Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g038680.1 Solanum lycopersicum HOM05D005467 ORTHO05D006523 7.3e-239 830.5 522 100.0
Sopen02g012000 Solanum pennellii HOM05D005467 ORTHO05D006523 4.9e-227 791.2 547 92.9
Sopen02g012020 Solanum pennellii HOM05D005467 ORTHO05D006523 6.7e-160 568.2 470 66.0
Sopen02g012010 Solanum pennellii HOM05D005467 ORTHO05D006523 2.9e-155 552.7 468 70.1
PGSC0003DMG400017873 Solanum tuberosum HOM05D005467 ORTHO05D006523 1.8e-136 490.3 423 61.5
Solyc02g038670.3 Solanum lycopersicum HOM05D005467 ORTHO05D006523 5.0e-131 472.2 454 63.7
PGSC0003DMG400029189 Solanum tuberosum HOM05D005467 ORTHO05D006523 1.6e-129 467.2 467 58.7
Peaxi162Scf00159g00823 Petunia axillaris HOM05D005467 ORTHO05D006523 1.1e-112 411.4 494 48.8
Solyc02g038650.1 Solanum lycopersicum HOM05D005467 ORTHO05D006523 6.6e-107 392.1 403 56.8
Peaxi162Scf00205g00928 Petunia axillaris HOM05D005467 ORTHO05D006523 1.1e-85 321.6 422 41.7
Nitab4.5_0000350g0200 Nicotiana tabacum HOM05D005467 ORTHO05D006523 1.3e-81 308.1 400 41.8
CAN.G1489.4 Capsicum annuum HOM05D005467 ORTHO05D006523 1.6e-81 307.8 415 41.4
TWI31G0476 Tripterygium wilfordii HOM05D005467 ORTHO05D006523 2.8e-81 307.0 423 40.4
Thecc.02G211500 Theobroma cacao HOM05D005467 ORTHO05D006523 4.8e-81 306.2 423 39.5
Ciclev10015390m.g Citrus clementina HOM05D005467 ORTHO05D006523 6.2e-81 305.8 422 40.3
Sopen05g004250 Solanum pennellii HOM05D005467 ORTHO05D006523 1.8e-80 304.3 415 41.7
Sopen02g012080 Solanum pennellii HOM05D005467 ORTHO05D006523 2.4e-80 303.9 458 48.3
RcHm_v2.0_Chr4g0433781 Rosa chinensis HOM05D005467 ORTHO05D006523 3.1e-80 303.5 411 41.8
Gorai.012G123600 Gossypium raimondii HOM05D005467 ORTHO05D006523 6.9e-80 302.4 424 40.1
Potri.010G116200 Populus trichocarpa HOM05D005467 ORTHO05D006523 6.9e-80 302.4 422 40.8
PGR119G0286 Punica granatum HOM05D005467 ORTHO05D006523 6.9e-80 302.4 419 39.9
CSS0047900 Camellia sinensis var. sinensis HOM05D005467 ORTHO05D006523 9.0e-80 302.0 414 40.1
Cfa008565 Carpinus fangiana HOM05D005467 ORTHO05D006523 9.0e-80 302.0 415 39.8
Manes.06G062500 Manihot esculenta HOM05D005467 ORTHO05D006523 1.2e-79 301.6 422 40.0
Gohir.A04G099200 Gossypium hirsutum HOM05D005467 ORTHO05D006523 1.5e-79 301.2 424 40.3
Nn3g18021 Nelumbo nucifera HOM05D005467 ORTHO05D006523 1.5e-79 301.2 419 39.1
HanXRQChr15g0477671 Helianthus annuus HOM05D005467 ORTHO05D006523 2.0e-79 300.8 415 40.5
Solyc02g038660.3 Solanum lycopersicum HOM05D005467 ORTHO05D006523 4.5e-79 299.7 376 48.4
GSVIVG01011792001 Vitis vinifera HOM05D005467 ORTHO05D006523 5.8e-79 299.3 415 40.5
Lj5g0001822 Lotus japonicus HOM05D005467 ORTHO05D006523 9.9e-79 298.5 420 39.3
Solyc05g008420.4 Solanum lycopersicum HOM05D005467 ORTHO05D006523 1.3e-78 298.1 409 41.8
TAR629G1677 Trochodendron aralioides HOM05D005467 ORTHO05D006523 2.2e-78 297.4 417 39.3
FvH4_4g26200 Fragaria vesca HOM05D005467 ORTHO05D006523 2.9e-78 297.0 411 40.6
Actinidia14942 Actinidia chinensis HOM05D005467 ORTHO05D006523 3.2e-77 293.5 414 39.6
MD16G1031500 Malus domestica HOM05D005467 ORTHO05D006523 3.2e-77 293.5 422 38.6
FAN07G0694 Fragaria x ananassa HOM05D005467 ORTHO05D006523 4.2e-77 293.1 411 40.4
Phvul.007G035400 Phaseolus vulgaris HOM05D005467 ORTHO05D006523 4.2e-77 293.1 419 38.7
ECA246G2902 Erigeron canadensis HOM05D005467 ORTHO05D006523 1.2e-76 291.6 412 40.3
Hma1.2p1_0114F.1_g055340 Hydrangea macrophylla HOM05D005467 ORTHO05D006523 2.1e-76 290.8 433 37.9
TPR.G4835 Trifolium pratense HOM05D005467 ORTHO05D006523 2.1e-76 290.8 419 38.9
arahy.Tifrunner.gnm1.ann1.U1J3BU Arachis hypogaea HOM05D005467 ORTHO05D006523 2.7e-76 290.4 419 38.9
Eucgr.G02222 Eucalyptus grandis HOM05D005467 ORTHO05D006523 2.7e-76 290.4 419 39.1
Glyma.10G266400 Glycine max HOM05D005467 ORTHO05D006523 6.0e-76 289.3 419 38.7
CANSAT01G3134 Cannabis sativa HOM05D005467 ORTHO05D006523 1.0e-75 288.5 420 37.1
CiPaw.05G246600 Carya illinoinensis HOM05D005467 ORTHO05D006523 1.0e-75 288.5 419 38.4
Glyma.20G124100 Glycine max HOM05D005467 ORTHO05D006523 3.9e-75 286.6 419 38.7
PSO063G5439 Papaver somniferum HOM05D005467 ORTHO05D006523 3.9e-75 286.6 423 37.4
Sabra10G0087600 Salix brachista HOM05D005467 ORTHO05D006523 5.1e-75 286.2 450 38.2
VMungo0720G1946 Vigna mungo HOM05D005467 ORTHO05D006523 8.7e-75 285.4 419 37.7
Migut.L00826 Erythranthe guttata HOM05D005467 ORTHO05D006523 1.1e-74 285.0 415 39.8
PGSC0003DMG400029188 Solanum tuberosum HOM05D005467 ORTHO05D006523 1.1e-74 285.0 457 41.1
Migut.L00653 Erythranthe guttata HOM05D005467 ORTHO05D006523 1.5e-74 284.6 415 39.5
Sabra10G0086000 Salix brachista HOM05D005467 ORTHO05D006523 1.9e-74 284.3 453 37.7
Sed0008724 Sechium edule HOM05D005467 ORTHO05D006523 1.9e-74 284.3 412 38.1
Aqoxy3G00153 Aquilegia oxysepala HOM05D005467 ORTHO05D006523 2.5e-74 283.9 415 37.8
arahy.Tifrunner.gnm1.ann1.F0PHAM Arachis hypogaea HOM05D005467 ORTHO05D006523 3.3e-74 283.5 442 37.8
PSO782G0553 Papaver somniferum HOM05D005467 ORTHO05D006523 4.3e-74 283.1 424 37.5
DCAR_007277 Daucus carota HOM05D005467 ORTHO05D006523 5.6e-74 282.7 415 38.1
MBI10_g46301_MAGBIO Magnolia biondii HOM05D005467 ORTHO05D006523 5.6e-74 282.7 351 42.7
Psat6g222960 Pisum sativum HOM05D005467 ORTHO05D006523 9.6e-74 282.0 420 38.1
Prupe.1G321400 Prunus persica HOM05D005467 ORTHO05D006523 9.6e-74 282.0 352 43.2
Medtr1g108650 Medicago truncatula HOM05D005467 ORTHO05D006523 2.8e-73 280.4 414 38.2
Rhsim09G0101300 Rhododendron simsii HOM05D005467 ORTHO05D006523 2.8e-73 280.4 456 36.0
Lalb_Chr21g0308561 Lupinus albus HOM05D005467 ORTHO05D006523 3.1e-72 276.9 419 37.2
CsaV3_5G034840 Cucumis sativus L. HOM05D005467 ORTHO05D006523 1.0e-70 271.9 415 37.6
QL01p002615 Quercus lobata HOM05D005467 ORTHO05D006523 1.7e-70 271.2 498 33.7
Lj6C750G3 Lonicera japonica HOM05D005467 ORTHO05D006523 6.5e-70 269.2 419 37.9
Duzib248G1088 Durio zibethinus HOM05D005467 ORTHO05D006523 4.2e-69 266.5 421 37.8
Os01g0506200 Oryza sativa ssp. japonica HOM05D005467 ORTHO05D006523 4.2e-69 266.5 413 35.8
Atru.chr11.358 Acer truncatum HOM05D005467 ORTHO05D006523 7.1e-69 265.8 378 39.4
Ah.02g128100 Amaranthus hybridus HOM05D005467 ORTHO05D006523 3.0e-67 260.4 425 36.5
AUR62014129 Chenopodium quinoa HOM05D005467 ORTHO05D006523 8.7e-67 258.8 425 36.2
ClCG05G022280 Citrullus lanatus HOM05D005467 ORTHO05D006523 1.3e-65 255.0 366 38.5
FAN12G3855 Fragaria x ananassa HOM05D005467 ORTHO05D006523 3.1e-64 250.4 411 37.2
FAN12G1869 Fragaria x ananassa HOM05D005467 ORTHO05D006523 9.0e-64 248.8 411 37.2
Cpa.g.sc65.104 Carica papaya HOM05D005467 ORTHO05D006523 2.0e-63 247.7 423 35.0
Peaxi162Scf00159g00824 Petunia axillaris HOM05D005467 ORTHO05D006523 2.6e-63 247.3 199 62.3
Nitab4.5_0000293g0010 Nicotiana tabacum HOM05D005467 ORTHO05D006523 4.5e-63 246.5 423 35.2
Ca_11108_v3 Cicer arietinum L. HOM05D005467 ORTHO05D006523 1.0e-62 245.4 414 35.0
SGA_v2.0_scaffold50G18532 Striga asiatica HOM05D005467 ORTHO05D006523 3.2e-61 240.4 446 35.0
TAR622G1271 Trochodendron aralioides HOM05D005467 ORTHO05D006523 1.2e-60 238.4 340 39.4
AUR62039552 Chenopodium quinoa HOM05D005467 ORTHO05D006523 4.6e-60 236.5 404 35.1
PGSC0003DMG400023165 Solanum tuberosum HOM05D005467 ORTHO05D006523 3.9e-59 233.4 190 72.1
Hund24998 Selenicereus undatus HOM05D005467 ORTHO05D006523 1.5e-58 231.5 415 35.4
Nitab4.5_0000350g0270 Nicotiana tabacum HOM05D005467 ORTHO05D006523 9.7e-58 228.8 423 33.6
Gohir.D04G138566 Gossypium hirsutum HOM05D005467 ORTHO05D006523 1.6e-57 228.0 287 42.9
PGSC0003DMG400017876 Solanum tuberosum HOM05D005467 ORTHO05D006523 2.2e-57 227.6 405 42.5
Lsat_1_v5_gn_3_54101 Lactuca sativa HOM05D005467 ORTHO05D006523 2.8e-57 227.3 286 43.7
Cc11_g09130 Coffea canephora HOM05D005467 ORTHO05D006523 2.4e-56 224.2 274 43.1
unitig_21.g20024 Utricularia gibba HOM05D000903 ORTHO05D000731 5.9e-55 219.5 414 33.3
ATR0041G011 Amborella trichopoda HOM05D005467 ORTHO05D006523 5.0e-54 216.5 430 32.3
MSTRG.879 Avicennia marina HOM05D005467 ORTHO05D006523 6.1e-52 209.5 359 35.1
Solyc02g038700.3 Solanum lycopersicum HOM05D005467 ORTHO05D006523 1.4e-51 208.4 272 51.5
Gohir.D04G138632 Gossypium hirsutum HOM05D005467 ORTHO05D006523 4.3e-50 203.4 346 35.8
MELO3C012295.2 Cucumis melo HOM05D005467 ORTHO05D006523 7.4e-50 202.6 360 34.4
vmacro10622 Vaccinium macrocarpon HOM05D005467 ORTHO05D006523 7.4e-50 202.6 430 32.1
SMO172G0164 Selaginella moellendorffii HOM05D005467 ORTHO05D006523 1.4e-48 198.4 406 30.3
Dinv05879 Davidia involucrata HOM05D005467 ORTHO05D006523 1.0e-46 192.2 330 35.8
Nitab4.5_0004524g0030 Nicotiana tabacum HOM05D005467 ORTHO05D006523 7.2e-45 186.0 266 39.5
AagrBONN_evm.TU.Sc2ySwM_344.4352 Anthoceros agrestis HOM05D005467 ORTHO05D006523 9.7e-42 175.6 411 28.5
FAN17G2566 Fragaria x ananassa HOM05D005467 ORTHO05D006523 2.2e-41 174.5 199 45.7
Zm00001eb341680 Zea mays HOM05D005467 ORTHO05D006523 8.2e-41 172.6 310 31.3
HPP92_008650 Vanilla planifolia HOM05D005467 ORTHO05D006523 3.1e-40 170.6 271 33.6
Sc04g0005780 Simmondsia chinensis HOM05D005467 ORTHO05D006523 3.5e-39 167.2 261 37.5
Pp3c22_2590 Physcomitrium patens HOM05D005467 ORTHO05D006523 8.8e-35 152.5 340 28.2
PGSC0003DMG400017875 Solanum tuberosum HOM05D005467 ORTHO05D006523 1.2e-31 142.1 77 85.7
Nitab4.5_0004524g0050 Nicotiana tabacum HOM05D005467 ORTHO05D006523 5.5e-29 133.3 115 53.9
Peaxi162Scf00205g00812 Petunia axillaris HOM05D005467 ORTHO05D006523 7.2e-29 132.9 406 25.4
MCO12G173 Micromonas commoda HOM05D005467 ORTHO05D006523 4.7e-28 130.2 345 28.7
Nitab4.5_0004367g0150 Nicotiana tabacum HOM05D005467 ORTHO05D006523 1.0e-27 129.0 128 48.4
Nitab4.5_0002820g0080 Nicotiana tabacum HOM05D005467 ORTHO05D006523 3.0e-27 127.5 125 48.8
CDE06G2222 Ceratophyllum demersum HOM05D005467 ORTHO05D006523 4.0e-27 127.1 217 35.0
SEGI_12457 Sequoiadendron giganteum HOM05D005467 ORTHO05D006523 4.1e-24 117.1 250 30.4
Oeu064202.3 Olea europaea HOM05D005467 ORTHO05D006523 9.4e-21 105.9 270 28.9
PGSC0003DMG400038827 Solanum tuberosum HOM05D005467 ORTHO05D006523 1.5e-18 98.6 168 37.5
FAN17G1461 Fragaria x ananassa HOM05D005467 ORTHO05D006523 2.4e-16 91.3 127 40.2
Lsat_1_v5_gn_7_58700 Lactuca sativa HOM05D005467 ORTHO05D006523 1.9e-13 81.6 102 40.2
Lsat_1_v5_gn_4_96160 Lactuca sativa HOM05D005467 ORTHO05D006523 7.2e-13 79.7 96 41.7
Haze_11050 Corylus avellana HOM05D005467 ORTHO05D006523 3.6e-12 77.4 177 29.9
Nitab4.5_0019054g0020 Nicotiana tabacum HOM05D005467 ORTHO05D006523 8.0e-12 76.3 198 27.3
RcHm_v2.0_Chr7g0235151 Rosa chinensis HOM05D005467 ORTHO05D006523 2.3e-11 74.7 85 42.4
Cc11_g09120 Coffea canephora HOM05D005467 ORTHO05D006523 4.0e-11 73.9 135 34.1
Sopen02g012660 Solanum pennellii HOM05D000004 ORTHO05D000002 4.0e-11 73.9 61 62.3
CDE07G1108 Ceratophyllum demersum HOM05D005467 ORTHO05D006523 5.2e-11 73.6 74 41.9
Haze_11049 Corylus avellana HOM05D005467 ORTHO05D006523 8.9e-11 72.8 151 29.8
Solyc02g062200.1 Solanum lycopersicum HOM05D005467 ORTHO05D006523 5.7e-10 70.1 254 29.9
Nitab4.5_0000688g0010 Nicotiana tabacum HOM05D005467 ORTHO05D006523 2.2e-09 68.2 177 32.2
Nitab4.5_0002820g0070 Nicotiana tabacum HOM05D005467 ORTHO05D006523 7.0e-08 63.2 133 27.1
RcHm_v2.0_Chr3g0493761 Rosa chinensis HOM05D005467 ORTHO05D006523 2.0e-07 61.6 64 48.4


User provided reference genes

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