Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g038650.1 Solanum lycopersicum HOM05D005467 ORTHO05D006523 2.4e-258 895.6 672 100.0
Sopen02g012020 Solanum pennellii HOM05D005467 ORTHO05D006523 8.3e-195 684.5 696 84.1
PGSC0003DMG400017873 Solanum tuberosum HOM05D005467 ORTHO05D006523 4.2e-130 469.5 444 55.9
Solyc02g038700.3 Solanum lycopersicum HOM05D005467 ORTHO05D006523 3.9e-112 409.8 677 63.7
Sopen02g012000 Solanum pennellii HOM05D005467 ORTHO05D006523 3.1e-109 400.2 425 54.8
Solyc02g038680.1 Solanum lycopersicum HOM05D005467 ORTHO05D006523 1.6e-105 387.9 403 56.8
Sopen02g012010 Solanum pennellii HOM05D005467 ORTHO05D006523 2.4e-101 374.0 385 55.1
PGSC0003DMG400029189 Solanum tuberosum HOM05D005467 ORTHO05D006523 3.2e-98 363.6 393 52.2
Solyc02g038670.3 Solanum lycopersicum HOM05D005467 ORTHO05D006523 2.3e-88 330.9 496 44.6
Peaxi162Scf00159g00823 Petunia axillaris HOM05D005467 ORTHO05D006523 2.8e-86 323.9 373 50.1
Sopen02g012080 Solanum pennellii HOM05D005467 ORTHO05D006523 1.6e-73 281.6 373 47.7
PGSC0003DMG400029188 Solanum tuberosum HOM05D005467 ORTHO05D006523 2.0e-68 264.6 422 40.0
PGR119G0286 Punica granatum HOM05D005467 ORTHO05D006523 1.7e-67 261.5 353 40.5
Peaxi162Scf00205g00928 Petunia axillaris HOM05D005467 ORTHO05D006523 4.3e-66 256.9 381 39.1
Thecc.02G211500 Theobroma cacao HOM05D005467 ORTHO05D006523 6.2e-65 253.1 340 40.3
Cfa008565 Carpinus fangiana HOM05D005467 ORTHO05D006523 3.1e-64 250.8 353 39.1
Nitab4.5_0000350g0200 Nicotiana tabacum HOM05D005467 ORTHO05D006523 4.0e-64 250.4 370 38.9
Nn3g18021 Nelumbo nucifera HOM05D005467 ORTHO05D006523 1.2e-63 248.8 340 39.4
TWI31G0476 Tripterygium wilfordii HOM05D005467 ORTHO05D006523 1.2e-63 248.8 340 40.3
CSS0047900 Camellia sinensis var. sinensis HOM05D005467 ORTHO05D006523 1.5e-63 248.4 353 38.5
Sopen05g004250 Solanum pennellii HOM05D005467 ORTHO05D006523 2.0e-63 248.1 381 38.3
ECA246G2902 Erigeron canadensis HOM05D005467 ORTHO05D006523 3.4e-63 247.3 340 39.7
Ciclev10015390m.g Citrus clementina HOM05D005467 ORTHO05D006523 5.8e-63 246.5 336 39.9
CAN.G1489.4 Capsicum annuum HOM05D005467 ORTHO05D006523 1.3e-62 245.4 381 37.5
Solyc05g008420.4 Solanum lycopersicum HOM05D005467 ORTHO05D006523 1.7e-62 245.0 341 41.3
Potri.010G116200 Populus trichocarpa HOM05D005467 ORTHO05D006523 2.9e-62 244.2 340 39.7
HanXRQChr15g0477671 Helianthus annuus HOM05D005467 ORTHO05D006523 8.3e-62 242.7 340 38.2
Gohir.A04G099200 Gossypium hirsutum HOM05D005467 ORTHO05D006523 1.1e-61 242.3 341 39.6
FvH4_4g26200 Fragaria vesca HOM05D005467 ORTHO05D006523 4.1e-61 240.4 340 39.4
PGSC0003DMG400023165 Solanum tuberosum HOM05D005467 ORTHO05D006523 4.1e-61 240.4 193 71.5
GSVIVG01011792001 Vitis vinifera HOM05D005467 ORTHO05D006523 4.1e-61 240.4 353 38.5
Migut.L00653 Erythranthe guttata HOM05D005467 ORTHO05D006523 5.4e-61 240.0 353 38.0
Eucgr.G02222 Eucalyptus grandis HOM05D005467 ORTHO05D006523 5.4e-61 240.0 340 38.2
Gorai.012G123600 Gossypium raimondii HOM05D005467 ORTHO05D006523 5.4e-61 240.0 341 39.3
TAR629G1677 Trochodendron aralioides HOM05D005467 ORTHO05D006523 5.4e-61 240.0 357 38.7
RcHm_v2.0_Chr4g0433781 Rosa chinensis HOM05D005467 ORTHO05D006523 1.2e-60 238.8 340 39.4
Migut.L00826 Erythranthe guttata HOM05D005467 ORTHO05D006523 1.6e-60 238.4 340 38.5
MBI10_g46301_MAGBIO Magnolia biondii HOM05D005467 ORTHO05D006523 1.6e-60 238.4 357 37.3
Sed0008724 Sechium edule HOM05D005467 ORTHO05D006523 2.1e-60 238.0 344 37.2
Medtr1g108650 Medicago truncatula HOM05D005467 ORTHO05D006523 2.7e-60 237.7 340 37.6
Prupe.1G321400 Prunus persica HOM05D005467 ORTHO05D006523 4.6e-60 236.9 340 38.8
Phvul.007G035400 Phaseolus vulgaris HOM05D005467 ORTHO05D006523 1.0e-59 235.7 357 37.5
Actinidia14942 Actinidia chinensis HOM05D005467 ORTHO05D006523 1.3e-59 235.3 340 38.5
CANSAT01G3134 Cannabis sativa HOM05D005467 ORTHO05D006523 1.7e-59 235.0 341 37.2
DCAR_007277 Daucus carota HOM05D005467 ORTHO05D006523 1.7e-59 235.0 340 37.6
Glyma.20G124100 Glycine max HOM05D005467 ORTHO05D006523 1.7e-59 235.0 353 37.4
Psat6g222960 Pisum sativum HOM05D005467 ORTHO05D006523 2.3e-59 234.6 340 37.1
FAN07G0694 Fragaria x ananassa HOM05D005467 ORTHO05D006523 3.0e-59 234.2 340 38.8
Glyma.10G266400 Glycine max HOM05D005467 ORTHO05D006523 3.0e-59 234.2 357 37.5
VMungo0720G1946 Vigna mungo HOM05D005467 ORTHO05D006523 6.6e-59 233.0 357 37.0
TPR.G4835 Trifolium pratense HOM05D005467 ORTHO05D006523 8.6e-59 232.6 340 37.4
Sabra10G0087600 Salix brachista HOM05D005467 ORTHO05D006523 1.9e-58 231.5 365 36.4
CiPaw.05G246600 Carya illinoinensis HOM05D005467 ORTHO05D006523 3.3e-58 230.7 353 36.8
Lj5g0001822 Lotus japonicus HOM05D005467 ORTHO05D006523 3.3e-58 230.7 340 37.9
Manes.06G062500 Manihot esculenta HOM05D005467 ORTHO05D006523 4.3e-58 230.3 381 35.7
MD16G1031500 Malus domestica HOM05D005467 ORTHO05D006523 7.3e-58 229.6 340 37.1
Sabra10G0086000 Salix brachista HOM05D005467 ORTHO05D006523 7.3e-58 229.6 369 36.0
Ah.02g128100 Amaranthus hybridus HOM05D005467 ORTHO05D006523 9.5e-58 229.2 371 37.2
Peaxi162Scf00159g00824 Petunia axillaris HOM05D005467 ORTHO05D006523 9.5e-58 229.2 525 31.6
arahy.Tifrunner.gnm1.ann1.U1J3BU Arachis hypogaea HOM05D005467 ORTHO05D006523 1.6e-57 228.4 353 37.1
AUR62014129 Chenopodium quinoa HOM05D005467 ORTHO05D006523 2.8e-57 227.6 371 38.0
Hma1.2p1_0114F.1_g055340 Hydrangea macrophylla HOM05D005467 ORTHO05D006523 2.8e-57 227.6 352 36.9
Cpa.g.sc65.104 Carica papaya HOM05D005467 ORTHO05D006523 1.1e-56 225.7 383 35.0
Aqoxy3G00153 Aquilegia oxysepala HOM05D005467 ORTHO05D006523 1.4e-56 225.3 382 34.3
Rhsim09G0101300 Rhododendron simsii HOM05D005467 ORTHO05D006523 1.8e-56 224.9 390 35.1
Lalb_Chr21g0308561 Lupinus albus HOM05D005467 ORTHO05D006523 3.1e-56 224.2 353 36.3
Os01g0506200 Oryza sativa ssp. japonica HOM05D005467 ORTHO05D006523 4.0e-56 223.8 357 35.6
PSO063G5439 Papaver somniferum HOM05D005467 ORTHO05D006523 8.9e-56 222.6 338 36.4
arahy.Tifrunner.gnm1.ann1.F0PHAM Arachis hypogaea HOM05D005467 ORTHO05D006523 1.5e-55 221.9 374 35.8
ClCG05G022280 Citrullus lanatus HOM05D005467 ORTHO05D006523 3.4e-55 220.7 343 36.2
CsaV3_5G034840 Cucumis sativus L. HOM05D005467 ORTHO05D006523 5.8e-55 219.9 344 36.3
PSO782G0553 Papaver somniferum HOM05D005467 ORTHO05D006523 5.8e-55 219.9 342 36.5
Atru.chr11.358 Acer truncatum HOM05D005467 ORTHO05D006523 7.5e-55 219.5 312 39.4
SGA_v2.0_scaffold50G18532 Striga asiatica HOM05D005467 ORTHO05D006523 7.1e-53 213.0 371 34.2
TAR622G1271 Trochodendron aralioides HOM05D005467 ORTHO05D006523 1.2e-52 212.2 321 37.4
Gohir.D04G138566 Gossypium hirsutum HOM05D005467 ORTHO05D006523 1.6e-52 211.8 287 40.1
Cc11_g09130 Coffea canephora HOM05D005467 ORTHO05D006523 7.8e-52 209.5 278 40.6
Lj6C750G3 Lonicera japonica HOM05D005467 ORTHO05D006523 2.3e-51 208.0 340 35.9
FAN12G3855 Fragaria x ananassa HOM05D005467 ORTHO05D006523 5.1e-51 206.8 340 36.2
Ca_11108_v3 Cicer arietinum L. HOM05D005467 ORTHO05D006523 6.6e-51 206.5 340 34.7
QL01p002615 Quercus lobata HOM05D005467 ORTHO05D006523 8.6e-51 206.1 435 30.6
AUR62039552 Chenopodium quinoa HOM05D005467 ORTHO05D006523 1.1e-50 205.7 404 34.2
Solyc02g038660.3 Solanum lycopersicum HOM05D005467 ORTHO05D006523 1.9e-50 204.9 365 38.1
Nitab4.5_0000293g0010 Nicotiana tabacum HOM05D005467 ORTHO05D006523 2.5e-50 204.5 346 34.7
PGSC0003DMG400017876 Solanum tuberosum HOM05D005467 ORTHO05D006523 2.5e-50 204.5 223 59.6
Lsat_1_v5_gn_3_54101 Lactuca sativa HOM05D005467 ORTHO05D006523 3.3e-50 204.1 286 38.1
FAN12G1869 Fragaria x ananassa HOM05D005467 ORTHO05D006523 4.3e-50 203.8 340 35.9
Hund24998 Selenicereus undatus HOM05D005467 ORTHO05D006523 2.1e-49 201.4 340 36.5
unitig_21.g20024 Utricularia gibba HOM05D000903 ORTHO05D000731 3.6e-49 200.7 276 38.8
Duzib248G1088 Durio zibethinus HOM05D005467 ORTHO05D006523 1.4e-48 198.7 341 35.5
ATR0041G011 Amborella trichopoda HOM05D005467 ORTHO05D006523 2.4e-48 198.0 355 32.4
MSTRG.879 Avicennia marina HOM05D005467 ORTHO05D006523 2.3e-43 181.4 345 31.9
Nitab4.5_0000350g0270 Nicotiana tabacum HOM05D005467 ORTHO05D006523 3.0e-43 181.0 343 32.1
HPP92_008650 Vanilla planifolia HOM05D005467 ORTHO05D006523 8.7e-43 179.5 286 34.3
SMO172G0164 Selaginella moellendorffii HOM05D005467 ORTHO05D006523 2.1e-41 174.9 339 29.8
MELO3C012295.2 Cucumis melo HOM05D005467 ORTHO05D006523 1.2e-39 169.1 304 33.2
Zm00001eb341680 Zea mays HOM05D005467 ORTHO05D006523 1.6e-36 158.7 319 29.8
vmacro10622 Vaccinium macrocarpon HOM05D005467 ORTHO05D006523 7.8e-36 156.4 364 30.2
Gohir.D04G138632 Gossypium hirsutum HOM05D005467 ORTHO05D006523 5.1e-35 153.7 267 34.5
AagrBONN_evm.TU.Sc2ySwM_344.4352 Anthoceros agrestis HOM05D005467 ORTHO05D006523 6.6e-35 153.3 336 31.2
Dinv05879 Davidia involucrata HOM05D005467 ORTHO05D006523 3.3e-34 151.0 278 33.5
FAN17G2566 Fragaria x ananassa HOM05D005467 ORTHO05D006523 1.8e-32 145.2 199 41.2
Nitab4.5_0004524g0030 Nicotiana tabacum HOM05D005467 ORTHO05D006523 1.2e-31 142.5 228 36.8
Sc04g0005780 Simmondsia chinensis HOM05D005467 ORTHO05D006523 4.9e-30 137.1 200 38.5
CBR_g17592 Chara braunii HOM05D005467 ORTHO05D006523 2.3e-27 128.3 336 28.9
PGSC0003DMG400017875 Solanum tuberosum HOM05D005467 ORTHO05D006523 5.6e-26 123.6 77 75.3
Nitab4.5_0004524g0050 Nicotiana tabacum HOM05D005467 ORTHO05D006523 9.6e-26 122.9 116 51.7
Peaxi162Scf00205g00812 Petunia axillaris HOM05D005467 ORTHO05D006523 8.1e-25 119.8 386 27.7
Nitab4.5_0002820g0080 Nicotiana tabacum HOM05D005467 ORTHO05D006523 2.4e-24 118.2 123 43.9
Nitab4.5_0004367g0150 Nicotiana tabacum HOM05D005467 ORTHO05D006523 2.4e-24 118.2 131 42.0
MCO12G173 Micromonas commoda HOM05D005467 ORTHO05D006523 4.5e-23 114.0 344 25.3
PRCOL_00002109 Prasinoderma coloniale HOM05D005467 ORTHO05D006523 7.9e-20 103.2 339 26.5
CDE06G2222 Ceratophyllum demersum HOM05D005467 ORTHO05D006523 3.3e-18 97.8 141 38.3
Lsat_1_v5_gn_3_86380 Lactuca sativa HOM05D005467 ORTHO05D006523 2.0e-15 88.6 133 36.1
PGSC0003DMG400038827 Solanum tuberosum HOM05D005467 ORTHO05D006523 1.1e-13 82.8 153 47.1
Oeu064202.3 Olea europaea HOM05D005467 ORTHO05D006523 2.5e-13 81.6 181 29.3
Haze_11050 Corylus avellana HOM05D005467 ORTHO05D006523 1.2e-12 79.3 178 28.7
Sed0021963 Sechium edule HOM05D005467 ORTHO05D006523 3.5e-12 77.8 138 34.8
Pp3c22_2590 Physcomitrium patens HOM05D005467 ORTHO05D006523 1.3e-11 75.9 114 33.3
FAN17G1461 Fragaria x ananassa HOM05D005467 ORTHO05D006523 3.0e-11 74.7 131 35.1
Sopen02g012660 Solanum pennellii HOM05D000004 ORTHO05D000002 5.1e-11 73.9 91 49.5
Lsat_1_v5_gn_7_58700 Lactuca sativa HOM05D005467 ORTHO05D006523 6.7e-11 73.6 94 38.3
Lsat_1_v5_gn_4_96160 Lactuca sativa HOM05D005467 ORTHO05D006523 1.5e-10 72.4 94 37.2
RcHm_v2.0_Chr7g0235151 Rosa chinensis HOM05D005467 ORTHO05D006523 9.7e-10 69.7 84 39.3
Nitab4.5_0000688g0010 Nicotiana tabacum HOM05D005467 ORTHO05D006523 3.7e-09 67.8 182 30.8
CDE07G1108 Ceratophyllum demersum HOM05D005467 ORTHO05D006523 3.4e-07 61.2 67 37.3
Lsat_1_v5_gn_3_107041 Lactuca sativa HOM05D005467 ORTHO05D006523 4.5e-07 60.8 117 29.9
Lsat_1_v5_gn_6_22900 Lactuca sativa HOM05D005467 ORTHO05D006523 1.0e-06 59.7 59 44.1


User provided reference genes

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