Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g038670.3 Solanum lycopersicum HOM05D005467 ORTHO05D006523 2.3e-229 799.3 667 100.0
Sopen02g012010 Solanum pennellii HOM05D005467 ORTHO05D006523 3.7e-203 712.2 723 88.4
Sopen02g012000 Solanum pennellii HOM05D005467 ORTHO05D006523 1.5e-140 504.2 469 64.4
Sopen02g012020 Solanum pennellii HOM05D005467 ORTHO05D006523 7.3e-135 485.3 466 60.1
Solyc02g038680.1 Solanum lycopersicum HOM05D005467 ORTHO05D006523 7.1e-130 468.8 454 63.7
PGSC0003DMG400017873 Solanum tuberosum HOM05D005467 ORTHO05D006523 5.4e-122 442.6 446 55.6
PGSC0003DMG400029189 Solanum tuberosum HOM05D005467 ORTHO05D006523 4.6e-105 386.3 467 53.3
Peaxi162Scf00159g00823 Petunia axillaris HOM05D005467 ORTHO05D006523 2.5e-103 380.6 495 47.9
Solyc02g038650.1 Solanum lycopersicum HOM05D005467 ORTHO05D006523 3.9e-88 330.1 496 44.6
Sopen02g012080 Solanum pennellii HOM05D005467 ORTHO05D006523 3.7e-86 323.6 419 52.5
Peaxi162Scf00205g00928 Petunia axillaris HOM05D005467 ORTHO05D006523 1.3e-70 271.9 427 37.5
CAN.G1489.4 Capsicum annuum HOM05D005467 ORTHO05D006523 3.7e-70 270.4 414 38.4
Thecc.02G211500 Theobroma cacao HOM05D005467 ORTHO05D006523 6.3e-70 269.6 419 37.9
TAR629G1677 Trochodendron aralioides HOM05D005467 ORTHO05D006523 1.2e-68 265.4 421 36.3
Sopen05g004250 Solanum pennellii HOM05D005467 ORTHO05D006523 4.5e-68 263.5 426 37.1
Manes.06G062500 Manihot esculenta HOM05D005467 ORTHO05D006523 5.9e-68 263.1 427 36.5
CSS0047900 Camellia sinensis var. sinensis HOM05D005467 ORTHO05D006523 1.0e-67 262.3 430 36.0
Nn3g18021 Nelumbo nucifera HOM05D005467 ORTHO05D006523 1.7e-67 261.5 426 36.2
Cfa008565 Carpinus fangiana HOM05D005467 ORTHO05D006523 2.2e-67 261.2 427 36.3
Nitab4.5_0000350g0200 Nicotiana tabacum HOM05D005467 ORTHO05D006523 2.9e-67 260.8 412 36.7
Gorai.012G123600 Gossypium raimondii HOM05D005467 ORTHO05D006523 3.2e-66 257.3 432 36.8
Duzib248G1088 Durio zibethinus HOM05D005467 ORTHO05D006523 4.2e-66 256.9 390 38.2
TWI31G0476 Tripterygium wilfordii HOM05D005467 ORTHO05D006523 7.2e-66 256.1 409 36.7
Potri.010G116200 Populus trichocarpa HOM05D005467 ORTHO05D006523 9.4e-66 255.8 430 35.8
Solyc05g008420.4 Solanum lycopersicum HOM05D005467 ORTHO05D006523 1.2e-65 255.4 416 37.3
PGR119G0286 Punica granatum HOM05D005467 ORTHO05D006523 1.6e-65 255.0 429 34.3
FvH4_4g26200 Fragaria vesca HOM05D005467 ORTHO05D006523 2.1e-65 254.6 423 35.5
RcHm_v2.0_Chr4g0433781 Rosa chinensis HOM05D005467 ORTHO05D006523 2.1e-65 254.6 409 36.7
Ciclev10015390m.g Citrus clementina HOM05D005467 ORTHO05D006523 3.6e-65 253.8 427 34.9
FAN07G0694 Fragaria x ananassa HOM05D005467 ORTHO05D006523 4.7e-65 253.4 416 36.1
CiPaw.05G246600 Carya illinoinensis HOM05D005467 ORTHO05D006523 6.1e-65 253.1 407 36.6
DCAR_007277 Daucus carota HOM05D005467 ORTHO05D006523 6.1e-65 253.1 409 35.9
Gohir.A04G099200 Gossypium hirsutum HOM05D005467 ORTHO05D006523 1.0e-64 252.3 421 36.6
Peaxi162Scf00159g00824 Petunia axillaris HOM05D005467 ORTHO05D006523 1.0e-64 252.3 334 44.3
GSVIVG01011792001 Vitis vinifera HOM05D005467 ORTHO05D006523 1.0e-64 252.3 409 35.9
Solyc02g038660.3 Solanum lycopersicum HOM05D005467 ORTHO05D006523 2.3e-64 251.1 373 43.4
Actinidia14942 Actinidia chinensis HOM05D005467 ORTHO05D006523 6.8e-64 249.6 418 34.9
PGSC0003DMG400029188 Solanum tuberosum HOM05D005467 ORTHO05D006523 6.8e-64 249.6 434 40.3
MBI10_g46301_MAGBIO Magnolia biondii HOM05D005467 ORTHO05D006523 1.2e-63 248.8 371 37.2
MD16G1031500 Malus domestica HOM05D005467 ORTHO05D006523 3.4e-63 247.3 427 33.7
Sed0008724 Sechium edule HOM05D005467 ORTHO05D006523 4.4e-63 246.9 420 34.5
arahy.Tifrunner.gnm1.ann1.U1J3BU Arachis hypogaea HOM05D005467 ORTHO05D006523 5.7e-63 246.5 423 35.0
Migut.L00826 Erythranthe guttata HOM05D005467 ORTHO05D006523 5.7e-63 246.5 427 35.4
Migut.L00653 Erythranthe guttata HOM05D005467 ORTHO05D006523 2.2e-62 244.6 427 34.9
Prupe.1G321400 Prunus persica HOM05D005467 ORTHO05D006523 4.8e-62 243.4 378 36.0
PGSC0003DMG400017876 Solanum tuberosum HOM05D005467 ORTHO05D006523 4.8e-62 243.4 364 47.5
HanXRQChr15g0477671 Helianthus annuus HOM05D005467 ORTHO05D006523 1.8e-61 241.5 430 34.0
ECA246G2902 Erigeron canadensis HOM05D005467 ORTHO05D006523 2.4e-61 241.1 425 34.6
Lj5g0001822 Lotus japonicus HOM05D005467 ORTHO05D006523 3.1e-61 240.7 427 33.7
Phvul.007G035400 Phaseolus vulgaris HOM05D005467 ORTHO05D006523 3.1e-61 240.7 427 34.2
Cpa.g.sc65.104 Carica papaya HOM05D005467 ORTHO05D006523 5.4e-61 240.0 386 38.1
Eucgr.G02222 Eucalyptus grandis HOM05D005467 ORTHO05D006523 5.4e-61 240.0 426 34.0
Sabra10G0087600 Salix brachista HOM05D005467 ORTHO05D006523 5.4e-61 240.0 454 33.7
Hma1.2p1_0114F.1_g055340 Hydrangea macrophylla HOM05D005467 ORTHO05D006523 1.2e-60 238.8 440 33.2
Glyma.10G266400 Glycine max HOM05D005467 ORTHO05D006523 1.6e-60 238.4 427 34.0
CANSAT01G3134 Cannabis sativa HOM05D005467 ORTHO05D006523 2.0e-60 238.0 427 33.5
PSO782G0553 Papaver somniferum HOM05D005467 ORTHO05D006523 2.7e-60 237.7 422 33.2
Glyma.20G124100 Glycine max HOM05D005467 ORTHO05D006523 3.5e-60 237.3 427 34.0
Sabra10G0086000 Salix brachista HOM05D005467 ORTHO05D006523 3.5e-60 237.3 440 33.9
arahy.Tifrunner.gnm1.ann1.F0PHAM Arachis hypogaea HOM05D005467 ORTHO05D006523 4.5e-60 236.9 447 32.9
CsaV3_5G034840 Cucumis sativus L. HOM05D005467 ORTHO05D006523 4.5e-60 236.9 409 34.0
Rhsim09G0101300 Rhododendron simsii HOM05D005467 ORTHO05D006523 5.9e-60 236.5 451 33.0
PSO063G5439 Papaver somniferum HOM05D005467 ORTHO05D006523 7.7e-60 236.1 418 32.8
VMungo0720G1946 Vigna mungo HOM05D005467 ORTHO05D006523 1.3e-59 235.3 419 34.4
Aqoxy3G00153 Aquilegia oxysepala HOM05D005467 ORTHO05D006523 5.0e-59 233.4 420 32.9
ClCG05G022280 Citrullus lanatus HOM05D005467 ORTHO05D006523 5.0e-59 233.4 399 34.1
SGA_v2.0_scaffold50G18532 Striga asiatica HOM05D005467 ORTHO05D006523 8.5e-59 232.6 421 35.2
Lalb_Chr21g0308561 Lupinus albus HOM05D005467 ORTHO05D006523 1.9e-58 231.5 427 32.3
TPR.G4835 Trifolium pratense HOM05D005467 ORTHO05D006523 1.9e-58 231.5 426 32.9
Lj6C750G3 Lonicera japonica HOM05D005467 ORTHO05D006523 6.1e-57 226.5 406 34.7
Psat6g222960 Pisum sativum HOM05D005467 ORTHO05D006523 6.1e-57 226.5 426 32.6
AUR62014129 Chenopodium quinoa HOM05D005467 ORTHO05D006523 1.8e-56 224.9 425 33.6
Medtr1g108650 Medicago truncatula HOM05D005467 ORTHO05D006523 6.8e-56 223.0 426 31.7
QL01p002615 Quercus lobata HOM05D005467 ORTHO05D006523 6.8e-56 223.0 509 30.5
PGSC0003DMG400023165 Solanum tuberosum HOM05D005467 ORTHO05D006523 2.0e-55 221.5 193 65.3
Atru.chr11.358 Acer truncatum HOM05D005467 ORTHO05D006523 4.4e-55 220.3 374 35.6
Ah.02g128100 Amaranthus hybridus HOM05D005467 ORTHO05D006523 5.7e-55 219.9 445 32.1
Nitab4.5_0000293g0010 Nicotiana tabacum HOM05D005467 ORTHO05D006523 9.8e-55 219.2 433 32.3
Os01g0506200 Oryza sativa ssp. japonica HOM05D005467 ORTHO05D006523 1.3e-54 218.8 378 32.0
unitig_21.g20024 Utricularia gibba HOM05D000903 ORTHO05D000731 1.7e-54 218.4 382 35.6
Ca_11108_v3 Cicer arietinum L. HOM05D005467 ORTHO05D006523 3.7e-54 217.2 415 33.3
TAR622G1271 Trochodendron aralioides HOM05D005467 ORTHO05D006523 9.2e-53 212.6 368 34.0
FAN12G1869 Fragaria x ananassa HOM05D005467 ORTHO05D006523 2.0e-52 211.5 423 32.4
Nitab4.5_0000350g0270 Nicotiana tabacum HOM05D005467 ORTHO05D006523 2.0e-52 211.5 415 33.0
FAN12G3855 Fragaria x ananassa HOM05D005467 ORTHO05D006523 1.0e-51 209.1 423 32.4
Solyc02g038700.3 Solanum lycopersicum HOM05D005467 ORTHO05D006523 6.1e-49 199.9 375 41.3
Hund24998 Selenicereus undatus HOM05D005467 ORTHO05D006523 2.3e-48 198.0 414 32.1
AUR62039552 Chenopodium quinoa HOM05D005467 ORTHO05D006523 4.0e-48 197.2 389 34.2
Gohir.D04G138566 Gossypium hirsutum HOM05D005467 ORTHO05D006523 5.7e-47 193.4 238 43.7
Cc11_g09130 Coffea canephora HOM05D005467 ORTHO05D006523 1.2e-44 185.7 237 40.1
Lsat_1_v5_gn_3_54101 Lactuca sativa HOM05D005467 ORTHO05D006523 1.3e-43 182.2 237 40.9
ATR0041G011 Amborella trichopoda HOM05D005467 ORTHO05D006523 5.6e-42 176.8 385 29.9
MSTRG.879 Avicennia marina HOM05D005467 ORTHO05D006523 5.6e-42 176.8 371 30.7
vmacro10622 Vaccinium macrocarpon HOM05D005467 ORTHO05D006523 3.1e-40 171.0 428 29.0
MELO3C012295.2 Cucumis melo HOM05D005467 ORTHO05D006523 6.8e-40 169.9 372 30.6
FAN17G2566 Fragaria x ananassa HOM05D005467 ORTHO05D006523 4.4e-39 167.2 203 41.9
Peaxi162Scf00205g00812 Petunia axillaris HOM05D005467 ORTHO05D006523 9.8e-39 166.0 345 31.9
Gohir.D04G138632 Gossypium hirsutum HOM05D005467 ORTHO05D006523 1.4e-37 162.2 343 31.8
SMO172G0164 Selaginella moellendorffii HOM05D005467 ORTHO05D006523 1.0e-35 156.0 376 27.4
Dinv05879 Davidia involucrata HOM05D005467 ORTHO05D006523 1.9e-34 151.8 330 31.2
PGSC0003DMG400017875 Solanum tuberosum HOM05D005467 ORTHO05D006523 1.4e-32 145.6 77 87.0
Nitab4.5_0004524g0030 Nicotiana tabacum HOM05D005467 ORTHO05D006523 5.2e-32 143.7 276 32.2
AagrBONN_evm.TU.Sc2ySwM_344.4352 Anthoceros agrestis HOM05D005467 ORTHO05D006523 2.6e-31 141.4 371 27.5
HPP92_008650 Vanilla planifolia HOM05D005467 ORTHO05D006523 4.4e-31 140.6 233 33.0
Zm00001eb341680 Zea mays HOM05D005467 ORTHO05D006523 7.5e-31 139.8 280 30.0
Nitab4.5_0004524g0050 Nicotiana tabacum HOM05D005467 ORTHO05D006523 1.4e-29 135.6 114 54.4
Sc04g0005780 Simmondsia chinensis HOM05D005467 ORTHO05D006523 1.5e-26 125.6 270 30.7
Nitab4.5_0004367g0150 Nicotiana tabacum HOM05D005467 ORTHO05D006523 1.9e-26 125.2 124 48.4
CBR_g17592 Chara braunii HOM05D005467 ORTHO05D006523 5.6e-26 123.6 341 26.7
Nitab4.5_0002820g0080 Nicotiana tabacum HOM05D005467 ORTHO05D006523 4.7e-25 120.6 116 49.1
Pp3c22_2590 Physcomitrium patens HOM05D005467 ORTHO05D006523 3.1e-24 117.9 317 26.8
PGSC0003DMG400038827 Solanum tuberosum HOM05D005467 ORTHO05D006523 3.4e-23 114.4 165 44.8
FAN17G1461 Fragaria x ananassa HOM05D005467 ORTHO05D006523 1.2e-15 89.4 131 37.4
MCO12G173 Micromonas commoda HOM05D005467 ORTHO05D006523 1.5e-15 89.0 379 24.3
SEGI_12457 Sequoiadendron giganteum HOM05D005467 ORTHO05D006523 2.0e-15 88.6 156 38.5
Dinv04888 Davidia involucrata HOM05D005467 ORTHO05D006523 9.9e-15 86.3 169 32.5
Cc11_g09120 Coffea canephora HOM05D005467 ORTHO05D006523 2.9e-14 84.7 145 37.2
Nitab4.5_0019054g0020 Nicotiana tabacum HOM05D005467 ORTHO05D006523 3.8e-14 84.3 218 27.1
Haze_11049 Corylus avellana HOM05D005467 ORTHO05D006523 8.4e-14 83.2 161 33.5
CDE06G2222 Ceratophyllum demersum HOM05D005467 ORTHO05D006523 1.9e-13 82.0 216 29.6
Sopen02g012660 Solanum pennellii HOM05D000004 ORTHO05D000002 5.4e-13 80.5 92 52.2
Oeu064202.3 Olea europaea HOM05D005467 ORTHO05D006523 1.3e-11 75.9 122 36.1
Nitab4.5_0002820g0070 Nicotiana tabacum HOM05D005467 ORTHO05D006523 1.7e-11 75.5 132 31.1
CDE07G1108 Ceratophyllum demersum HOM05D005467 ORTHO05D006523 4.3e-10 70.9 66 47.0
RcHm_v2.0_Chr7g0235151 Rosa chinensis HOM05D005467 ORTHO05D006523 7.3e-10 70.1 86 39.5
RcHm_v2.0_Chr3g0493761 Rosa chinensis HOM05D005467 ORTHO05D006523 2.6e-07 61.6 70 42.9
Lsat_1_v5_gn_7_58700 Lactuca sativa HOM05D005467 ORTHO05D006523 3.4e-07 61.2 80 37.5
Lsat_1_v5_gn_4_96160 Lactuca sativa HOM05D005467 ORTHO05D006523 7.6e-07 60.1 80 36.2
Nitab4.5_0000688g0010 Nicotiana tabacum HOM05D005467 ORTHO05D006523 6.4e-06 57.0 165 30.9
Lsat_1_v5_gn_3_107041 Lactuca sativa HOM05D005467 ORTHO05D006523 8.4e-06 56.6 194 23.2


User provided reference genes

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