Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g036460.3 Solanum lycopersicum HOM05D003795 ORTHO05D004308 0.0e+00 1077.4 569 100.0
Sopen02g011820 Solanum pennellii HOM05D003795 ORTHO05D004308 4.1e-296 1020.8 575 95.1
PGSC0003DMG400021472 Solanum tuberosum HOM05D003795 ORTHO05D004308 6.9e-243 844.0 591 83.1
CAN.G304.8 Capsicum annuum HOM05D003795 ORTHO05D004308 4.7e-175 618.6 579 66.7
Nitab4.5_0008083g0010 Nicotiana tabacum HOM05D003795 ORTHO05D004308 3.9e-153 545.8 640 58.1
Nitab4.5_0002297g0070 Nicotiana tabacum HOM05D003795 ORTHO05D004308 2.5e-144 516.5 640 56.2
Peaxi162Scf00784g00029 Petunia axillaris HOM05D003795 ORTHO05D004308 1.1e-118 431.4 648 48.9
CAN.G809.93 Capsicum annuum HOM05D003795 ORTHO05D004308 1.9e-91 340.9 716 43.4
Peaxi162Scf00344g00199 Petunia axillaris HOM05D003795 ORTHO05D004308 2.1e-90 337.4 710 43.1
PGSC0003DMG400019727 Solanum tuberosum HOM05D003795 ORTHO05D004308 2.8e-87 327.0 718 40.8
Nitab4.5_0000483g0170 Nicotiana tabacum HOM05D003795 ORTHO05D004308 1.6e-85 321.2 719 41.3
Nitab4.5_0012787g0030 Nicotiana tabacum HOM05D003795 ORTHO05D004308 5.9e-85 319.3 711 41.5
Sopen02g026080 Solanum pennellii HOM05D003795 ORTHO05D004308 2.8e-82 310.5 725 40.0
Solyc02g081440.4 Solanum lycopersicum HOM05D003795 ORTHO05D004308 3.6e-82 310.1 728 39.3
Cc07_g12620 Coffea canephora HOM05D003795 ORTHO05D004308 8.0e-74 282.3 755 35.1
Dinv28269 Davidia involucrata HOM05D003795 ORTHO05D004308 2.4e-70 270.8 750 37.1
Lj2A509T28 Lonicera japonica HOM05D003795 ORTHO05D004308 6.0e-69 266.2 728 37.4
Duzib138G1939 Durio zibethinus HOM05D003795 ORTHO05D004308 3.3e-67 260.4 709 37.0
DCAR_014135 Daucus carota HOM05D003795 ORTHO05D004308 1.1e-65 255.4 684 37.1
CSS0049356 Camellia sinensis var. sinensis HOM05D003795 ORTHO05D004308 3.1e-65 253.8 750 34.8
MSTRG.15619 Avicennia marina HOM05D003795 ORTHO05D004308 3.4e-64 250.4 695 36.7
QL02p056567 Quercus lobata HOM05D003795 ORTHO05D004308 2.2e-63 247.7 716 36.2
QL02p055515 Quercus lobata HOM05D003795 ORTHO05D004308 1.9e-62 244.6 698 36.8
MSTRG.3665 Avicennia marina HOM05D003795 ORTHO05D004308 6.0e-61 239.6 708 35.2
Haze_14040 Corylus avellana HOM05D003795 ORTHO05D004308 1.0e-60 238.8 722 34.8
Potri.012G145200 Populus trichocarpa HOM05D003795 ORTHO05D004308 9.5e-59 232.3 701 34.7
TWI74G0163 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 4.7e-58 229.9 730 36.0
Thecc.04G056400 Theobroma cacao HOM05D003795 ORTHO05D004308 1.8e-57 228.0 707 35.4
Phvul.006G083400 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 5.2e-57 226.5 690 34.3
Sabra15G0156700 Salix brachista HOM05D003795 ORTHO05D004308 8.9e-57 225.7 762 34.1
Sabra12G0109200 Salix brachista HOM05D003795 ORTHO05D004308 5.8e-56 223.0 646 36.2
Phvul.008G243000 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 9.9e-56 222.2 684 34.4
Potri.015G147900 Populus trichocarpa HOM05D003795 ORTHO05D004308 2.9e-55 220.7 768 34.6
Manes.01G125700 Manihot esculenta HOM05D003795 ORTHO05D004308 5.4e-54 216.5 741 35.0
TWI77G0024 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 7.1e-54 216.1 719 36.3
vmacro20445 Vaccinium macrocarpon HOM05D003795 ORTHO05D004308 1.6e-53 214.9 655 35.1
VMungo0647G0124 Vigna mungo HOM05D003795 ORTHO05D004308 1.6e-53 214.9 704 34.7
Glyma.18G048000 Glycine max HOM05D003795 ORTHO05D004308 2.1e-53 214.5 702 33.2
Oeu060824.1 Olea europaea HOM05D003795 ORTHO05D004308 3.5e-53 213.8 584 37.2
Gohir.A11G170300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 1.3e-52 211.8 623 36.3
Cpa.g.sc108.20 Carica papaya HOM05D003795 ORTHO05D004308 2.3e-52 211.1 702 33.9
Oeu012502.2 Olea europaea HOM05D003795 ORTHO05D004308 3.9e-52 210.3 676 34.8
Glyma.14G207900 Glycine max HOM05D003795 ORTHO05D004308 5.1e-52 209.9 676 34.0
PGSC0003DMG402019715 Solanum tuberosum HOM05D003795 ORTHO05D004308 2.1e-50 204.5 256 53.5
Rhsim10G0186600 Rhododendron simsii HOM05D003795 ORTHO05D004308 3.6e-50 203.8 725 33.2
CiPaw.03G010000 Carya illinoinensis HOM05D003795 ORTHO05D004308 6.2e-50 203.0 755 32.2
Oeu041416.1 Olea europaea HOM05D003795 ORTHO05D004308 1.1e-49 202.2 634 35.0
VMungo0540G0009 Vigna mungo HOM05D003795 ORTHO05D004308 1.1e-49 202.2 685 33.7
Manes.02G083300 Manihot esculenta HOM05D003795 ORTHO05D004308 5.2e-49 199.9 733 33.6
GSVIVG01033197001 Vitis vinifera HOM05D003795 ORTHO05D004308 1.5e-48 198.4 682 35.8
SGA_v2.0_scaffold199G41250 Striga asiatica HOM05D003795 ORTHO05D004308 2.6e-48 197.6 624 36.1
ClCG01G008410 Citrullus lanatus HOM05D003795 ORTHO05D004308 4.9e-47 193.4 702 32.1
Gohir.D11G177300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 1.4e-46 191.8 609 35.3
Ca_15099_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 2.4e-46 191.0 644 33.2
Migut.K01203 Erythranthe guttata HOM05D003795 ORTHO05D004308 2.4e-46 191.0 644 33.9
SalBow5G4136 Salvia bowleyana HOM05D003795 ORTHO05D004308 2.4e-46 191.0 606 34.2
RcHm_v2.0_Chr7g0242011 Rosa chinensis HOM05D003795 ORTHO05D004308 4.2e-46 190.3 740 33.0
CsaV3_5G024360 Cucumis sativus L. HOM05D003795 ORTHO05D004308 7.1e-46 189.5 775 31.2
Nn4g24993 Nelumbo nucifera HOM05D003795 ORTHO05D004308 1.6e-45 188.3 633 33.3
Hma1.2p1_0034F.1_g021500 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 2.1e-45 188.0 708 30.5
Gorai.007G189400 Gossypium raimondii HOM05D003795 ORTHO05D004308 3.5e-45 187.2 623 35.0
Glyma.11G202800 Glycine max HOM05D003795 ORTHO05D004308 7.8e-45 186.0 723 33.5
unitig_0.g1678 Utricularia gibba HOM05D003795 ORTHO05D004308 2.3e-44 184.5 589 33.4
Nn4g24995 Nelumbo nucifera HOM05D003795 ORTHO05D004308 5.1e-44 183.3 625 32.5
Lj6g0018352 Lotus japonicus HOM05D003795 ORTHO05D004308 6.6e-44 183.0 723 31.0
Hma1.2p1_0085F.1_g043870 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 3.3e-43 180.6 710 32.7
MELO3C025107.2 Cucumis melo HOM05D003795 ORTHO05D004308 4.3e-43 180.3 767 31.7
Ciclev10011149m.g Citrus clementina HOM05D003795 ORTHO05D004308 5.6e-43 179.9 749 31.8
FAN18G0662 Fragaria x ananassa HOM05D003795 ORTHO05D004308 9.6e-43 179.1 742 32.9
FAN18G1276 Fragaria x ananassa HOM05D003795 ORTHO05D004308 9.6e-43 179.1 742 32.9
Sed0021341 Sechium edule HOM05D003795 ORTHO05D004308 1.2e-42 178.7 704 31.7
FAN08G2134 Fragaria x ananassa HOM05D003795 ORTHO05D004308 1.6e-42 178.3 735 33.3
FvH4_5g39710 Fragaria vesca HOM05D003795 ORTHO05D004308 2.1e-42 177.9 737 33.1
Glyma.02G239000 Glycine max HOM05D003795 ORTHO05D004308 8.1e-42 176.0 712 32.3
Lalb_Chr18g0053951 Lupinus albus HOM05D003795 ORTHO05D004308 2.4e-41 174.5 622 32.6
Psat5g144840 Pisum sativum HOM05D003795 ORTHO05D004308 5.3e-41 173.3 565 34.5
Ca_05735_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 9.0e-41 172.6 677 31.3
arahy.Tifrunner.gnm1.ann1.SLU9BZ Arachis hypogaea HOM05D003795 ORTHO05D004308 1.5e-40 171.8 775 31.6
arahy.Tifrunner.gnm1.ann1.686QXT Arachis hypogaea HOM05D003795 ORTHO05D004308 2.6e-40 171.0 708 32.5
Medtr3g063210 Medicago truncatula HOM05D003795 ORTHO05D004308 2.6e-40 171.0 631 33.1
Hund22224 Selenicereus undatus HOM05D003795 ORTHO05D004308 9.9e-40 169.1 763 30.9
unitig_748.g7017 Utricularia gibba HOM05D003795 ORTHO05D004308 2.9e-39 167.5 598 33.9
TPR.G37433 Trifolium pratense HOM05D003795 ORTHO05D004308 3.2e-38 164.1 597 33.0
COL.COLO4_13440 Corchorus olitorius HOM05D003795 ORTHO05D004308 2.7e-37 161.0 630 33.3
PSO063G2224 Papaver somniferum HOM05D003795 ORTHO05D004308 3.5e-37 160.6 624 33.0
Lsat_1_v5_gn_2_72041 Lactuca sativa HOM05D003795 ORTHO05D004308 1.3e-36 158.7 643 30.8
LjContig00141g0025814 Lotus japonicus HOM05D003795 ORTHO05D004308 3.0e-36 157.5 615 33.0
PSO782G2347 Papaver somniferum HOM05D003795 ORTHO05D004308 3.0e-36 157.5 671 31.4
EL10Ac4g08850 Beta vulgaris HOM05D003795 ORTHO05D004308 9.6e-35 152.5 764 29.2
THA.LOC104805668 Tarenaya hassleriana HOM05D003795 ORTHO05D004308 9.6e-35 152.5 677 30.9
CANSAT78G1023 Cannabis sativa HOM05D003795 ORTHO05D004308 6.2e-34 149.8 617 31.0
HanXRQChr14g0443551 Helianthus annuus HOM05D003795 ORTHO05D004308 1.1e-33 149.1 622 32.6
PGR042G3398 Punica granatum HOM05D003795 ORTHO05D004308 2.4e-33 147.9 671 29.8
Actinidia22883 Actinidia chinensis HOM05D003795 ORTHO05D004308 3.1e-33 147.5 641 30.9
Psat2g048640 Pisum sativum HOM05D003795 ORTHO05D004308 5.3e-33 146.7 631 32.8
Aqoxy3G04352 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 6.9e-33 146.4 616 32.5
Actinidia32996 Actinidia chinensis HOM05D003795 ORTHO05D004308 9.0e-33 146.0 375 37.6
Ah.06g191370 Amaranthus hybridus HOM05D003795 ORTHO05D004308 2.0e-32 144.8 719 28.1
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 2.0e-32 144.8 175 55.4
FAN04G0804 Fragaria x ananassa HOM05D003795 ORTHO05D004308 3.4e-32 144.1 650 31.2
Eucgr.J01649 Eucalyptus grandis HOM05D003795 ORTHO05D004308 4.5e-32 143.7 426 35.2
MBI06_g17214_MAGBIO Magnolia biondii HOM05D003795 ORTHO05D004308 4.5e-32 143.7 577 31.4
HanXRQChr12g0365641 Helianthus annuus HOM05D003795 ORTHO05D004308 1.3e-31 142.1 611 30.0
Sc20g0000860 Simmondsia chinensis HOM05D003795 ORTHO05D004308 3.8e-31 140.6 736 29.8
Aa31LG2G10060 Aethionema arabicum HOM05D003795 ORTHO05D004308 6.4e-31 139.8 739 31.0
AT5G37010 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 5.4e-30 136.7 638 31.3
Sabra16G0322500 Salix brachista HOM05D003795 ORTHO05D004308 9.3e-30 136.0 337 38.9
Ah.04g162800 Amaranthus hybridus HOM05D003795 ORTHO05D004308 2.7e-29 134.4 706 28.9
TPR.G15394 Trifolium pratense HOM05D003795 ORTHO05D004308 6.0e-29 133.3 543 32.2
Dinv19094 Davidia involucrata HOM05D003795 ORTHO05D004308 1.0e-28 132.5 297 41.4
AL7G45860 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 1.9e-27 128.3 637 30.3
Medtr5g076140 Medicago truncatula HOM05D003795 ORTHO05D004308 5.6e-27 126.7 611 30.0
Sp7g05490 Schrenkiella parvula HOM05D003795 ORTHO05D004308 1.3e-26 125.6 696 29.7
ECA238G3337 Erigeron canadensis HOM05D003795 ORTHO05D004308 2.0e-24 118.2 632 28.8
Aqoxy2G03712 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 4.5e-24 117.1 193 47.2
BcaB06g27061 Brassica carinata HOM05D003795 ORTHO05D004308 9.9e-24 115.9 567 30.2
Carub.0007s3228 Capsella rubella HOM05D003795 ORTHO05D004308 1.3e-23 115.5 574 31.4
Aa31LG9G17690 Aethionema arabicum HOM05D003795 ORTHO05D004308 3.2e-22 110.9 696 29.2
CARHR216000 Cardamine hirsuta HOM05D003795 ORTHO05D004308 9.3e-22 109.4 621 30.0
Sp5g20650 Schrenkiella parvula HOM05D003795 ORTHO05D004308 9.3e-22 109.4 586 28.3
Thhalv10018248m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 1.2e-21 109.0 596 30.7
BcaC02g09547 Brassica carinata HOM05D003795 ORTHO05D004308 2.7e-21 107.8 621 29.8
Os04g0528600 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 6.0e-21 106.7 516 31.0
unitig_748.g8624 Utricularia gibba HOM05D003795 ORTHO05D004308 6.0e-21 106.7 569 29.2
AUR62017269 Chenopodium quinoa HOM05D003795 ORTHO05D004308 1.3e-20 105.5 585 29.7
Atru.chr1.2190 Acer truncatum HOM05D003795 ORTHO05D004308 2.3e-20 104.8 580 29.0
TAR629G1700 Trochodendron aralioides HOM05D003795 ORTHO05D004308 2.3e-20 104.8 424 33.7
C04p43990 Brassica napus HOM05D003795 ORTHO05D004308 6.7e-20 103.2 617 28.8
MD12G1074700 Malus domestica HOM05D003795 ORTHO05D004308 2.5e-19 101.3 584 28.9
AL2G22840 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 3.3e-19 100.9 560 29.8
BolC4t25981H Brassica oleracea HOM05D003795 ORTHO05D004308 7.4e-19 99.8 620 28.4
Carub.0002s1153 Capsella rubella HOM05D003795 ORTHO05D004308 9.6e-19 99.4 587 29.6
Oeu012503.1 Olea europaea HOM05D003795 ORTHO05D004308 9.6e-19 99.4 223 38.6
CARHR057540 Cardamine hirsuta HOM05D003795 ORTHO05D004308 4.8e-18 97.1 560 28.2
AT1G65710 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 3.1e-17 94.4 553 29.8
VMungo1215G2457 Vigna mungo HOM05D003795 ORTHO05D004308 2.0e-16 91.7 300 32.7
Thhalv10018468m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 3.4e-16 90.9 589 27.5
Zm00001eb075920 Zea mays HOM05D003795 ORTHO05D004308 4.9e-15 87.0 523 27.9
Zm00001eb427110 Zea mays HOM05D003795 ORTHO05D004308 4.9e-15 87.0 513 30.2
Lsat_1_v5_gn_8_114961 Lactuca sativa HOM05D003795 ORTHO05D004308 6.5e-15 86.7 476 28.6
A04p10490 Brassica napus HOM05D003795 ORTHO05D004308 4.2e-14 84.0 379 32.2
AUR62010626 Chenopodium quinoa HOM05D003795 ORTHO05D004308 1.8e-12 78.6 173 38.2
CDE08G0767 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 2.8e-10 71.2 651 25.2
HPP92_013140 Vanilla planifolia HOM05D003795 ORTHO05D004308 4.8e-10 70.5 589 28.4
Zm00001eb185660 Zea mays HOM05D003795 ORTHO05D004308 6.3e-10 70.1 515 27.8
AUR62010625 Chenopodium quinoa HOM05D003795 ORTHO05D004308 8.2e-10 69.7 167 40.1
Lalb_Chr10g0103891 Lupinus albus HOM05D003795 ORTHO05D004308 1.1e-09 69.3 396 28.3
CDE07G0419 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 2.4e-09 68.2 481 27.4
VMungo1383G0923 Vigna mungo HOM05D003795 ORTHO05D004308 9.0e-09 66.2 131 40.5
Sabra16G0322400 Salix brachista HOM05D003795 ORTHO05D004308 2.9e-07 61.2 115 40.9
CDE04G0398 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 3.8e-07 60.8 315 30.2
Prupe.7G058800 Prunus persica HOM05D003795 ORTHO05D004308 3.8e-07 60.8 148 39.9
Psat0ss9816g0080 Pisum sativum HOM05D004417 ORTHO05D005528 3.2e-06 57.8 178 34.3


User provided reference genes

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