Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g036310.4 Solanum lycopersicum HOM05D006535 ORTHO05D008548 3.4e-59 231.5 118 100.0
Sopen02g011690 Solanum pennellii HOM05D006535 ORTHO05D008548 2.4e-41 172.2 132 72.7
PGSC0003DMG401021462 Solanum tuberosum HOM05D006535 ORTHO05D008548 2.7e-40 168.7 135 70.4
CAN.G23.21 Capsicum annuum HOM05D006535 ORTHO05D008548 3.0e-31 138.7 82 84.1
Nitab4.5_0000005g0020 Nicotiana tabacum HOM05D006535 ORTHO05D008548 6.6e-31 137.5 83 85.5
Nitab4.5_0002668g0020 Nicotiana tabacum HOM05D006535 ORTHO05D008548 1.5e-30 136.3 83 84.3
Dinv13934 Davidia involucrata HOM05D006535 ORTHO05D008548 7.1e-25 117.5 130 53.1
MSTRG.14630 Avicennia marina HOM05D006535 ORTHO05D008548 2.1e-24 115.9 135 52.6
Hma1.2p1_1358F.1_g277940 Hydrangea macrophylla HOM05D006535 ORTHO05D008548 4.6e-24 114.8 132 50.8
Peaxi162Scf00294g01013 Petunia axillaris HOM05D006535 ORTHO05D008548 4.6e-24 114.8 132 55.3
Oeu049693.4 Olea europaea HOM05D006535 ORTHO05D008548 1.0e-23 113.6 147 48.3
Lsat_1_v5_gn_1_129581 Lactuca sativa HOM05D006535 ORTHO05D008548 3.0e-23 112.1 134 50.0
HanXRQChr01g0006511 Helianthus annuus HOM05D006535 ORTHO05D008548 1.9e-22 109.4 134 48.5
Actinidia11871 Actinidia chinensis HOM05D006535 ORTHO05D008548 2.8e-21 105.5 133 48.9
Cc09_g01280 Coffea canephora HOM05D006535 ORTHO05D008548 1.4e-20 103.2 136 48.5
Duzib235G1465 Durio zibethinus HOM05D006535 ORTHO05D008548 2.4e-20 102.4 153 46.4
COL.COLO4_37574 Corchorus olitorius HOM05D006535 ORTHO05D008548 5.3e-20 101.3 151 44.4
PGR042G2820 Punica granatum HOM05D006535 ORTHO05D008548 6.9e-20 100.9 149 45.0
GSVIVG01012659001 Vitis vinifera HOM05D006535 ORTHO05D008548 9.0e-20 100.5 155 42.6
Rhsim02G0105100 Rhododendron simsii HOM05D006535 ORTHO05D008548 1.2e-19 100.1 133 47.4
CiPaw.09G097300 Carya illinoinensis HOM05D006535 ORTHO05D008548 2.6e-19 99.0 140 46.4
Glyma.09G007100 Glycine max HOM05D006535 ORTHO05D008548 4.5e-19 98.2 82 62.2
Thecc.06G227200 Theobroma cacao HOM05D006535 ORTHO05D008548 4.5e-19 98.2 144 45.8
CANSAT56G3727 Cannabis sativa HOM05D006535 ORTHO05D008548 7.6e-19 97.4 150 43.3
TAR626G0131 Trochodendron aralioides HOM05D006535 ORTHO05D008548 3.8e-18 95.1 148 40.5
TWI38G0380 Tripterygium wilfordii HOM05D006535 ORTHO05D008548 4.9e-18 94.7 145 45.5
TPR.G33068 Trifolium pratense HOM05D006535 ORTHO05D008548 6.4e-18 94.4 84 56.0
MD05G1351700 Malus domestica HOM05D006535 ORTHO05D008548 8.4e-18 94.0 96 55.2
Cfa000168 Carpinus fangiana HOM05D006535 ORTHO05D008548 1.1e-17 93.6 134 47.0
Haze_06851 Corylus avellana HOM05D006535 ORTHO05D008548 1.1e-17 93.6 134 47.0
Glyma.15G111500 Glycine max HOM05D006535 ORTHO05D008548 1.1e-17 93.6 82 59.8
Lj6g0003188 Lotus japonicus HOM05D006535 ORTHO05D008548 1.4e-17 93.2 81 59.3
QL05p072061 Quercus lobata HOM05D006535 ORTHO05D008548 1.4e-17 93.2 142 43.7
Gohir.A10G011200 Gossypium hirsutum HOM05D006535 ORTHO05D008548 2.4e-17 92.4 146 43.8
Medtr2g024310 Medicago truncatula HOM05D006535 ORTHO05D008548 2.4e-17 92.4 84 56.0
Psat1g177760 Pisum sativum HOM05D006535 ORTHO05D008548 2.4e-17 92.4 143 42.0
Lalb_Chr18g0056581 Lupinus albus HOM05D006535 ORTHO05D008548 3.2e-17 92.0 82 58.5
Migut.H01587 Erythranthe guttata HOM05D006535 ORTHO05D008548 4.2e-17 91.7 143 42.7
Manes.17G027900 Manihot esculenta HOM05D006535 ORTHO05D008548 4.2e-17 91.7 89 51.7
unitig_61.g26097 Utricularia gibba HOM05D006535 ORTHO05D008548 4.2e-17 91.7 81 63.0
FAN21G0938 Fragaria x ananassa HOM05D006535 ORTHO05D008548 7.1e-17 90.9 139 42.4
Hma1.2p1_1358F.1_g277950 Hydrangea macrophylla HOM05D006535 ORTHO05D008548 7.1e-17 90.9 76 59.2
arahy.Tifrunner.gnm1.ann1.P3I999 Arachis hypogaea HOM05D006535 ORTHO05D008548 9.3e-17 90.5 80 61.2
FvH4_3g01470 Fragaria vesca HOM05D006535 ORTHO05D008548 9.3e-17 90.5 139 41.7
ECA248G3623 Erigeron canadensis HOM05D006535 ORTHO05D008548 1.2e-16 90.1 76 59.2
Gohir.D10G010800 Gossypium hirsutum HOM05D006535 ORTHO05D008548 1.2e-16 90.1 146 43.2
Gorai.011G011900 Gossypium raimondii HOM05D006535 ORTHO05D008548 1.2e-16 90.1 146 43.2
Phvul.006G146200 Phaseolus vulgaris HOM05D006535 ORTHO05D008548 2.1e-16 89.4 82 56.1
RcHm_v2.0_Chr5g0002321 Rosa chinensis HOM05D006535 ORTHO05D008548 2.7e-16 89.0 143 42.7
Eucgr.E03992 Eucalyptus grandis HOM05D006535 ORTHO05D008548 3.5e-16 88.6 151 40.4
VMungo0540G1326 Vigna mungo HOM05D006535 ORTHO05D008548 3.5e-16 88.6 82 54.9
arahy.Tifrunner.gnm1.ann1.H9DKU3 Arachis hypogaea HOM05D006535 ORTHO05D008548 7.9e-16 87.4 80 60.0
Ciclev10015047m.g Citrus clementina HOM05D006535 ORTHO05D008548 1.0e-15 87.0 82 54.9
Prupe.I000100 Prunus persica HOM05D006535 ORTHO05D008548 1.0e-15 87.0 95 53.7
AUR62012752 Chenopodium quinoa HOM05D006535 ORTHO05D008548 3.9e-15 85.1 155 43.2
MELO3C021729.2 Cucumis melo HOM05D006535 ORTHO05D008548 3.9e-15 85.1 147 41.5
CsaV3_1G046130 Cucumis sativus L. HOM05D006535 ORTHO05D008548 6.7e-15 84.3 147 40.8
vmacro15802 Vaccinium macrocarpon HOM05D006535 ORTHO05D008548 6.7e-15 84.3 82 53.7
Ah.09g234560 Amaranthus hybridus HOM05D006535 ORTHO05D008548 1.1e-14 83.6 147 39.5
Hund23439 Selenicereus undatus HOM05D006535 ORTHO05D008548 1.1e-14 83.6 77 57.1
Sc05g0009420 Simmondsia chinensis HOM05D006535 ORTHO05D008548 1.9e-14 82.8 153 39.9
Sabra04G0002800 Salix brachista HOM05D006535 ORTHO05D008548 2.5e-14 82.4 148 39.2
AT4G04320 Arabidopsis thaliana HOM05D006535 ORTHO05D008548 3.3e-14 82.0 148 37.2
Ca_00689_v3 Cicer arietinum L. HOM05D006535 ORTHO05D008548 3.3e-14 82.0 82 53.7
THA.LOC104812977 Tarenaya hassleriana HOM05D006535 ORTHO05D008548 3.3e-14 82.0 140 37.9
Nn1g07251 Nelumbo nucifera HOM05D006535 ORTHO05D008548 1.3e-13 80.1 82 48.8
Potri.004G005500 Populus trichocarpa HOM05D006535 ORTHO05D008548 1.3e-13 80.1 151 38.4
Potri.011G010400 Populus trichocarpa HOM05D006535 ORTHO05D008548 1.3e-13 80.1 86 50.0
PSO541G2423 Papaver somniferum HOM05D006535 ORTHO05D008548 2.1e-13 79.3 146 34.2
AL6G47860 Arabidopsis lyrata HOM05D006535 ORTHO05D008548 4.8e-13 78.2 140 37.1
Carub.0006s3215 Capsella rubella HOM05D006535 ORTHO05D008548 6.2e-13 77.8 132 38.6
Aqoxy1G03005 Aquilegia oxysepala HOM05D006535 ORTHO05D008548 1.8e-12 76.3 79 50.6
Sp6g04530 Schrenkiella parvula HOM05D006535 ORTHO05D008548 3.1e-12 75.5 147 37.4
AUR62021906 Chenopodium quinoa HOM05D006535 ORTHO05D008548 5.3e-12 74.7 75 53.3
Sed0002831 Sechium edule HOM05D006535 ORTHO05D008548 5.3e-12 74.7 82 50.0
BcaB01g02601 Brassica carinata HOM05D006535 ORTHO05D008548 9.0e-12 73.9 129 36.4
DCAR_024986 Daucus carota HOM05D006535 ORTHO05D008548 1.2e-11 73.6 85 49.4
Aa31LG9G9880 Aethionema arabicum HOM05D006535 ORTHO05D008548 1.5e-11 73.2 86 46.5
BraA03t12182Z Brassica rapa HOM05D006535 ORTHO05D008548 1.5e-11 73.2 77 50.6
BcaC01g04564 Brassica carinata HOM05D006535 ORTHO05D008548 2.0e-11 72.8 129 37.2
BolC3t15931H Brassica oleracea HOM05D006535 ORTHO05D008548 2.0e-11 72.8 129 37.2
C03p36220 Brassica napus HOM05D006535 ORTHO05D008548 2.6e-11 72.4 71 50.7
RcHm_v2.0_Chr5g0002771 Rosa chinensis HOM05D006535 ORTHO05D008548 2.6e-11 72.4 68 52.9
A03p29930 Brassica napus HOM05D006535 ORTHO05D008548 3.4e-11 72.0 135 37.0
CARHR253140 Cardamine hirsuta HOM05D006535 ORTHO05D008548 3.4e-11 72.0 135 37.0
Thhalv10028619m.g Eutrema salsugineum HOM05D006535 ORTHO05D008548 4.5e-11 71.6 67 52.2
ClCG01G009650 Citrullus lanatus HOM05D006535 ORTHO05D008548 7.6e-11 70.9 95 44.2
CDE06G1909 Ceratophyllum demersum HOM05D006535 ORTHO05D008548 2.9e-10 68.9 137 38.0
ATR0686G032 Amborella trichopoda HOM05D006535 ORTHO05D008548 3.2e-09 65.5 80 38.8
HPP92_010356 Vanilla planifolia HOM05D006535 ORTHO05D008548 9.3e-09 63.9 121 37.2
SEGI_21824 Sequoiadendron giganteum HOM05D006535 ORTHO05D008548 6.7e-07 57.8 122 32.8


User provided reference genes

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