Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g038815.1 Solanum lycopersicum HOM05D004607 ORTHO05D005836 1.5e-87 326.2 175 100.0
Sopen02g012590 Solanum pennellii HOM05D004607 ORTHO05D005836 1.6e-86 322.8 175 98.9
Nitab4.5_0000467g0060 Nicotiana tabacum HOM05D004607 ORTHO05D005836 2.4e-69 265.8 178 79.2
Peaxi162Scf01051g00133 Petunia axillaris HOM05D004607 ORTHO05D005836 5.2e-56 221.5 181 65.2
CAN.G1238.9 Capsicum annuum HOM05D004607 ORTHO05D005836 9.8e-55 217.2 171 65.5
Solyc02g082710.3 Solanum lycopersicum HOM05D004607 ORTHO05D005836 9.8e-55 217.2 172 65.1
Dinv40187 Davidia involucrata HOM05D004607 ORTHO05D005836 1.7e-54 216.5 175 64.6
Sopen02g027460 Solanum pennellii HOM05D004607 ORTHO05D005836 8.3e-54 214.2 172 64.5
Nitab4.5_0011694g0010 Nicotiana tabacum HOM05D004607 ORTHO05D005836 2.4e-53 212.6 171 64.3
Dinv08165 Davidia involucrata HOM05D004607 ORTHO05D005836 1.0e-51 207.2 168 63.7
GSVIVG01026644001 Vitis vinifera HOM05D004607 ORTHO05D005836 2.9e-51 205.7 177 62.1
Actinidia17362 Actinidia chinensis HOM05D004607 ORTHO05D005836 1.5e-50 203.4 168 64.3
CSS0035278 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 3.2e-50 202.2 168 62.5
Cc07_g11810 Coffea canephora HOM05D004607 ORTHO05D005836 4.2e-50 201.8 168 63.7
FAN28G2666 Fragaria x ananassa HOM05D004607 ORTHO05D005836 5.5e-50 201.4 176 60.8
CSS0013050 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 7.2e-50 201.1 168 62.5
Hma1.2p1_0300F.1_g118020 Hydrangea macrophylla HOM05D004607 ORTHO05D005836 4.7e-49 198.4 166 60.8
CiPaw.08G181500 Carya illinoinensis HOM05D004607 ORTHO05D005836 1.0e-48 197.2 170 61.8
FvH4_1g10350 Fragaria vesca HOM05D004607 ORTHO05D005836 2.3e-48 196.1 176 59.7
Actinidia22900 Actinidia chinensis HOM05D004607 ORTHO05D005836 1.5e-47 193.4 168 63.1
MD02G1116800 Malus domestica HOM05D004607 ORTHO05D005836 2.0e-47 193.0 163 61.3
Potri.005G101300 Populus trichocarpa HOM05D004607 ORTHO05D005836 2.6e-47 192.6 165 63.0
MD02G1117000 Malus domestica HOM05D004607 ORTHO05D005836 9.8e-47 190.7 163 61.3
RcHm_v2.0_Chr2g0097211 Rosa chinensis HOM05D004607 ORTHO05D005836 1.7e-46 189.9 176 59.1
Prupe.7G182100 Prunus persica HOM05D004607 ORTHO05D005836 4.9e-46 188.3 167 60.5
HanXRQChr16g0531851 Helianthus annuus HOM05D004607 ORTHO05D005836 6.3e-46 188.0 178 56.7
Nitab4.5_0000702g0180 Nicotiana tabacum HOM05D004607 ORTHO05D005836 8.3e-46 187.6 158 62.0
CiPaw.07G003100 Carya illinoinensis HOM05D004607 ORTHO05D005836 1.6e-44 183.3 163 59.5
Migut.C01149 Erythranthe guttata HOM05D004607 ORTHO05D005836 2.0e-44 183.0 169 55.0
Migut.K01195 Erythranthe guttata HOM05D004607 ORTHO05D005836 4.5e-44 181.8 169 54.4
Lsat_1_v5_gn_3_68061 Lactuca sativa HOM05D004607 ORTHO05D005836 4.5e-44 181.8 179 56.4
CANSAT80G1685 Cannabis sativa HOM05D004607 ORTHO05D005836 5.9e-44 181.4 174 54.6
CANSAT80G2088 Cannabis sativa HOM05D004607 ORTHO05D005836 5.9e-44 181.4 174 54.6
Nitab4.5_0001365g0040 Nicotiana tabacum HOM05D004607 ORTHO05D005836 1.0e-43 180.6 154 66.9
PGSC0003DMG400001520 Solanum tuberosum HOM05D004607 ORTHO05D005836 2.9e-43 179.1 149 62.4
TWI73G0051 Tripterygium wilfordii HOM05D004607 ORTHO05D005836 3.8e-43 178.7 163 58.9
Migut.G00971 Erythranthe guttata HOM05D004607 ORTHO05D005836 1.1e-42 177.2 169 53.3
PGR042G1958 Punica granatum HOM05D004607 ORTHO05D005836 3.3e-42 175.6 165 56.4
MSTRG.1461 Avicennia marina HOM05D004607 ORTHO05D005836 5.6e-42 174.9 167 53.9
TWI09G0436 Tripterygium wilfordii HOM05D004607 ORTHO05D005836 5.6e-42 174.9 165 57.0
Cpa.g.c27001.3 Carica papaya HOM05D004607 ORTHO05D005836 7.2e-42 174.5 161 57.8
FAN26G2101 Fragaria x ananassa HOM05D004607 ORTHO05D005836 1.6e-41 173.3 202 49.0
BolC8t48369H Brassica oleracea HOM05D004607 ORTHO05D005836 2.1e-41 172.9 164 54.9
BraA08t33239Z Brassica rapa HOM05D004607 ORTHO05D005836 2.1e-41 172.9 164 54.9
Carub.0007s2507 Capsella rubella HOM05D004607 ORTHO05D005836 1.8e-40 169.9 164 53.7
CsaV3_3G000280 Cucumis sativus L. HOM05D004607 ORTHO05D005836 2.3e-40 169.5 165 53.3
Eucgr.I00568 Eucalyptus grandis HOM05D004607 ORTHO05D005836 2.3e-40 169.5 166 53.6
CARHR222820 Cardamine hirsuta HOM05D004607 ORTHO05D005836 3.0e-40 169.1 164 54.3
Gorai.010G212400 Gossypium raimondii HOM05D004607 ORTHO05D005836 3.0e-40 169.1 162 54.3
Nn2g14487 Nelumbo nucifera HOM05D004607 ORTHO05D005836 3.0e-40 169.1 177 54.2
Thhalv10026376m.g Eutrema salsugineum HOM05D004607 ORTHO05D005836 6.8e-40 167.9 169 52.7
Lalb_Chr05g0229661 Lupinus albus HOM05D004607 ORTHO05D005836 8.9e-40 167.5 163 54.0
Haze_04009 Corylus avellana HOM05D004607 ORTHO05D005836 1.5e-39 166.8 146 61.0
AL7G38550 Arabidopsis lyrata HOM05D004607 ORTHO05D005836 2.0e-39 166.4 164 53.7
Glyma.09G198400 Glycine max HOM05D004607 ORTHO05D005836 2.0e-39 166.4 163 54.6
HanXRQChr09g0259831 Helianthus annuus HOM05D004607 ORTHO05D005836 4.4e-39 165.2 167 50.3
AT4G16444 Arabidopsis thaliana HOM05D004607 ORTHO05D005836 5.7e-39 164.9 164 53.0
Lj4g0003075 Lotus japonicus HOM05D004607 ORTHO05D005836 9.8e-39 164.1 163 54.0
Sp7g14990 Schrenkiella parvula HOM05D004607 ORTHO05D005836 1.3e-38 163.7 164 52.4
MBI11_g22240_MAGBIO Magnolia biondii HOM05D004607 ORTHO05D005836 2.2e-38 162.9 167 53.9
Migut.M00637 Erythranthe guttata HOM05D004607 ORTHO05D005836 2.9e-38 162.5 135 60.0
Medtr8g073600 Medicago truncatula HOM05D004607 ORTHO05D005836 2.9e-38 162.5 165 55.8
THA.LOC104819160 Tarenaya hassleriana HOM05D004607 ORTHO05D005836 2.9e-38 162.5 162 53.7
FvH4_1g10370 Fragaria vesca HOM05D004607 ORTHO05D005836 4.9e-38 161.8 176 53.4
Aa31LG2G12510 Aethionema arabicum HOM05D004607 ORTHO05D005836 6.4e-38 161.4 164 51.2
Peaxi162Scf00580g00027 Petunia axillaris HOM05D004607 ORTHO05D005836 6.4e-38 161.4 170 57.6
PGSC0003DMG400017476 Solanum tuberosum HOM05D004607 ORTHO05D005836 6.4e-38 161.4 84 91.7
A03p49830 Brassica napus HOM05D004607 ORTHO05D005836 8.3e-38 161.0 168 51.8
BolC7t45311H Brassica oleracea HOM05D004607 ORTHO05D005836 8.3e-38 161.0 166 51.8
BraA03t14078Z Brassica rapa HOM05D004607 ORTHO05D005836 8.3e-38 161.0 168 51.8
vmacro23502 Vaccinium macrocarpon HOM05D004607 ORTHO05D005836 8.3e-38 161.0 154 56.5
Haze_03657 Corylus avellana HOM05D004607 ORTHO05D005836 1.1e-37 160.6 146 58.9
Haze_03663 Corylus avellana HOM05D004607 ORTHO05D005836 1.1e-37 160.6 146 58.9
Os06g0198700 Oryza sativa ssp. japonica HOM05D004607 ORTHO05D005836 1.4e-37 160.2 165 50.3
Sed0016741 Sechium edule HOM05D004607 ORTHO05D005836 1.4e-37 160.2 131 61.8
Ca_02856_v3 Cicer arietinum L. HOM05D004607 ORTHO05D005836 1.8e-37 159.8 163 52.8
Zm00001eb320900 Zea mays HOM05D004607 ORTHO05D005836 1.8e-37 159.8 165 50.3
BcaC07g37988 Brassica carinata HOM05D004607 ORTHO05D005836 2.4e-37 159.5 165 52.7
A08p12190 Brassica napus HOM05D004607 ORTHO05D005836 3.2e-37 159.1 189 47.6
C07p47890 Brassica napus HOM05D004607 ORTHO05D005836 7.0e-37 157.9 167 52.1
Lsat_1_v5_gn_8_112021 Lactuca sativa HOM05D000005 ORTHO05D000012 7.0e-37 157.9 141 54.6
Sc16g0000240 Simmondsia chinensis HOM05D004607 ORTHO05D005836 9.2e-37 157.5 145 59.3
unitig_26.g9912 Utricularia gibba HOM05D004607 ORTHO05D005836 9.2e-37 157.5 165 50.9
EL10Ac3g05419 Beta vulgaris HOM05D004607 ORTHO05D005836 1.2e-36 157.1 146 60.3
SalBow7G0705 Salvia bowleyana HOM05D004607 ORTHO05D005836 2.0e-36 156.4 226 44.2
ECA246G3880 Erigeron canadensis HOM05D004607 ORTHO05D005836 4.6e-36 155.2 159 52.8
THA.LOC104826422 Tarenaya hassleriana HOM05D004607 ORTHO05D005836 5.9e-36 154.8 168 52.4
Zm00001eb373950 Zea mays HOM05D004607 ORTHO05D005836 1.0e-35 154.1 165 49.1
CAN.G328.18 Capsicum annuum HOM05D004607 ORTHO05D005836 2.3e-35 152.9 91 81.3
Glyma.01G158900 Glycine max HOM05D004607 ORTHO05D005836 2.3e-35 152.9 173 52.0
PSO761G0125 Papaver somniferum HOM05D004607 ORTHO05D005836 5.0e-35 151.8 172 50.0
PSO210G1290 Papaver somniferum HOM05D004607 ORTHO05D005836 1.9e-34 149.8 172 50.0
Ciclev10016602m.g Citrus clementina HOM05D004607 ORTHO05D005836 3.3e-34 149.1 166 50.6
SalBow7G2290 Salvia bowleyana HOM05D004607 ORTHO05D005836 3.3e-34 149.1 222 43.2
Phvul.003G269900 Phaseolus vulgaris HOM05D004607 ORTHO05D005836 4.3e-34 148.7 163 48.5
Glyma.11G085750 Glycine max HOM05D004607 ORTHO05D005836 7.3e-34 147.9 173 49.1
Thecc.01G005800 Theobroma cacao HOM05D004607 ORTHO05D005836 9.5e-34 147.5 144 54.9
Migut.N00197 Erythranthe guttata HOM05D004607 ORTHO05D005836 1.6e-33 146.7 159 50.3
Lalb_Chr09g0324751 Lupinus albus HOM05D004607 ORTHO05D005836 2.1e-33 146.4 168 48.2
TAR628G0874 Trochodendron aralioides HOM05D004607 ORTHO05D005836 2.1e-33 146.4 154 53.9
AUR62031422 Chenopodium quinoa HOM05D004607 ORTHO05D005836 2.8e-33 146.0 145 57.2
SalBow7G4137 Salvia bowleyana HOM05D004607 ORTHO05D005836 2.8e-33 146.0 230 41.7
ATR0807G168 Amborella trichopoda HOM05D004607 ORTHO05D005836 4.7e-33 145.2 164 46.3
Phvul.002G116550 Phaseolus vulgaris HOM05D004607 ORTHO05D005836 8.0e-33 144.4 173 48.6
CDE05G3414 Ceratophyllum demersum HOM05D004607 ORTHO05D005836 2.3e-32 142.9 135 53.3
ClCG10G000250 Citrullus lanatus HOM05D004607 ORTHO05D005836 4.0e-32 142.1 146 52.7
Duzib187G1597 Durio zibethinus HOM05D004607 ORTHO05D005836 4.0e-32 142.1 157 51.0
Aqoxy5G01013 Aquilegia oxysepala HOM05D004607 ORTHO05D005836 6.8e-32 141.4 144 52.1
SGA_v2.0_scaffold52G18984 Striga asiatica HOM05D004607 ORTHO05D005836 6.8e-32 141.4 146 51.4
Sabra05G0083700 Salix brachista HOM05D004607 ORTHO05D005836 1.2e-31 140.6 128 61.7
BcaNung00194 Brassica carinata HOM05D004607 ORTHO05D005836 1.5e-31 140.2 164 48.8
AUR62021120 Chenopodium quinoa HOM05D004607 ORTHO05D005836 2.0e-31 139.8 154 54.5
Hund00045 Selenicereus undatus HOM05D004607 ORTHO05D005836 2.0e-31 139.8 162 53.1
Lalb_Chr05g0214781 Lupinus albus HOM05D004607 ORTHO05D005836 3.4e-31 139.0 168 47.0
Psat4g104720 Pisum sativum HOM05D004607 ORTHO05D026060 5.8e-31 138.3 144 55.6
Lj2g0013322 Lotus japonicus HOM05D004607 ORTHO05D005836 9.8e-31 137.5 163 46.0
arahy.Tifrunner.gnm1.ann1.322DBQ Arachis hypogaea HOM05D004607 ORTHO05D005836 3.7e-30 135.6 170 44.7
arahy.Tifrunner.gnm1.ann1.WAU4HL Arachis hypogaea HOM05D004607 ORTHO05D005836 3.7e-30 135.6 170 44.7
Psat0s2561g0240 Pisum sativum HOM05D004607 ORTHO05D005836 1.1e-29 134.0 167 48.5
HPP92_002453 Vanilla planifolia HOM05D004607 ORTHO05D005836 1.4e-29 133.7 174 46.0
Atru.chr8.743 Acer truncatum HOM05D004607 ORTHO05D005836 1.2e-28 130.6 128 57.0
Manes.14G160966 Manihot esculenta HOM05D004607 ORTHO05D005836 6.0e-28 128.3 163 44.8
TPR.G33861 Trifolium pratense HOM05D004607 ORTHO05D005836 1.0e-27 127.5 168 46.4
Rhsim10G0196300 Rhododendron simsii HOM05D004607 ORTHO05D005836 3.0e-27 125.9 115 57.4
QL06p052929 Quercus lobata HOM05D004607 ORTHO05D005836 1.9e-26 123.2 86 64.0
TPR.G21990 Trifolium pratense HOM05D004607 ORTHO05D005836 9.5e-26 120.9 163 42.3
COL.COLO4_13415 Corchorus olitorius HOM05D004607 ORTHO05D005836 1.2e-25 120.6 128 52.3
ECA232G4775 Erigeron canadensis HOM05D004607 ORTHO05D005836 4.7e-25 118.6 148 43.9
Duzib264G0749 Durio zibethinus HOM05D004607 ORTHO05D005836 1.8e-24 116.7 128 50.0
CSS0045229 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 3.1e-24 115.9 168 43.5
MD15G1231800 Malus domestica HOM05D004607 ORTHO05D005836 8.9e-24 114.4 262 32.8
CDE05G1839 Ceratophyllum demersum HOM05D001594 ORTHO05D006997 2.0e-23 113.2 178 39.3
unitig_749.g13934 Utricularia gibba HOM05D004607 ORTHO05D005836 2.0e-23 113.2 133 46.6
SGA_v2.0_scaffold24G10477 Striga asiatica HOM05D004607 ORTHO05D005836 1.0e-19 100.9 163 33.1
TAR376G0723 Trochodendron aralioides HOM05D004607 ORTHO05D005836 5.6e-18 95.1 113 54.0
Pp3c7_8860 Physcomitrium patens HOM05D004607 ORTHO05D005836 1.8e-16 90.1 167 35.3
Mapoly0007s0238 Marchantia polymorpha HOM05D004607 ORTHO05D005836 5.2e-16 88.6 166 33.7
FAN23G1441 Fragaria x ananassa HOM05D004607 ORTHO05D005836 4.6e-12 75.5 85 56.5
AagrBONN_evm.TU.Sc2ySwM_362.230 Anthoceros agrestis HOM05D004607 ORTHO05D005836 2.3e-11 73.2 143 36.4
MELO3C013722.2 Cucumis melo HOM05D004607 ORTHO05D005836 3.0e-11 72.8 88 53.4
QL06p052933 Quercus lobata HOM05D004607 ORTHO05D005836 8.6e-11 71.2 76 59.2
Gohir.D06G180900 Gossypium hirsutum HOM05D004607 ORTHO05D005836 1.1e-10 70.9 75 56.0
Glyma.16G116500 Glycine max HOM05D004607 ORTHO05D005836 9.6e-10 67.8 82 52.4
Gohir.A06G172006 Gossypium hirsutum HOM05D004607 ORTHO05D005836 9.6e-10 67.8 75 53.3
Duzib147G0723 Durio zibethinus HOM05D004607 ORTHO05D005836 2.8e-09 66.2 75 54.7
VMungo1215G0163 Vigna mungo HOM05D004607 ORTHO05D005836 4.7e-09 65.5 107 44.9
Rhsim10G0196100 Rhododendron simsii HOM05D004607 ORTHO05D005836 6.2e-09 65.1 109 45.0
FAN19G1486 Fragaria x ananassa HOM05D004607 ORTHO05D005836 1.5e-07 60.5 52 67.3
CBR_g18647 Chara braunii HOM05D004607 ORTHO05D005836 5.8e-07 58.5 128 32.8
VMungo0251G1148 Vigna mungo HOM05D004607 ORTHO05D005836 4.9e-06 55.5 41 75.6


User provided reference genes

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