum HOM05D008149 ORTHO05D010130 8.6e-16 88.2 94 50.0
PGSC0003DMG400008147 Solanum tuberosum HOM05D008149 ORTHO05D010130 7.3e-15 85.1 147 40.1
Solyc03g114260.1 Solanum lycopersicum HOM05D008050 ORTHO05D003796 3.4e-12 76.3 242 30.6
PGSC0003DMG400007065 Solanum tuberosum HOM05D008050 ORTHO05D003796 3.4e-12 76.3 142 34.5
Peaxi162Scf01327g00121 Petunia axillaris HOM05D003646 ORTHO05D004503 4.4e-12 75.9 189 31.7
CAN.G1612.2 Capsicum annuum HOM05D008149 ORTHO05D010130 9.8e-12 74.7 130 35.4
Peaxi162Scf00692g00052 Petunia axillaris HOM05D010426 ORTHO05D003796 9.8e-12 74.7 189 31.7
PGSC0003DMG400038867 Solanum tuberosum HOM05D009491 ORTHO05D003796 9.8e-12 74.7 176 27.8
Solyc02g062070.2 Solanum lycopersicum HOM05D008149 ORTHO05D010130 1.3e-11 74.3 70 51.4
PGSC0003DMG400008179 Solanum tuberosum HOM05D008149 ORTHO05D010130 2.2e-11 73.6 122 41.0
Peaxi162Scf00245g01210 Petunia axillaris HOM05D017006 ORTHO05D010130 2.9e-11 73.2 136 38.2
CAN.G641.11 Capsicum annuum HOM05D008149 ORTHO05D010130 8.3e-11 71.6 109 36.7
Sopen03g033360 Solanum pennellii HOM05D003268 ORTHO05D003796 1.4e-10 70.9 149 36.9
Nitab4.5_0000499g0070 Nicotiana tabacum HOM05D008050 ORTHO05D003796 4.1e-10 69.3 161 28.6
Nitab4.5_0002160g0040 Nicotiana tabacum HOM05D009491 ORTHO05D003796 7.0e-10 68.6 174 26.4
Nitab4.5_0010159g0010 Nicotiana tabacum HOM05D008050 ORTHO05D003796 9.2e-10 68.2 191 25.7
Nitab4.5_0000016g0610 Nicotiana tabacum HOM05D010426 ORTHO05D003796 1.6e-09 67.4 145 31.0
Peaxi162Scf00027g00162 Petunia axillaris HOM05D010426 ORTHO05D003796 1.6e-09 67.4 166 31.9
Peaxi162Scf00245g00118 Petunia axillaris HOM05D008149 ORTHO05D010130 2.0e-09 67.0 105 40.0
CAN.G616.30 Capsicum annuum HOM05D009491 ORTHO05D003796 2.7e-09 66.6 149 27.5
SGA_v2.0_scaffold18G08273 Striga asiatica HOM05D007636 ORTHO05D003796 3.5e-09 66.2 147 29.9
Atru.chr1.1532 Acer truncatum HOM05D002630 ORTHO05D000952 4.6e-09 65.9 164 32.9
Peaxi162Scf01007g00022 Petunia axillaris HOM05D009491 ORTHO05D003796 4.6e-09 65.9 186 27.4
Peaxi162Scf01007g00024 Petunia axillaris HOM05D009491 ORTHO05D003796 4.6e-09 65.9 186 27.4
Peaxi162Scf01007g00210 Petunia axillaris HOM05D009491 ORTHO05D003796 4.6e-09 65.9 186 27.4
PGSC0003DMG400009377 Solanum tuberosum HOM05D009491 ORTHO05D003796 6.0e-09 65.5 122 30.3
Dinv05036 Davidia involucrata HOM05D002630 ORTHO05D000952 1.7e-08 63.9 143 32.2
Nitab4.5_0001968g0100 Nicotiana tabacum HOM05D008149 ORTHO05D010130 1.7e-08 63.9 131 32.8
Gohir.A06G206200 Gossypium hirsutum HOM05D000010 ORTHO05D000952 2.3e-08 63.5 140 33.6
Cfa013250 Carpinus fangiana HOM05D009365 ORTHO05D000952 3.0e-08 63.2 132 32.6
Gohir.A06G206300 Gossypium hirsutum HOM05D000010 ORTHO05D000952 3.0e-08 63.2 140 33.6
Hma1.2p1_1030F.1_g249870 Hydrangea macrophylla HOM05D000010 ORTHO05D000151 3.0e-08 63.2 151 29.8
Nitab4.5_0000008g0630 Nicotiana tabacum HOM05D010426 ORTHO05D003796 3.9e-08 62.8 114 34.2
Duzib150G0455 Durio zibethinus HOM05D000010 ORTHO05D000151 6.6e-08 62.0 160 31.2
Duzib235G1304 Durio zibethinus HOM05D000010 ORTHO05D000952 8.6e-08 61.6 147 27.2
FvH4_4g12410 Fragaria vesca HOM05D002630 ORTHO05D000952 8.6e-08 61.6 196 26.5
FAN07G2769 Fragaria x ananassa HOM05D002630 ORTHO05D000952 8.6e-08 61.6 230 26.1
Nitab4.5_0001366g0010 Nicotiana tabacum HOM05D008050 ORTHO05D003796 8.6e-08 61.6 185 25.9
Nitab4.5_0009705g0050 Nicotiana tabacum HOM05D008149 ORTHO05D010130 1.1e-07 61.2 62 48.4
Cpa.g.sc435.1 Carica papaya HOM05D000010 ORTHO05D000151 1.9e-07 60.5 163 25.8
FAN12G0860 Fragaria x ananassa HOM05D002630 ORTHO05D000952 1.9e-07 60.5 197 26.9
FAN12G3767 Fragaria x ananassa HOM05D002630 ORTHO05D000952 1.9e-07 60.5 197 26.9
FAN17G1202 Fragaria x ananassa HOM05D002630 ORTHO05D000952 1.9e-07 60.5 231 24.7
Prupe.6G092100 Prunus persica HOM05D010397 ORTHO05D000952 2.5e-07 60.1 175 28.6
Eucgr.B02485 Eucalyptus grandis HOM05D000010 ORTHO05D000151 3.3e-07 59.7 161 29.8
Thecc.05G051100 Theobroma cacao HOM05D000010 ORTHO05D000952 3.3e-07 59.7 124 32.3
Peaxi162Scf00397g00002 Petunia axillaris HOM05D009491 ORTHO05D003796 7.3e-07 58.5 162 25.3
PGSC0003DMG400000154 Solanum tuberosum HOM05D009491 ORTHO05D003796 7.3e-07 58.5 192 22.4
PGSC0003DMG400023887 Solanum tuberosum HOM05D008149 ORTHO05D010130 7.3e-07 58.5 106 37.7
Lj5g0010861 Lotus japonicus HOM05D002630 ORTHO05D000952 9.5e-07 58.2 128 35.9
A05p01760 Brassica napus HOM05D009272 ORTHO05D010513 1.6e-06 57.4 151 29.1
BraA05t19173Z Brassica rapa HOM05D009272 ORTHO05D010513 1.6e-06 57.4 151 29.1
CAN.G616.26 Capsicum annuum HOM05D009491 ORTHO05D003796 1.6e-06 57.4 138 25.4
Duzib212G0444 Durio zibethinus HOM05D010810 ORTHO05D000952 1.6e-06 57.4 143 30.8
Thecc.10G133400 Theobroma cacao HOM05D002630 ORTHO05D000952 1.6e-06 57.4 157 27.4
Cpa.g.sc80.14 Carica papaya HOM05D001613 ORTHO05D001556 2.1e-06 57.0 141 34.8
Ciclev10024200m.g Citrus clementina HOM05D002630 ORTHO05D000952 2.1e-06 57.0 127 34.6
Cc01_g11350 Coffea canephora HOM05D000010 ORTHO05D000151 2.1e-06 57.0 149 28.9
Duzib168G0481 Durio zibethinus HOM05D000010 ORTHO05D000151 2.1e-06 57.0 152 30.3
MD03G1130400 Malus domestica HOM05D010397 ORTHO05D000952 3.6e-06 56.2 131 29.0
Manes.11G142800 Manihot esculenta HOM05D000010 ORTHO05D000151 3.6e-06 56.2 158 28.5
Nitab4.5_0013311g0020 Nicotiana tabacum HOM05D008050 ORTHO05D003796 3.6e-06 56.2 192 25.0
Thecc.09G257900 Theobroma cacao HOM05D000010 ORTHO05D000151 3.6e-06 56.2 160 29.4
Phvul.005G136400 Phaseolus vulgaris HOM05D000010 ORTHO05D000151 4.7e-06 55.8 161 27.3
Rhsim04G0211600 Rhododendron simsii HOM05D008858 ORTHO05D000952 4.7e-06 55.8 157 29.9
RcHm_v2.0_Chr3g0471331 Rosa chinensis HOM05D000010 ORTHO05D022624 4.7e-06 55.8 122 30.3
CAN.G78.31 Capsicum annuum HOM05D001826 ORTHO05D004184 8.1e-06 55.1 151 27.8
Dinv32765 Davidia involucrata HOM05D000010 ORTHO05D000151 8.1e-06 55.1 162 30.9
VMungo1080G0799 Vigna mungo HOM05D000010 ORTHO05D000151 8.1e-06 55.1 161 27.3


User provided reference genes

Program Settings