Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g038814.1 Solanum lycopersicum HOM05D001617 ORTHO05D008611 1.2e-100 369.8 185 100.0
Sopen02g012580 Solanum pennellii HOM05D001617 ORTHO05D008611 1.2e-100 369.8 185 100.0
Nitab4.5_0001365g0060 Nicotiana tabacum HOM05D001617 ORTHO05D008611 6.6e-94 347.4 188 93.6
PGSC0003DMG400017488 Solanum tuberosum HOM05D001617 ORTHO05D008611 5.2e-91 337.8 207 86.0
Nitab4.5_0000467g0050 Nicotiana tabacum HOM05D001617 ORTHO05D008611 2.0e-90 335.9 205 84.9
Peaxi162Scf00580g00110 Petunia axillaris HOM05D001617 ORTHO05D008611 1.7e-86 322.8 183 86.9
Dinv40191 Davidia involucrata HOM05D001617 ORTHO05D008611 5.3e-59 231.5 185 63.8
Hma1.2p1_0300F.1_g117970 Hydrangea macrophylla HOM05D001617 ORTHO05D008611 2.6e-58 229.2 185 63.2
TAR625G0652 Trochodendron aralioides HOM05D001617 ORTHO05D008611 8.7e-54 214.2 173 60.1
Actinidia17356 Actinidia chinensis HOM05D001617 ORTHO05D008611 1.5e-53 213.4 167 63.5
Actinidia22895 Actinidia chinensis HOM05D001617 ORTHO05D008611 2.5e-53 212.6 181 58.0
Nn5g30995 Nelumbo nucifera HOM05D001617 ORTHO05D008611 4.8e-52 208.4 175 59.4
Haze_03607 Corylus avellana HOM05D001617 ORTHO05D008611 1.1e-51 207.2 179 57.5
Cc07_g11900 Coffea canephora HOM05D001617 ORTHO05D008611 3.1e-51 205.7 179 60.3
CSS0049801 Camellia sinensis var. sinensis HOM05D001617 ORTHO05D008611 1.5e-50 203.4 177 57.6
Ciclev10026581m.g Citrus clementina HOM05D001617 ORTHO05D008611 5.9e-50 201.4 168 60.1
Lsat_1_v5_gn_7_41980 Lactuca sativa HOM05D001617 ORTHO05D008611 1.0e-49 200.7 182 54.4
MD15G1230700 Malus domestica HOM05D001617 ORTHO05D008611 2.9e-49 199.1 179 55.9
Potri.018G026700 Populus trichocarpa HOM05D001617 ORTHO05D008611 1.1e-48 197.2 178 56.2
CSS0040657 Camellia sinensis var. sinensis HOM05D001617 ORTHO05D008611 1.9e-48 196.4 177 57.1
Rhsim10G0195300 Rhododendron simsii HOM05D001617 ORTHO05D008611 5.5e-48 194.9 180 55.6
MD02G1114800 Malus domestica HOM05D001617 ORTHO05D008611 7.2e-48 194.5 180 53.9
Prupe.7G183400 Prunus persica HOM05D001617 ORTHO05D008611 1.2e-47 193.7 163 58.3
AT4G35530 Arabidopsis thaliana HOM05D001617 ORTHO05D008611 2.7e-47 192.6 185 55.7
HanXRQChr03g0061381 Helianthus annuus HOM05D001617 ORTHO05D008611 2.7e-47 192.6 181 53.0
CiPaw.08G181900 Carya illinoinensis HOM05D001617 ORTHO05D008611 4.6e-47 191.8 164 61.6
Atru.chr3.130 Acer truncatum HOM05D001617 ORTHO05D008611 7.9e-47 191.0 172 55.2
Glyma.01G158500 Glycine max HOM05D001617 ORTHO05D008611 7.9e-47 191.0 177 57.6
TPR.G27884 Trifolium pratense HOM05D001617 ORTHO05D008611 1.8e-46 189.9 179 55.3
Migut.H02499 Erythranthe guttata HOM05D001617 ORTHO05D008611 3.0e-46 189.1 182 54.9
Duzib147G0359 Durio zibethinus HOM05D001617 ORTHO05D008611 5.1e-46 188.3 181 54.7
PGR119G0287 Punica granatum HOM05D001617 ORTHO05D008611 5.1e-46 188.3 167 55.1
QL06p053003 Quercus lobata HOM05D001617 ORTHO05D008611 5.1e-46 188.3 162 58.6
Ca_24984_v3 Cicer arietinum L. HOM05D001617 ORTHO05D008611 8.7e-46 187.6 179 55.3
Glyma.11G086100 Glycine max HOM05D001617 ORTHO05D008611 8.7e-46 187.6 177 57.1
TPR.G24692 Trifolium pratense HOM05D001617 ORTHO05D008611 8.7e-46 187.6 177 55.9
Aqoxy6G01611 Aquilegia oxysepala HOM05D001617 ORTHO05D008611 1.9e-45 186.4 172 50.6
RcHm_v2.0_Chr2g0097101 Rosa chinensis HOM05D001617 ORTHO05D008611 1.9e-45 186.4 176 54.0
FAN19G1097 Fragaria x ananassa HOM05D001617 ORTHO05D002495 2.5e-45 186.0 176 53.4
Manes.03G014200 Manihot esculenta HOM05D001617 ORTHO05D008611 2.5e-45 186.0 172 54.1
Psat4g142640 Pisum sativum HOM05D001617 ORTHO05D008611 2.5e-45 186.0 179 54.2
AUR62003746 Chenopodium quinoa HOM05D001617 ORTHO05D008611 3.3e-45 185.7 172 51.2
FvH4_1g10271 Fragaria vesca HOM05D001617 ORTHO05D008611 4.3e-45 185.3 176 53.4
Sed0024019 Sechium edule HOM05D001617 ORTHO05D008611 5.7e-45 184.9 165 58.2
Lalb_Chr05g0214811 Lupinus albus HOM05D001617 ORTHO05D008611 7.4e-45 184.5 168 56.0
SGA_v2.0_scaffold280G46856 Striga asiatica HOM05D001617 ORTHO05D008611 9.7e-45 184.1 186 52.2
Thecc.01G005100 Theobroma cacao HOM05D001617 ORTHO05D008611 1.3e-44 183.7 179 53.6
Phvul.002G116800 Phaseolus vulgaris HOM05D001617 ORTHO05D008611 2.2e-44 183.0 163 57.7
Sabra06G0199600 Salix brachista HOM05D001617 ORTHO05D008611 2.2e-44 183.0 173 52.6
Carub.0007s0479 Capsella rubella HOM05D001617 ORTHO05D008611 2.8e-44 182.6 178 54.5
AL7G15630 Arabidopsis lyrata HOM05D001617 ORTHO05D008611 3.7e-44 182.2 178 53.4
Thhalv10026286m.g Eutrema salsugineum HOM05D001617 ORTHO05D008611 3.7e-44 182.2 186 52.7
Sc07g0001380 Simmondsia chinensis HOM05D001617 ORTHO05D008611 8.2e-44 181.0 169 52.7
arahy.Tifrunner.gnm1.ann1.00REGV Arachis hypogaea HOM05D001617 ORTHO05D008611 1.4e-43 180.3 169 54.4
arahy.Tifrunner.gnm1.ann1.P3NXZX Arachis hypogaea HOM05D001617 ORTHO05D008611 1.4e-43 180.3 169 54.4
AUR62002049 Chenopodium quinoa HOM05D001617 ORTHO05D008611 1.4e-43 180.3 176 50.0
ECA240G2496 Erigeron canadensis HOM05D001617 ORTHO05D008611 3.1e-43 179.1 169 51.5
Eucgr.I02221 Eucalyptus grandis HOM05D001617 ORTHO05D008611 3.1e-43 179.1 163 57.1
C07p61220 Brassica napus HOM05D001617 ORTHO05D008611 5.3e-43 178.3 174 54.0
BolC7t46548H Brassica oleracea HOM05D001617 ORTHO05D008611 5.3e-43 178.3 174 54.0
Lj2g0016890 Lotus japonicus HOM05D001617 ORTHO05D008611 5.3e-43 178.3 175 55.4
THA.LOC104819716 Tarenaya hassleriana HOM05D001617 ORTHO05D008611 5.3e-43 178.3 177 50.8
A01p03080 Brassica napus HOM05D001617 ORTHO05D008611 1.2e-42 177.2 179 51.4
CsaV3_3G000210 Cucumis sativus L. HOM05D001617 ORTHO05D008611 1.2e-42 177.2 170 52.9
Medtr7g006210 Medicago truncatula HOM05D001617 ORTHO05D008611 1.5e-42 176.8 165 55.2
BraA01t00292Z Brassica rapa HOM05D001617 ORTHO05D008611 3.4e-42 175.6 179 50.8
A03p63650 Brassica napus HOM05D001617 ORTHO05D008611 2.2e-41 172.9 163 53.4
BraA03t15436Z Brassica rapa HOM05D001617 ORTHO05D008611 2.2e-41 172.9 163 53.4
Lalb_Chr16g0380051 Lupinus albus HOM05D001617 ORTHO05D008611 6.5e-41 171.4 177 52.0
Potri.006G255301 Populus trichocarpa HOM05D001617 ORTHO05D008611 6.5e-41 171.4 172 52.9
PSO210G2591 Papaver somniferum HOM05D001617 ORTHO05D008611 1.9e-40 169.9 172 50.0
ATR0807G073 Amborella trichopoda HOM05D001617 ORTHO05D008611 3.2e-40 169.1 175 48.0
BcaNung03634 Brassica carinata HOM05D001617 ORTHO05D008611 3.2e-40 169.1 172 50.6
Aa31LG6G12490 Aethionema arabicum HOM05D001617 ORTHO05D008611 7.2e-40 167.9 176 50.6
Gohir.A02G178000 Gossypium hirsutum HOM05D001617 ORTHO05D008611 7.2e-40 167.9 171 52.0
Sp7g33310 Schrenkiella parvula HOM05D001617 ORTHO05D008611 7.2e-40 167.9 172 52.3
Gorai.003G002100 Gossypium raimondii HOM05D001617 ORTHO05D008611 1.2e-39 167.2 175 52.6
Gohir.D03G001800 Gossypium hirsutum HOM05D001617 ORTHO05D008611 1.6e-39 166.8 172 52.9
TWI09G0535 Tripterygium wilfordii HOM05D001617 ORTHO05D008611 2.1e-39 166.4 166 54.2
FAN23G1150 Fragaria x ananassa HOM05D001617 ORTHO05D002495 2.7e-39 166.0 211 43.1
GSVIVG01013391001 Vitis vinifera HOM05D001617 ORTHO05D008611 4.6e-39 165.2 171 50.3
SalBow8G0576 Salvia bowleyana HOM05D001617 ORTHO05D008611 8.8e-38 161.0 169 54.4
HPP92_001135 Vanilla planifolia HOM05D001617 ORTHO05D008611 3.3e-37 159.1 171 46.8
Os05g0165400 Oryza sativa ssp. japonica HOM05D001617 ORTHO05D008611 5.7e-37 158.3 171 48.0
ClCG10G000190 Citrullus lanatus HOM05D001617 ORTHO05D008611 7.4e-37 157.9 188 47.3
PSO761G0409 Papaver somniferum HOM05D001617 ORTHO05D008611 3.7e-36 155.6 172 46.5
VMungo1215G1547 Vigna mungo HOM05D004017 ORTHO05D004612 8.2e-36 154.5 174 50.0
Hund03599 Selenicereus undatus HOM05D001617 ORTHO05D008611 5.3e-35 151.8 186 48.9
CARHR243860 Cardamine hirsuta HOM05D001617 ORTHO05D008611 1.2e-34 150.6 105 65.7
Lj2g0001157 Lotus japonicus HOM05D001617 ORTHO05D008611 2.6e-34 149.4 116 64.7
TWI73G0916 Tripterygium wilfordii HOM05D001617 ORTHO05D008611 5.9e-34 148.3 166 49.4
CANSAT25G0226 Cannabis sativa HOM05D001617 ORTHO05D008611 2.9e-33 146.0 176 45.5
Medtr8g446540 Medicago truncatula HOM05D001617 ORTHO05D008611 2.9e-33 146.0 149 50.3
Zm00001eb123330 Zea mays HOM05D001617 ORTHO05D008611 2.9e-33 146.0 166 45.8
MELO3C013716.2 Cucumis melo HOM05D001617 ORTHO05D008611 7.2e-32 141.4 84 73.8
QL02p015100 Quercus lobata HOM05D001617 ORTHO05D008611 1.4e-30 137.1 155 44.5
COL.COLO4_22553 Corchorus olitorius HOM05D001617 ORTHO05D008611 3.3e-29 132.5 173 42.8
SEGI_30027 Sequoiadendron giganteum HOM05D001617 ORTHO05D008611 3.3e-29 132.5 168 42.9
BcaNung00584 Brassica carinata HOM05D001617 ORTHO05D008611 5.7e-29 131.7 175 44.0
EL10Ac6g15051 Beta vulgaris HOM05D001617 ORTHO05D008611 9.7e-29 131.0 221 36.7
Manes.03G014750 Manihot esculenta HOM05D001617 ORTHO05D008611 4.8e-28 128.6 167 47.3
Haze_22828 Corylus avellana HOM05D006218 ORTHO05D007338 7.0e-27 124.8 92 63.0
FAN26G0309 Fragaria x ananassa HOM05D001617 ORTHO05D002495 4.5e-26 122.1 83 68.7
unitig_46.g18791 Utricularia gibba HOM05D001617 ORTHO05D008611 4.5e-26 122.1 172 42.4
C01p03430 Brassica napus HOM05D001617 ORTHO05D008611 2.9e-25 119.4 188 41.5
BolC1t00330H Brassica oleracea HOM05D001617 ORTHO05D008611 2.9e-25 119.4 188 41.5
CDE05G1602 Ceratophyllum demersum HOM05D001617 ORTHO05D008611 8.5e-25 117.9 146 41.1
QL02p015033 Quercus lobata HOM05D001617 ORTHO05D008611 1.9e-24 116.7 159 40.3
SEGI_12529 Sequoiadendron giganteum HOM05D001617 ORTHO05D008611 5.5e-24 115.2 102 52.0
TAR381G0965 Trochodendron aralioides HOM05D001617 ORTHO05D008611 2.1e-23 113.2 77 66.2
Pp3c25_310 Physcomitrium patens HOM05D001617 ORTHO05D008611 1.8e-22 110.2 168 41.1
Mapoly0064s0006 Marchantia polymorpha HOM05D001617 ORTHO05D008611 2.6e-21 106.3 156 39.1
AagrBONN_evm.TU.Sc2ySwM_368.1506 Anthoceros agrestis HOM05D001617 ORTHO05D008611 6.3e-20 101.7 99 44.4
Os01g0166400 Oryza sativa ssp. japonica HOM05D001617 ORTHO05D008611 1.7e-17 93.6 76 55.3
Medtr7g005770 Medicago truncatula HOM05D001617 ORTHO05D008611 3.4e-13 79.3 67 58.2
arahy.Tifrunner.gnm1.ann1.JF0LYH Arachis hypogaea HOM05D001617 ORTHO05D008611 9.8e-13 77.8 58 65.5
FAN28G0538 Fragaria x ananassa HOM05D001617 ORTHO05D002495 8.3e-12 74.7 83 50.6
CBR_g38242 Chara braunii HOM05D001617 ORTHO05D008611 2.4e-11 73.2 138 34.1
SHI18558 Sapria himalayana HOM05D000291 ORTHO05D001358 9.1e-11 71.2 147 36.7


User provided reference genes

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