Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g050290.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 7.7e-58 226.9 110 100.0
Solyc00g049210.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.1e-24 116.7 74 81.1
Solyc00g500249.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.1e-24 116.7 74 81.1
Solyc00g500348.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.1e-24 116.7 74 81.1
Sopen05g012690 Solanum pennellii HOM05D003783 ORTHO05D004568 1.5e-24 116.3 74 79.7
Peaxi162Scf00707g00004 Petunia axillaris HOM05D003783 ORTHO05D004568 5.6e-24 114.4 74 79.7
Peaxi162Scf02040g00001 Petunia axillaris HOM05D003783 ORTHO05D004568 5.6e-24 114.4 74 79.7
PGSC0003DMG400016897 Solanum tuberosum HOM05D003783 ORTHO05D004568 5.6e-24 114.4 74 79.7
AL3G44640 Arabidopsis lyrata HOM05D003783 ORTHO05D004568 1.2e-23 113.2 74 78.4
ATMG00830 Arabidopsis thaliana HOM05D003783 ORTHO05D004568 1.2e-23 113.2 74 78.4
BcaC09g49580 Brassica carinata HOM05D003783 ORTHO05D004568 1.2e-23 113.2 74 78.4
BcaC09g49594 Brassica carinata HOM05D003783 ORTHO05D004568 1.2e-23 113.2 74 78.4
BNapus_Darmor_BZH_scaffold_234p00030 Brassica napus HOM05D003783 ORTHO05D004568 1.2e-23 113.2 74 78.4
BraSC177t45753Z Brassica rapa HOM05D003783 ORTHO05D004568 1.2e-23 113.2 74 78.4
BraSC77t46622Z Brassica rapa HOM05D003783 ORTHO05D004568 1.2e-23 113.2 74 78.4
CARHR283110 Cardamine hirsuta HOM05D003783 ORTHO05D004568 1.2e-23 113.2 74 78.4
CARHR287240 Cardamine hirsuta HOM05D003783 ORTHO05D004568 1.2e-23 113.2 73 79.5
Sp3g25620 Schrenkiella parvula HOM05D003783 ORTHO05D004568 1.2e-23 113.2 74 78.4
Dinv06713 Davidia involucrata HOM05D003783 ORTHO05D004568 2.1e-23 112.5 74 77.0
CAN.G497.18 Capsicum annuum HOM05D003783 ORTHO05D004568 2.8e-23 112.1 74 78.4
Aa31csc549G20 Aethionema arabicum HOM05D003783 ORTHO05D004568 1.1e-22 110.2 74 77.0
arahy.Tifrunner.gnm1.ann1.WX3135 Arachis hypogaea HOM05D003783 ORTHO05D004568 3.1e-22 108.6 74 77.0
DCAR_031805 Daucus carota HOM05D003783 ORTHO05D004568 3.1e-22 108.6 74 77.0
DCAR_032038 Daucus carota HOM05D003783 ORTHO05D004568 3.1e-22 108.6 74 77.0
DCAR_032429 Daucus carota HOM05D003783 ORTHO05D004568 3.1e-22 108.6 74 77.0
HanXRQChr04g0109071 Helianthus annuus HOM05D003783 ORTHO05D004568 3.1e-22 108.6 74 77.0
HanXRQChr08g0236011 Helianthus annuus HOM05D003783 ORTHO05D004568 3.1e-22 108.6 74 77.0
HanXRQChr14g0434351 Helianthus annuus HOM05D003783 ORTHO05D004568 3.1e-22 108.6 74 77.0
HanXRQMTg0579571 Helianthus annuus HOM05D003783 ORTHO05D004568 3.1e-22 108.6 74 77.0
Lsat_1_v5_gn_5_16100 Lactuca sativa HOM05D003783 ORTHO05D004568 3.1e-22 108.6 74 77.0
Lalb_Chr00c29g0408271 Lupinus albus HOM05D003783 ORTHO05D004568 3.1e-22 108.6 74 77.0
Nitab4.5_0002888g0030 Nicotiana tabacum HOM05D003783 ORTHO05D004568 3.1e-22 108.6 56 94.6
Nitab4.5_0004300g0270 Nicotiana tabacum HOM05D003783 ORTHO05D004568 4.0e-22 108.2 74 75.7
Solyc11g063620.2 Solanum lycopersicum HOM05D003783 ORTHO05D004568 4.0e-22 108.2 57 93.0
Nitab4.5_0011099g0010 Nicotiana tabacum HOM05D003783 ORTHO05D004568 6.8e-22 107.5 64 82.8
ECA039G0028 Erigeron canadensis HOM05D003783 ORTHO05D004568 8.9e-22 107.1 57 93.0
Gorai.001G160200 Gossypium raimondii HOM05D003783 ORTHO05D004568 8.9e-22 107.1 74 75.7
Gorai.013G137500 Gossypium raimondii HOM05D003783 ORTHO05D004568 8.9e-22 107.1 74 75.7
HanXRQChr09g0246391 Helianthus annuus HOM05D003783 ORTHO05D004568 8.9e-22 107.1 74 74.3
LjContig00315g0021149 Lotus japonicus HOM05D003783 ORTHO05D004568 1.2e-21 106.7 74 75.7
LjContig00439g0010231 Lotus japonicus HOM05D003783 ORTHO05D004568 1.2e-21 106.7 74 75.7
MD14G1092300 Malus domestica HOM05D003783 ORTHO05D004568 1.2e-21 106.7 74 75.7
RhsimMtG0005400 Rhododendron simsii HOM05D003783 ORTHO05D004568 1.2e-21 106.7 57 91.2
SabraMtG0000900 Salix brachista HOM05D003783 ORTHO05D004568 1.2e-21 106.7 74 75.7
SalBow1G3009 Salvia bowleyana HOM05D003783 ORTHO05D004568 1.5e-21 106.3 81 71.6
Sc11g0004390 Simmondsia chinensis HOM05D003783 ORTHO05D004568 1.5e-21 106.3 74 75.7
Ah.10g028070 Amaranthus hybridus HOM05D003783 ORTHO05D004568 2.0e-21 105.9 74 74.3
CANSAT16G0001 Cannabis sativa HOM05D003783 ORTHO05D004568 2.6e-21 105.5 81 70.4
Zm00001eb434740 Zea mays HOM05D003783 ORTHO05D004568 2.6e-21 105.5 74 74.3
Zm00001eb436360 Zea mays HOM05D003783 ORTHO05D004568 2.6e-21 105.5 74 74.3
Zm00001eb437010 Zea mays HOM05D003783 ORTHO05D004568 2.6e-21 105.5 74 74.3
Zm00001eb438050 Zea mays HOM05D003783 ORTHO05D004568 2.6e-21 105.5 74 74.3
Zm00001eb438170 Zea mays HOM05D003783 ORTHO05D004568 2.6e-21 105.5 74 74.3
Zm00001eb438820 Zea mays HOM05D003783 ORTHO05D004568 2.6e-21 105.5 74 74.3
Medtr0212s0020 Medicago truncatula HOM05D003783 ORTHO05D004568 3.4e-21 105.1 74 75.7
Psat4g179160 Pisum sativum HOM05D003783 ORTHO05D004568 3.4e-21 105.1 74 75.7
RcHm_v2.0_Chr6g0258021 Rosa chinensis HOM05D003783 ORTHO05D004568 3.4e-21 105.1 57 91.2
RcHm_v2.0_MTg0498851 Rosa chinensis HOM05D003783 ORTHO05D004568 3.4e-21 105.1 57 91.2
TPR.G885 Trifolium pratense HOM05D003783 ORTHO05D004568 3.4e-21 105.1 74 75.7
CsaV3_UNG210090 Cucumis sativus L. HOM05D003783 ORTHO05D004568 4.4e-21 104.8 73 74.0
Ah.00g237920 Amaranthus hybridus HOM05D003783 ORTHO05D004568 5.8e-21 104.4 74 73.0
Ah.01g011790 Amaranthus hybridus HOM05D003783 ORTHO05D004568 5.8e-21 104.4 74 73.0
HanXRQChr01g0003471 Helianthus annuus HOM05D003783 ORTHO05D004568 5.8e-21 104.4 74 74.3
MBI05_g05347_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 9.9e-21 103.6 69 76.8
Nn1g09973 Nelumbo nucifera HOM05D003783 ORTHO05D004568 9.9e-21 103.6 69 76.8
Nn1g10045 Nelumbo nucifera HOM05D003783 ORTHO05D004568 9.9e-21 103.6 69 76.8
Nn1g10116 Nelumbo nucifera HOM05D003783 ORTHO05D004568 9.9e-21 103.6 69 76.8
SHI54253 Sapria himalayana HOM05D003783 ORTHO05D004568 9.9e-21 103.6 74 73.0
SHI54813 Sapria himalayana HOM05D003783 ORTHO05D004568 9.9e-21 103.6 74 73.0
SGA_v2.0_scaffold245G44749 Striga asiatica HOM05D003783 ORTHO05D004568 9.9e-21 103.6 74 73.0
AUR62042333 Chenopodium quinoa HOM05D003783 ORTHO05D004568 1.7e-20 102.8 74 73.0
Nn3g20873 Nelumbo nucifera HOM05D003783 ORTHO05D004568 1.7e-20 102.8 69 75.4
GSVIVG01006218001 Vitis vinifera HOM05D003783 ORTHO05D004568 6.4e-20 100.9 69 76.8
MBI19_g47479_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 8.4e-20 100.5 80 67.5
Lsat_1_v5_gn_7_99780 Lactuca sativa HOM05D003783 ORTHO05D004568 2.4e-19 99.0 74 70.3
SHI54470 Sapria himalayana HOM05D003783 ORTHO05D004568 2.4e-19 99.0 74 70.3
Aqoxy163s002 Aquilegia oxysepala HOM05D003783 ORTHO05D004568 5.4e-19 97.8 74 70.3
Sc22g0004100 Simmondsia chinensis HOM05D003783 ORTHO05D004568 5.4e-19 97.8 74 70.3
GSVIVG01004964001 Vitis vinifera HOM05D003783 ORTHO05D004568 5.4e-19 97.8 69 75.4
Eucgr.C03075 Eucalyptus grandis HOM05D003783 ORTHO05D004568 9.2e-19 97.1 70 72.9
CAN.G124.8 Capsicum annuum HOM05D003783 ORTHO05D004568 1.6e-18 96.3 77 66.2
Nitab4.5_0000172g1380 Nicotiana tabacum HOM05D003783 ORTHO05D004568 3.5e-18 95.1 57 82.5
CDE02G3531 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 1.3e-17 93.2 69 69.6
Psat7g150720 Pisum sativum HOM05D003783 ORTHO05D004568 2.3e-17 92.4 74 67.6
Thhalv10029166m.g Eutrema salsugineum HOM05D003783 ORTHO05D004568 1.1e-16 90.1 63 74.6
CAN.G1576.3 Capsicum annuum HOM05D003783 ORTHO05D004568 2.5e-16 89.0 74 64.9
Nitab4.5_0000592g0140 Nicotiana tabacum HOM05D003783 ORTHO05D004568 5.6e-16 87.8 70 68.6
Psat6g195120 Pisum sativum HOM05D003783 ORTHO05D004568 1.6e-15 86.3 49 87.8
Solyc12g035910.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 4.7e-15 84.7 49 81.6
CAN.G1001.41 Capsicum annuum HOM05D003783 ORTHO05D004568 1.4e-14 83.2 53 79.2
SHI36895 Sapria himalayana HOM05D003783 ORTHO05D004568 1.7e-12 76.3 57 73.7
Nitab4.5_0010936g0010 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.0e-09 67.0 40 85.0
SEGI_30299 Sequoiadendron giganteum HOM05D003783 ORTHO05D004568 8.7e-09 63.9 57 64.9
C05p22550 Brassica napus HOM05D003783 ORTHO05D004568 1.1e-08 63.5 36 86.1
BolC5t30954H Brassica oleracea HOM05D003783 ORTHO05D004568 1.5e-08 63.2 36 86.1
CAN.G60.11 Capsicum annuum HOM05D001322 ORTHO05D001301 3.3e-08 62.0 35 88.6
arahy.Tifrunner.gnm1.ann1.BUQ0M3 Arachis hypogaea HOM05D003783 ORTHO05D004568 7.3e-08 60.8 34 88.2
Nitab4.5_0005837g0060 Nicotiana tabacum HOM05D000102 ORTHO05D000138 1.3e-07 60.1 34 82.4
SHI11506 Sapria himalayana HOM05D003783 ORTHO05D004568 3.6e-07 58.5 35 77.1
Solyc04g049870.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 3.6e-07 58.5 64 56.2


User provided reference genes

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