Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g061620.2 Solanum lycopersicum HOM05D001579 ORTHO05D003470 2.6e-32 141.4 68 100.0
Solyc01g081220.2 Solanum lycopersicum HOM05D001579 ORTHO05D003470 7.2e-30 133.3 68 95.6
CAN.G1412.7 Capsicum annuum HOM05D001579 ORTHO05D003470 5.9e-24 113.6 55 98.2
Solyc10g007060.4 Solanum lycopersicum HOM05D001579 ORTHO05D003470 5.9e-24 113.6 55 98.2
Sopen02g035480 Solanum pennellii HOM05D001579 ORTHO05D003470 5.9e-24 113.6 55 98.2
Sopen10g002960 Solanum pennellii HOM05D001579 ORTHO05D003470 5.9e-24 113.6 55 98.2
PGSC0003DMG400004021 Solanum tuberosum HOM05D001579 ORTHO05D003470 5.9e-24 113.6 55 98.2
PGSC0003DMG400025010 Solanum tuberosum HOM05D001579 ORTHO05D003470 1.3e-23 112.5 55 96.4
CAN.G1298.23 Capsicum annuum HOM05D001579 ORTHO05D003470 1.7e-23 112.1 55 96.4
Solyc02g090860.3 Solanum lycopersicum HOM05D001579 ORTHO05D003470 1.7e-23 112.1 55 96.4
MD05G1066200 Malus domestica HOM05D001579 ORTHO05D003470 1.9e-22 108.6 54 94.4
MD10G1076200 Malus domestica HOM05D001579 ORTHO05D003470 1.9e-22 108.6 54 94.4
Nitab4.5_0004172g0030 Nicotiana tabacum HOM05D001579 ORTHO05D003470 3.2e-22 107.8 60 85.0
Nitab4.5_0000974g0080 Nicotiana tabacum HOM05D001579 ORTHO05D003470 5.5e-22 107.1 55 90.9
Nitab4.5_0011688g0020 Nicotiana tabacum HOM05D001579 ORTHO05D003470 5.5e-22 107.1 55 90.9
SGA_v2.0_scaffold32G13167 Striga asiatica HOM05D001579 ORTHO05D003470 5.5e-22 107.1 58 84.5
EL10Ac3g05071 Beta vulgaris HOM05D001579 ORTHO05D003470 7.2e-22 106.7 54 90.7
Lj2C359T3 Lonicera japonica HOM05D001579 ORTHO05D003470 7.2e-22 106.7 54 92.6
Hund14641 Selenicereus undatus HOM05D001579 ORTHO05D003470 7.2e-22 106.7 54 90.7
Oeu015994.1 Olea europaea HOM05D001579 ORTHO05D003470 9.4e-22 106.3 60 81.7
TPR.G23438 Trifolium pratense HOM05D001579 ORTHO05D003470 9.4e-22 106.3 54 90.7
Migut.B00751 Erythranthe guttata HOM05D001579 ORTHO05D003470 1.2e-21 105.9 54 90.7
Lsat_1_v5_gn_2_67440 Lactuca sativa HOM05D001579 ORTHO05D003470 1.2e-21 105.9 54 92.6
Oeu041647.1 Olea europaea HOM05D001579 ORTHO05D003470 1.6e-21 105.5 55 89.1
Prupe.8G096800 Prunus persica HOM05D001579 ORTHO05D003470 1.6e-21 105.5 54 90.7
Nitab4.5_0000308g0090 Nicotiana tabacum HOM05D001579 ORTHO05D003470 2.1e-21 105.1 55 90.9
Ah.02g117280 Amaranthus hybridus HOM05D001579 ORTHO05D003470 2.7e-21 104.8 54 90.7
DCAR_006199 Daucus carota HOM05D001579 ORTHO05D003470 2.7e-21 104.8 55 89.1
FvH4_3g28200 Fragaria vesca HOM05D001579 ORTHO05D003470 2.7e-21 104.8 54 90.7
FAN11G3917 Fragaria x ananassa HOM05D001579 ORTHO05D003470 2.7e-21 104.8 54 90.7
FAN15G0032 Fragaria x ananassa HOM05D001579 ORTHO05D003470 2.7e-21 104.8 54 90.7
FAN21G0623 Fragaria x ananassa HOM05D001579 ORTHO05D003470 2.7e-21 104.8 54 90.7
FAN27G2756 Fragaria x ananassa HOM05D001579 ORTHO05D003470 2.7e-21 104.8 54 90.7
Nn1g01939 Nelumbo nucifera HOM05D001579 ORTHO05D003470 2.7e-21 104.8 54 90.7
SGA_v2.0_scaffold58G20534 Striga asiatica HOM05D001579 ORTHO05D003470 2.7e-21 104.8 54 90.7
GSVIVG01031967001 Vitis vinifera HOM05D001579 ORTHO05D003470 2.7e-21 104.8 55 89.1
AL7G11270 Arabidopsis lyrata HOM05D001579 ORTHO05D003470 3.6e-21 104.4 54 90.7
AT4G39280 Arabidopsis thaliana HOM05D001579 ORTHO05D003470 3.6e-21 104.4 54 90.7
CARHR247410 Cardamine hirsuta HOM05D001579 ORTHO05D003470 3.6e-21 104.4 54 90.7
FAN24G0111 Fragaria x ananassa HOM05D001579 ORTHO05D003470 3.6e-21 104.4 55 89.1
HanXRQChr14g0437911 Helianthus annuus HOM05D001579 ORTHO05D003470 3.6e-21 104.4 54 90.7
HanXRQChr14g0446281 Helianthus annuus HOM05D001579 ORTHO05D003470 3.6e-21 104.4 54 90.7
MSTRG.16808 Avicennia marina HOM05D001579 ORTHO05D003470 4.7e-21 104.0 54 90.7
Lj7A248G12 Lonicera japonica HOM05D001579 ORTHO05D003470 4.7e-21 104.0 54 88.9
Medtr4g070040 Medicago truncatula HOM05D001579 ORTHO05D003470 4.7e-21 104.0 54 88.9
RcHm_v2.0_Chr6g0264251 Rosa chinensis HOM05D001579 ORTHO05D003470 4.7e-21 104.0 54 90.7
THA.LOC104804143 Tarenaya hassleriana HOM05D001579 ORTHO05D003470 4.7e-21 104.0 54 92.6
Ah.12g056190 Amaranthus hybridus HOM05D001579 ORTHO05D006780 6.1e-21 103.6 58 86.2
BcaC07g41119 Brassica carinata HOM05D001579 ORTHO05D003470 6.1e-21 103.6 54 88.9
A09p57990 Brassica napus HOM05D001579 ORTHO05D003470 6.1e-21 103.6 54 88.9
C08p41200 Brassica napus HOM05D001579 ORTHO05D003470 6.1e-21 103.6 54 88.9
BolC8t51687H Brassica oleracea HOM05D001579 ORTHO05D003470 6.1e-21 103.6 54 88.9
BraA09t41189Z Brassica rapa HOM05D001579 ORTHO05D003470 6.1e-21 103.6 54 88.9
ECA240G1027 Erigeron canadensis HOM05D001579 ORTHO05D003470 6.1e-21 103.6 55 87.3
SalBow6G0592 Salvia bowleyana HOM05D001579 ORTHO05D003470 6.1e-21 103.6 54 88.9
SalBow6G1678 Salvia bowleyana HOM05D001579 ORTHO05D003470 6.1e-21 103.6 54 88.9
TAR376G1017 Trochodendron aralioides HOM05D001579 ORTHO05D003470 6.1e-21 103.6 54 88.9
vmacro11113 Vaccinium macrocarpon HOM05D001579 ORTHO05D003470 6.1e-21 103.6 55 87.3
AUR62003165 Chenopodium quinoa HOM05D001579 ORTHO05D003470 8.0e-21 103.2 54 90.7
AUR62034498 Chenopodium quinoa HOM05D001579 ORTHO05D003470 8.0e-21 103.2 54 90.7
Cc02_g25810 Coffea canephora HOM05D001579 ORTHO05D003470 8.0e-21 103.2 55 85.5
FAN16G0460 Fragaria x ananassa HOM05D001579 ORTHO05D003470 8.0e-21 103.2 54 88.9
Peaxi162Scf00016g00732 Petunia axillaris HOM05D001579 ORTHO05D003470 8.0e-21 103.2 55 85.5
arahy.Tifrunner.gnm1.ann1.D5Q7RU Arachis hypogaea HOM05D001579 ORTHO05D003470 1.0e-20 102.8 54 88.9
Carub.0004s0076 Capsella rubella HOM05D001579 ORTHO05D003470 1.0e-20 102.8 54 88.9
AUR62007985 Chenopodium quinoa HOM05D001579 ORTHO05D003470 1.0e-20 102.8 63 77.8
FvH4_2g08790 Fragaria vesca HOM05D001579 ORTHO05D003470 1.0e-20 102.8 54 88.9
Potri.009G116100 Populus trichocarpa HOM05D001579 ORTHO05D003470 1.0e-20 102.8 55 85.5
TAR628G1064 Trochodendron aralioides HOM05D001579 ORTHO05D003470 1.0e-20 102.8 54 88.9
Sabra04G0102800 Salix brachista HOM05D001579 ORTHO05D003470 1.4e-20 102.4 54 87.0
SEGI_28257 Sequoiadendron giganteum HOM05D001579 ORTHO05D003470 1.4e-20 102.4 54 87.0
AL4G10950 Arabidopsis lyrata HOM05D001579 ORTHO05D003470 1.8e-20 102.1 54 87.0
BcaB03g12963 Brassica carinata HOM05D001579 ORTHO05D003470 1.8e-20 102.1 54 87.0
BcaB08g35003 Brassica carinata HOM05D001579 ORTHO05D003470 1.8e-20 102.1 54 87.0
Cpa.g.sc62.152 Carica papaya HOM05D001579 ORTHO05D003470 1.8e-20 102.1 54 88.9
Potri.004G155000 Populus trichocarpa HOM05D001579 ORTHO05D003470 1.8e-20 102.1 54 87.0
Sp4g00870 Schrenkiella parvula HOM05D001579 ORTHO05D003470 1.8e-20 102.1 54 87.0
Sc13g0008990 Simmondsia chinensis HOM05D001579 ORTHO05D003470 1.8e-20 102.1 54 90.7
THA.LOC104824827 Tarenaya hassleriana HOM05D001579 ORTHO05D003470 1.8e-20 102.1 54 88.9
Carub.0007s0120 Capsella rubella HOM05D001579 ORTHO05D003470 2.3e-20 101.7 54 88.9
Eucgr.D00245 Eucalyptus grandis HOM05D001579 ORTHO05D003470 2.3e-20 101.7 60 76.7
Glyma.11G117800 Glycine max HOM05D001579 ORTHO05D003470 2.3e-20 101.7 55 85.5
SHI02914 Sapria himalayana HOM05D001579 ORTHO05D003470 2.3e-20 101.7 60 80.0
TPR.G19411 Trifolium pratense HOM05D001579 ORTHO05D003470 2.3e-20 101.7 54 87.0
CsaV3_3G002020 Cucumis sativus L. HOM05D001579 ORTHO05D003470 3.0e-20 101.3 54 85.2
FAN16G2055 Fragaria x ananassa HOM05D001579 ORTHO05D003470 3.0e-20 101.3 55 83.6
Glyma.12G043200 Glycine max HOM05D001579 ORTHO05D003470 3.0e-20 101.3 55 83.6
Sed0021732 Sechium edule HOM05D001579 ORTHO05D003470 3.0e-20 101.3 54 85.2
Aa31LG7G14810 Aethionema arabicum HOM05D001579 ORTHO05D003470 4.0e-20 100.9 54 87.0
CANSAT80G0427 Cannabis sativa HOM05D001579 ORTHO05D003470 4.0e-20 100.9 54 88.9
Lalb_Chr01g0002541 Lupinus albus HOM05D001579 ORTHO05D003470 4.0e-20 100.9 55 83.6
Phvul.011G045200 Phaseolus vulgaris HOM05D001579 ORTHO05D003470 4.0e-20 100.9 54 85.2
Ciclev10028310m.g Citrus clementina HOM05D001579 ORTHO05D003470 5.2e-20 100.5 54 87.0
PSO447G0328 Papaver somniferum HOM05D001579 ORTHO05D003470 5.2e-20 100.5 54 85.2
PSO478G3633 Papaver somniferum HOM05D001579 ORTHO05D003470 5.2e-20 100.5 54 85.2
Psat7g141360 Pisum sativum HOM05D001579 ORTHO05D003470 5.2e-20 100.5 54 83.3
PGR042G0613 Punica granatum HOM05D001579 ORTHO05D003470 5.2e-20 100.5 54 87.0
Rhsim11G0177200 Rhododendron simsii HOM05D001579 ORTHO05D003470 5.2e-20 100.5 60 78.3
MELO3C013873.2 Cucumis melo HOM05D001579 ORTHO05D003470 6.8e-20 100.1 54 83.3
Hund11566 Selenicereus undatus HOM05D001579 ORTHO05D003470 6.8e-20 100.1 54 88.9
Carub.0005s1088 Capsella rubella HOM05D001579 ORTHO05D003470 8.8e-20 99.8 54 87.0
AUR62034190 Chenopodium quinoa HOM05D001579 ORTHO05D003470 8.8e-20 99.8 54 88.9
AL7G31990 Arabidopsis lyrata HOM05D001579 ORTHO05D003470 1.2e-19 99.4 54 88.9
CSS0005142 Camellia sinensis var. sinensis HOM05D001579 ORTHO05D003470 1.2e-19 99.4 54 87.0
CSS0013099 Camellia sinensis var. sinensis HOM05D001579 ORTHO05D003470 1.2e-19 99.4 54 87.0
CSS0031219 Camellia sinensis var. sinensis HOM05D001579 ORTHO05D003470 1.2e-19 99.4 54 87.0
CSS0049673 Camellia sinensis var. sinensis HOM05D001579 ORTHO05D003470 1.2e-19 99.4 54 87.0
Ca_01102_v3 Cicer arietinum L. HOM05D001579 ORTHO05D003470 1.2e-19 99.4 54 87.0
Manes.17G101200 Manihot esculenta HOM05D001579 ORTHO05D003470 1.2e-19 99.4 54 83.3
VMungo1127G1806 Vigna mungo HOM05D001579 ORTHO05D003470 1.2e-19 99.4 54 87.0
Thhalv10007412m.g Eutrema salsugineum HOM05D001579 ORTHO05D003470 1.5e-19 99.0 54 83.3
Lalb_Chr03g0025681 Lupinus albus HOM05D001579 ORTHO05D003470 1.5e-19 99.0 54 83.3
QL11p043704 Quercus lobata HOM05D001579 ORTHO05D003470 2.0e-19 98.6 60 78.3
TWI79G0010 Tripterygium wilfordii HOM05D001579 ORTHO05D003470 2.0e-19 98.6 54 85.2
Cfa005003 Carpinus fangiana HOM05D001579 ORTHO05D003470 2.6e-19 98.2 54 85.2
Lj3g0013700 Lotus japonicus HOM05D001579 ORTHO05D003470 2.6e-19 98.2 54 83.3
MBI01_g34891_MAGBIO Magnolia biondii HOM05D001579 ORTHO05D003470 2.6e-19 98.2 54 83.3
BcaB06g27782 Brassica carinata HOM05D001579 ORTHO05D003470 3.4e-19 97.8 54 83.3
Duzib052G0487 Durio zibethinus HOM05D001579 ORTHO05D003470 3.4e-19 97.8 54 85.2
Duzib248G1006 Durio zibethinus HOM05D001579 ORTHO05D003470 3.4e-19 97.8 54 85.2
Thecc.02G085100 Theobroma cacao HOM05D001579 ORTHO05D003470 3.4e-19 97.8 54 85.2
Atru.chr5.3017 Acer truncatum HOM05D001579 ORTHO05D003470 4.4e-19 97.4 54 85.2
Actinidia00524 Actinidia chinensis HOM05D001579 ORTHO05D003470 4.4e-19 97.4 54 85.2
Actinidia27894 Actinidia chinensis HOM05D001579 ORTHO05D003470 5.7e-19 97.1 54 85.2
CDE04G1236 Ceratophyllum demersum HOM05D001579 ORTHO05D003470 5.7e-19 97.1 54 83.3
CDE06G1318 Ceratophyllum demersum HOM05D001579 ORTHO05D003470 5.7e-19 97.1 54 83.3
Haze_02385 Corylus avellana HOM05D001579 ORTHO05D003470 5.7e-19 97.1 54 83.3
Glyma.17G231300 Glycine max HOM05D001579 ORTHO05D003470 5.7e-19 97.1 55 81.8
Lj1g0020223 Lotus japonicus HOM05D001579 ORTHO05D003470 5.7e-19 97.1 54 83.3
BcaC02g08772 Brassica carinata HOM05D001579 ORTHO05D003470 9.7e-19 96.3 54 83.3
C04p50830 Brassica napus HOM05D001579 ORTHO05D003470 9.7e-19 96.3 54 83.3
BolC4t26677H Brassica oleracea HOM05D001579 ORTHO05D003470 9.7e-19 96.3 54 83.3
Gohir.A04G130900 Gossypium hirsutum HOM05D001579 ORTHO05D003470 9.7e-19 96.3 54 83.3
Os10g0400800 Oryza sativa ssp. japonica HOM05D001579 ORTHO05D003470 9.7e-19 96.3 60 71.7
unitig_0.g66 Utricularia gibba HOM05D001579 ORTHO05D003470 9.7e-19 96.3 56 78.6
Zm00001eb255720 Zea mays HOM05D001579 ORTHO05D003470 1.3e-18 95.9 60 70.0
ATR0051G048 Amborella trichopoda HOM05D001579 ORTHO05D003470 1.7e-18 95.5 54 81.5
RcHm_v2.0_Chr7g0204471 Rosa chinensis HOM05D001579 ORTHO05D003470 1.7e-18 95.5 54 81.5
Duzib132G0542 Durio zibethinus HOM05D001579 ORTHO05D003470 2.2e-18 95.1 54 81.5
vmacro02106 Vaccinium macrocarpon HOM05D001579 ORTHO05D003470 2.2e-18 95.1 59 76.3
Gohir.D04G167200 Gossypium hirsutum HOM05D001579 ORTHO05D003470 2.8e-18 94.7 54 81.5
ATR1101G101 Amborella trichopoda HOM05D001579 ORTHO05D003470 3.7e-18 94.4 54 79.6
ClCG10G001880 Citrullus lanatus HOM05D001579 ORTHO05D003470 3.7e-18 94.4 58 77.6
Pp3c2_16770 Physcomitrium patens HOM05D001579 ORTHO05D003470 3.7e-18 94.4 54 81.5
COL.COLO4_25932 Corchorus olitorius HOM05D001579 ORTHO05D003470 4.8e-18 94.0 54 79.6
CiPaw.05G064600 Carya illinoinensis HOM05D001579 ORTHO05D003470 6.3e-18 93.6 54 79.6
Gorai.012G155500 Gossypium raimondii HOM05D001579 ORTHO05D003470 6.3e-18 93.6 54 79.6
A04p16340 Brassica napus HOM05D001579 ORTHO05D003470 1.1e-17 92.8 54 79.6
BraA04t17272Z Brassica rapa HOM05D001579 ORTHO05D003470 1.1e-17 92.8 54 79.6
Rhsim05G0074300 Rhododendron simsii HOM05D001579 ORTHO05D003470 1.1e-17 92.8 56 76.8
CBR_g23301 Chara braunii HOM05D001579 ORTHO05D003470 1.4e-17 92.4 53 81.1
Mapoly0012s0145 Marchantia polymorpha HOM05D001579 ORTHO05D003470 1.4e-17 92.4 58 74.1
AagrBONN_evm.TU.Sc2ySwM_344.2010 Anthoceros agrestis HOM05D001579 ORTHO05D003470 9.1e-17 89.7 57 71.9
SMO119G0093 Selaginella moellendorffii HOM05D001579 ORTHO05D003470 2.0e-16 88.6 53 79.2
Aqoxy7G01384 Aquilegia oxysepala HOM05D001579 ORTHO05D003470 5.9e-16 87.0 60 63.3
BcaC08g46253 Brassica carinata HOM05D001579 ORTHO05D003470 5.9e-16 87.0 54 77.8
BcaC08g46255 Brassica carinata HOM05D001579 ORTHO05D003470 5.9e-16 87.0 54 77.8
PRCOL_00000627 Prasinoderma coloniale HOM05D001579 ORTHO05D003470 1.0e-15 86.3 53 75.5
Cre09.g389430 Chlamydomonas reinhardtii HOM05D001579 ORTHO05D003470 3.2e-14 81.3 53 69.8
Hma1.2p1_3239F.1_g334310 Hydrangea macrophylla HOM05D001579 ORTHO05D003470 1.2e-13 79.3 67 62.7
MCO10G005 Micromonas commoda HOM05D001579 ORTHO05D003470 6.1e-13 77.0 53 66.0
Hma1.2p1_0633F.1_g192550 Hydrangea macrophylla HOM05D001579 ORTHO05D003470 8.0e-13 76.6 55 74.5
Hma1.2p1_1375F.1_g279070 Hydrangea macrophylla HOM05D001579 ORTHO05D003470 8.0e-13 76.6 55 74.5
QL11p044403 Quercus lobata HOM05D001579 ORTHO05D003470 4.4e-11 70.9 54 63.0
BcaB03g15109 Brassica carinata HOM05D001579 ORTHO05D003470 1.8e-09 65.5 54 64.8
Haze_27501 Corylus avellana HOM05D001579 ORTHO05D003470 1.7e-07 58.9 52 50.0
HPP92_002579 Vanilla planifolia HOM05D001579 ORTHO05D003470 1.7e-07 58.9 39 69.2


User provided reference genes

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