Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g038750.3 Solanum lycopersicum HOM05D004767 ORTHO05D005674 5.9e-200 700.7 355 100.0
Sopen02g012180 Solanum pennellii HOM05D004767 ORTHO05D005674 2.5e-198 695.3 355 98.9
PGSC0003DMG400003462 Solanum tuberosum HOM05D004767 ORTHO05D005674 2.1e-197 692.2 355 98.3
Peaxi162Scf00431g00415 Petunia axillaris HOM05D004767 ORTHO05D005674 2.5e-182 642.1 355 91.3
Nitab4.5_0000235g0120 Nicotiana tabacum HOM05D004767 ORTHO05D005674 6.8e-180 634.0 355 89.3
Nitab4.5_0006401g0010 Nicotiana tabacum HOM05D004767 ORTHO05D005674 2.0e-171 605.9 337 90.5
SGA_v2.0_scaffold108G30887 Striga asiatica HOM05D004767 ORTHO05D005674 1.0e-159 567.0 352 79.0
MSTRG.16702 Avicennia marina HOM05D004767 ORTHO05D005674 2.8e-157 558.9 352 78.1
Oeu010411.1 Olea europaea HOM05D004767 ORTHO05D005674 1.4e-156 556.6 352 78.4
Eucgr.H00074 Eucalyptus grandis HOM05D004767 ORTHO05D005674 5.1e-151 538.1 351 74.1
PGR102G1152 Punica granatum HOM05D004767 ORTHO05D005674 2.5e-150 535.8 353 74.8
TAR381G0314 Trochodendron aralioides HOM05D004767 ORTHO05D005674 3.6e-149 531.9 352 75.3
TAR625G0043 Trochodendron aralioides HOM05D004767 ORTHO05D005674 8.1e-149 530.8 353 74.5
Nn6g31627 Nelumbo nucifera HOM05D004767 ORTHO05D005674 5.4e-145 518.1 353 73.7
Cpa.g.sc365.7 Carica papaya HOM05D004767 ORTHO05D005674 7.1e-145 517.7 352 73.0
MD12G1063000 Malus domestica HOM05D004767 ORTHO05D005674 9.2e-145 517.3 351 71.8
Potri.004G095000 Populus trichocarpa HOM05D004767 ORTHO05D005674 1.2e-144 516.9 352 72.2
GSVIVG01017458001 Vitis vinifera HOM05D004767 ORTHO05D005674 2.1e-144 516.2 353 74.2
Glyma.10G129800 Glycine max HOM05D004767 ORTHO05D005674 3.5e-144 515.4 353 71.1
VMungo1127G0990 Vigna mungo HOM05D004767 ORTHO05D005674 6.0e-144 514.6 352 69.6
Lalb_Chr09g0324851 Lupinus albus HOM05D004767 ORTHO05D005674 3.9e-143 511.9 352 71.3
Prupe.7G070600 Prunus persica HOM05D004767 ORTHO05D005674 8.7e-143 510.8 351 69.8
Duzib264G0649 Durio zibethinus HOM05D004767 ORTHO05D005674 1.1e-142 510.4 353 71.7
Manes.02G116500 Manihot esculenta HOM05D004767 ORTHO05D005674 1.5e-142 510.0 353 72.2
Migut.B00408 Erythranthe guttata HOM05D004767 ORTHO05D005674 1.9e-142 509.6 344 73.8
GSVIVG01020926001 Vitis vinifera HOM05D004767 ORTHO05D005674 2.5e-142 509.2 353 73.4
Potri.017G120100 Populus trichocarpa HOM05D004767 ORTHO05D005674 5.6e-142 508.1 352 70.2
Cc07_g12190 Coffea canephora HOM05D004767 ORTHO05D005674 7.3e-142 507.7 289 85.1
CANSAT54G2063 Cannabis sativa HOM05D004767 ORTHO05D005674 1.2e-141 506.9 329 74.2
Lalb_Chr05g0214971 Lupinus albus HOM05D004767 ORTHO05D005674 3.6e-141 505.4 353 71.1
Gorai.012G034000 Gossypium raimondii HOM05D004767 ORTHO05D005674 1.8e-140 503.1 354 70.6
CiPaw.03G094400 Carya illinoinensis HOM05D004767 ORTHO05D005674 3.1e-140 502.3 352 70.2
Lj1g0021179 Lotus japonicus HOM05D004767 ORTHO05D005674 9.0e-140 500.7 355 68.2
TPR.G26773 Trifolium pratense HOM05D004767 ORTHO05D005674 2.0e-139 499.6 362 69.6
QL10p048860 Quercus lobata HOM05D004767 ORTHO05D005674 2.6e-139 499.2 351 68.9
Medtr4g111810 Medicago truncatula HOM05D004767 ORTHO05D005674 4.4e-139 498.4 360 68.1
Lj4C240T4 Lonicera japonica HOM05D004767 ORTHO05D005674 9.9e-139 497.3 356 73.0
SalBow6G2358 Salvia bowleyana HOM05D004767 ORTHO05D005674 2.9e-138 495.7 363 70.0
MD14G1063600 Malus domestica HOM05D004767 ORTHO05D005674 3.8e-138 495.4 353 69.4
Psat1g185000 Pisum sativum HOM05D004767 ORTHO05D005674 6.4e-138 494.6 360 68.6
Phvul.011G028400 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 8.4e-138 494.2 354 67.5
RcHm_v2.0_Chr3g0480691 Rosa chinensis HOM05D004767 ORTHO05D005674 8.4e-138 494.2 352 69.0
Thecc.01G130700 Theobroma cacao HOM05D004767 ORTHO05D005674 1.1e-137 493.8 329 72.9
Glyma.12G025800 Glycine max HOM05D004767 ORTHO05D005674 5.4e-137 491.5 352 69.0
TPR.G18695 Trifolium pratense HOM05D004767 ORTHO05D005674 5.4e-137 491.5 361 67.3
SalBow6G5765 Salvia bowleyana HOM05D004767 ORTHO05D005674 1.2e-136 490.3 363 69.7
COL.COLO4_35713 Corchorus olitorius HOM05D004767 ORTHO05D005674 3.5e-136 488.8 352 69.0
FAN09G1063 Fragaria x ananassa HOM05D004767 ORTHO05D005674 3.5e-136 488.8 351 68.4
TWI73G0530 Tripterygium wilfordii HOM05D004767 ORTHO05D005674 6.0e-136 488.0 351 68.9
FAN02G2069 Fragaria x ananassa HOM05D004767 ORTHO05D005674 1.0e-135 487.3 351 68.1
SalBow2G0232 Salvia bowleyana HOM05D004767 ORTHO05D005674 1.0e-135 487.3 352 70.5
Gohir.D04G022900 Gossypium hirsutum HOM05D004767 ORTHO05D005674 1.7e-135 486.5 354 68.9
FvH4_6g22900 Fragaria vesca HOM05D004767 ORTHO05D005674 3.9e-135 485.3 351 68.1
unitig_61.g26025 Utricularia gibba HOM05D004767 ORTHO05D005674 3.9e-135 485.3 355 66.5
DCAR_019301 Daucus carota HOM05D004767 ORTHO05D005674 5.1e-135 485.0 338 71.0
Gohir.A05G385700 Gossypium hirsutum HOM05D004767 ORTHO05D005674 8.7e-135 484.2 354 68.6
EL10Ac3g07307 Beta vulgaris HOM05D004767 ORTHO05D005674 1.5e-134 483.4 353 67.7
FAN14G1715 Fragaria x ananassa HOM05D004767 ORTHO05D005674 1.5e-134 483.4 351 67.8
Hund21306 Selenicereus undatus HOM05D004767 ORTHO05D005674 4.3e-134 481.9 312 74.0
THA.LOC104816808 Tarenaya hassleriana HOM05D004767 ORTHO05D005674 5.6e-134 481.5 357 67.8
Medtr4g077783 Medicago truncatula HOM05D004767 ORTHO05D005674 7.3e-134 481.1 336 69.9
HanXRQChr15g0489741 Helianthus annuus HOM05D004767 ORTHO05D005674 4.8e-133 478.4 354 68.1
THA.LOC104820618 Tarenaya hassleriana HOM05D004767 ORTHO05D005674 1.8e-132 476.5 355 65.9
PSO017G2362 Papaver somniferum HOM05D004767 ORTHO05D005674 1.2e-131 473.8 354 68.4
EL10Ac8g19950 Beta vulgaris HOM05D004767 ORTHO05D005674 1.5e-131 473.4 311 72.0
Sc03g0004110 Simmondsia chinensis HOM05D004767 ORTHO05D005674 3.4e-131 472.2 354 67.2
Hma1.2p1_0085F.1_g044390 Hydrangea macrophylla HOM05D004767 ORTHO05D005674 5.8e-131 471.5 375 66.9
Aqoxy6G02991 Aquilegia oxysepala HOM05D004767 ORTHO05D005674 7.6e-131 471.1 355 66.5
Sabra17G0099100 Salix brachista HOM05D004767 ORTHO05D005674 1.3e-130 470.3 361 66.2
arahy.Tifrunner.gnm1.ann1.AK1NBZ Arachis hypogaea HOM05D004767 ORTHO05D005674 3.8e-130 468.8 356 67.1
Sed0012135 Sechium edule HOM05D004767 ORTHO05D005674 8.4e-130 467.6 316 72.8
ECA233G4977 Erigeron canadensis HOM05D004767 ORTHO05D005674 3.2e-129 465.7 355 67.0
arahy.Tifrunner.gnm1.ann1.BE8FK9 Arachis hypogaea HOM05D004767 ORTHO05D005674 7.1e-129 464.5 406 60.3
Ca_02533_v3 Cicer arietinum L. HOM05D004767 ORTHO05D005674 7.1e-129 464.5 361 64.8
Sed0020265 Sechium edule HOM05D004767 ORTHO05D005674 7.1e-129 464.5 312 71.5
AUR62012542 Chenopodium quinoa HOM05D004767 ORTHO05D005674 3.5e-128 462.2 289 76.1
Rhsim08G0026000 Rhododendron simsii HOM05D004767 ORTHO05D005674 1.0e-127 460.7 375 65.1
TAR625G0966 Trochodendron aralioides HOM05D004767 ORTHO05D005674 6.7e-127 458.0 332 69.9
AT2G34260 Arabidopsis thaliana HOM05D004767 ORTHO05D005674 8.7e-127 457.6 313 70.3
Actinidia28754 Actinidia chinensis HOM05D004767 ORTHO05D005674 1.1e-126 457.2 357 67.5
COL.COLO4_38041 Corchorus olitorius HOM05D004767 ORTHO05D005674 1.1e-126 457.2 310 72.3
Carub.0004s1593 Capsella rubella HOM05D004767 ORTHO05D005674 7.4e-126 454.5 313 70.0
CARHR128360 Cardamine hirsuta HOM05D004767 ORTHO05D005674 7.4e-126 454.5 313 69.0
Aa31LG9G14020 Aethionema arabicum HOM05D004767 ORTHO05D005674 1.6e-125 453.4 355 63.7
Sp4g16550 Schrenkiella parvula HOM05D004767 ORTHO05D005674 1.1e-124 450.7 297 71.0
BcaC02g11487 Brassica carinata HOM05D004767 ORTHO05D005674 1.4e-124 450.3 311 68.8
BolC4t23059H Brassica oleracea HOM05D004767 ORTHO05D005674 1.8e-124 449.9 311 68.8
C04p14860 Brassica napus HOM05D004767 ORTHO05D005674 2.4e-124 449.5 311 68.8
ClCG10G013460 Citrullus lanatus HOM05D004767 ORTHO05D005674 2.4e-124 449.5 315 69.2
CDE08G0085 Ceratophyllum demersum HOM05D004767 ORTHO05D005674 4.0e-124 448.7 300 69.3
C04p63650 Brassica napus HOM05D004767 ORTHO05D005674 3.4e-123 445.7 299 70.2
vmacro18476 Vaccinium macrocarpon HOM05D004767 ORTHO05D005674 3.4e-123 445.7 331 68.3
BcaB06g28745 Brassica carinata HOM05D004767 ORTHO05D005674 7.6e-123 444.5 312 68.3
A05p11370 Brassica napus HOM05D004767 ORTHO05D005674 2.2e-122 443.0 311 68.5
BraA05t20086Z Brassica rapa HOM05D004767 ORTHO05D005674 2.2e-122 443.0 311 68.5
BraA04t18130Z Brassica rapa HOM05D004767 ORTHO05D005674 3.8e-122 442.2 299 69.6
Atru.chr5.1742 Acer truncatum HOM05D004767 ORTHO05D005674 4.9e-122 441.8 352 64.2
BcaB02g09562 Brassica carinata HOM05D004767 ORTHO05D005674 1.4e-121 440.3 352 61.4
Lsat_1_v5_gn_8_114040 Lactuca sativa HOM05D004767 ORTHO05D005674 4.2e-121 438.7 343 65.6
CDE02G0197 Ceratophyllum demersum HOM05D004767 ORTHO05D005674 5.5e-121 438.3 355 62.0
PSO170G0853 Papaver somniferum HOM05D004767 ORTHO05D005674 4.3e-118 428.7 353 63.5
Psat1g210160 Pisum sativum HOM05D004767 ORTHO05D005674 2.4e-116 422.9 272 74.3
Os07g0660700 Oryza sativa ssp. japonica HOM05D004767 ORTHO05D005674 5.3e-116 421.8 350 59.7
MELO3C026614.2 Cucumis melo HOM05D004767 ORTHO05D005674 3.4e-115 419.1 299 67.9
HPP92_003941 Vanilla planifolia HOM05D004767 ORTHO05D005674 2.9e-114 416.0 355 59.7
RcHm_v2.0_Chr4g0410631 Rosa chinensis HOM05D004767 ORTHO05D005674 3.8e-114 415.6 353 60.9
Thhalv10016919m.g Eutrema salsugineum HOM05D004767 ORTHO05D005674 5.7e-110 401.7 299 64.9
Lj3A907T66 Lonicera japonica HOM05D004767 ORTHO05D005674 2.2e-109 399.8 369 57.2
Zm00001eb349300 Zea mays HOM05D004767 ORTHO05D005674 2.2e-109 399.8 354 56.2
AL4G30210 Arabidopsis lyrata HOM05D004767 ORTHO05D005674 3.7e-109 399.1 365 57.5
Dinv40217 Davidia involucrata HOM05D004767 ORTHO05D005674 4.8e-109 398.7 230 84.3
CSS0049016 Camellia sinensis var. sinensis HOM05D004767 ORTHO05D005674 9.0e-108 394.4 285 71.6
Mapoly0040s0029 Marchantia polymorpha HOM05D004767 ORTHO05D005674 4.3e-102 375.6 328 55.5
Haze_03669 Corylus avellana HOM05D004767 ORTHO05D005674 2.2e-98 363.2 306 62.1
CsaV3_3G043180 Cucumis sativus L. HOM05D004767 ORTHO05D005674 4.2e-97 359.0 321 57.3
AagrBONN_evm.TU.Sc2ySwM_344.1647 Anthoceros agrestis HOM05D004767 ORTHO05D005674 1.2e-96 357.5 299 56.2
AUR62014654 Chenopodium quinoa HOM05D004767 ORTHO05D005674 1.6e-96 357.1 312 59.3
Glyma.11G099900 Glycine max HOM05D004767 ORTHO05D005674 7.9e-96 354.8 301 58.8
Ah.09g236950 Amaranthus hybridus HOM05D004767 ORTHO05D005674 2.6e-94 349.7 319 56.7
AUR62044118 Chenopodium quinoa HOM05D004767 ORTHO05D005674 2.6e-91 339.7 289 60.9
A04p26260 Brassica napus HOM05D004767 ORTHO05D005674 1.7e-90 337.0 204 75.5
Phvul.005G015600 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 2.9e-90 336.3 307 55.4
Phvul.005G015700 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 1.9e-89 333.6 303 55.1
SMO364G0336 Selaginella moellendorffii HOM05D004767 ORTHO05D005674 1.8e-87 327.0 356 49.2
Cfa006688 Carpinus fangiana HOM05D004767 ORTHO05D005674 1.5e-86 323.9 266 63.2
CBR_g37537 Chara braunii HOM05D004767 ORTHO05D005674 2.4e-76 290.0 330 44.2
MCO07G146 Micromonas commoda HOM05D004767 ORTHO05D005674 5.5e-65 252.3 321 41.1
Medtr1g076780 Medicago truncatula HOM05D004767 ORTHO05D005674 3.9e-58 229.6 156 70.5
Glyma.20G080900 Glycine max HOM05D004767 ORTHO05D005674 5.6e-57 225.7 144 73.6
SHI13610 Sapria himalayana HOM05D004767 ORTHO05D005674 3.2e-52 209.9 267 42.3
Oeu036465.1 Olea europaea HOM05D004767 ORTHO05D005674 3.5e-51 206.5 286 47.2
SEGI_28078 Sequoiadendron giganteum HOM05D004767 ORTHO05D005674 7.8e-51 205.3 164 61.0
ATR0680G041 Amborella trichopoda HOM05D004767 ORTHO05D005674 6.8e-47 192.2 155 58.7
PRCOL_00000722 Prasinoderma coloniale HOM05D004767 ORTHO05D005674 6.8e-47 192.2 294 39.1
Cre02.g113250 Chlamydomonas reinhardtii HOM05D004767 ORTHO05D005674 1.2e-43 181.4 254 40.2
Pp3c5_17020 Physcomitrium patens HOM05D004767 ORTHO05D005674 2.1e-43 180.6 309 36.2
Psat6g227720 Pisum sativum HOM05D004767 ORTHO05D005674 1.5e-41 174.5 145 61.4
Psat6g227760 Pisum sativum HOM05D004767 ORTHO05D005674 1.8e-39 167.5 140 61.4
Phvul.011G028501 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 2.4e-36 157.1 114 64.0
QL07p001807 Quercus lobata HOM05D004767 ORTHO05D005674 3.1e-31 140.2 153 47.7
ATR0231G001 Amborella trichopoda HOM05D004767 ORTHO05D005674 2.4e-28 130.6 114 58.8
BolC4t27833H Brassica oleracea HOM05D004767 ORTHO05D005674 4.6e-27 126.3 305 32.5
Sabra17G0099200 Salix brachista HOM05D004767 ORTHO05D005674 2.6e-22 110.5 77 66.2
SEGI_20710 Sequoiadendron giganteum HOM05D004767 ORTHO05D005674 1.7e-21 107.8 95 53.7
SEGI_27353 Sequoiadendron giganteum HOM05D004767 ORTHO05D005674 4.0e-15 86.7 73 56.2
Lsat_1_v5_gn_6_103760 Lactuca sativa HOM05D004767 ORTHO05D005674 7.6e-14 82.4 66 60.6
Phvul.011G028300 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 1.3e-13 81.6 161 34.8
vmacro07517 Vaccinium macrocarpon HOM05D004767 ORTHO05D005674 1.3e-13 81.6 54 70.4
GSVIVG01020113001 Vitis vinifera HOM05D004767 ORTHO05D005674 3.8e-13 80.1 53 73.6
Actinidia09820 Actinidia chinensis HOM05D004767 ORTHO05D005674 4.9e-13 79.7 57 64.9
Cc11_g01130 Coffea canephora HOM05D004767 ORTHO05D005674 5.5e-12 76.3 45 77.8
Cc11_g01140 Coffea canephora HOM05D004767 ORTHO05D005674 6.0e-11 72.8 43 72.1
Haze_27084 Corylus avellana HOM05D002303 ORTHO05D007639 8.7e-10 68.9 286 22.7
Eucgr.L00018 Eucalyptus grandis HOM05D005323 ORTHO05D006820 3.7e-08 63.5 175 21.1
RcHm_v2.0_Chr5g0032061 Rosa chinensis HOM05D004767 ORTHO05D005674 9.0e-07 58.9 35 68.6
Actinidia28377 Actinidia chinensis HOM05D005323 ORTHO05D006820 1.5e-06 58.2 163 23.9
arahy.Tifrunner.gnm1.ann1.0Z7T57 Arachis hypogaea HOM05D003913 ORTHO05D004803 4.5e-06 56.6 126 29.4


User provided reference genes

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