Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g033070.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 1.6e-109 399.4 202 100.0
Sopen02g011450 Solanum pennellii HOM05D000461 ORTHO05D005424 6.5e-103 377.5 201 94.5
Sopen05g034010 Solanum pennellii HOM05D004732 ORTHO05D005424 1.1e-102 376.7 201 94.0
PGSC0003DMG400044193 Solanum tuberosum HOM05D004732 ORTHO05D005424 3.5e-96 355.1 201 89.1
PGSC0003DMG402023369 Solanum tuberosum HOM05D004732 ORTHO05D005424 3.5e-96 355.1 201 89.1
Nitab4.5_0000096g0300 Nicotiana tabacum HOM05D004732 ORTHO05D005424 2.2e-74 282.7 209 70.3
Peaxi162Scf00176g00155 Petunia axillaris HOM05D004732 ORTHO05D005424 1.6e-72 276.6 204 69.1
Nitab4.5_0001760g0030 Nicotiana tabacum HOM05D004732 ORTHO05D005424 5.0e-71 271.6 211 69.2
Nitab4.5_0001450g0120 Nicotiana tabacum HOM05D004732 ORTHO05D005424 8.9e-60 234.2 207 58.0
CAN.G321.58 Capsicum annuum HOM05D004732 ORTHO05D005424 9.8e-59 230.7 192 59.9
Nitab4.5_0006187g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 2.9e-58 229.2 202 59.4
CAN.G694.37 Capsicum annuum HOM05D004732 ORTHO05D005424 1.6e-56 223.4 158 73.4
Solyc11g008310.3 Solanum lycopersicum HOM05D004732 ORTHO05D005424 2.7e-56 222.6 202 58.9
Peaxi162Scf00145g01111 Petunia axillaris HOM05D004732 ORTHO05D005424 4.6e-56 221.9 190 59.5
PGSC0003DMG400007420 Solanum tuberosum HOM05D004732 ORTHO05D005424 6.0e-56 221.5 202 57.9
Sopen11g004120 Solanum pennellii HOM05D004732 ORTHO05D005424 7.8e-56 221.1 202 58.4
Sopen05g019060 Solanum pennellii HOM05D004732 ORTHO05D005424 1.0e-55 220.7 182 64.8
Nitab4.5_0001359g0060 Nicotiana tabacum HOM05D004732 ORTHO05D005424 8.6e-55 217.6 171 65.5
Solyc05g024140.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 3.6e-53 212.2 132 82.6
CSS0040483 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 6.8e-52 208.0 197 53.3
CSS0018200 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 8.9e-52 207.6 197 53.8
Hma1.2p1_0145F.1_g065340 Hydrangea macrophylla HOM05D004732 ORTHO05D005424 8.9e-52 207.6 178 59.0
CSS0011754 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 2.6e-51 206.1 178 57.3
Haze_16742 Corylus avellana HOM05D004732 ORTHO05D005424 2.6e-51 206.1 171 60.8
CSS0002562 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 3.4e-51 205.7 178 57.3
vmacro07120 Vaccinium macrocarpon HOM05D004732 ORTHO05D005424 5.8e-51 204.9 183 56.3
Dinv36389 Davidia involucrata HOM05D004732 ORTHO05D005424 7.6e-51 204.5 179 56.4
CiPaw.01G268400 Carya illinoinensis HOM05D004732 ORTHO05D005424 9.9e-51 204.1 178 58.4
Ciclev10033517m.g Citrus clementina HOM05D004732 ORTHO05D005424 1.3e-50 203.8 170 58.8
QL08p054295 Quercus lobata HOM05D004732 ORTHO05D005424 4.9e-50 201.8 200 53.5
Actinidia18609 Actinidia chinensis HOM05D004732 ORTHO05D005424 1.1e-49 200.7 177 55.9
CANSAT56G1580 Cannabis sativa HOM05D004732 ORTHO05D005424 5.4e-49 198.4 178 57.3
Cfa001806 Carpinus fangiana HOM05D004732 ORTHO05D005424 5.4e-49 198.4 171 59.1
Potri.008G035000 Populus trichocarpa HOM05D004732 ORTHO05D005424 5.4e-49 198.4 198 52.5
RhsimUnG0118800 Rhododendron simsii HOM05D004732 ORTHO05D005424 7.1e-49 198.0 172 57.6
Prupe.2G208500 Prunus persica HOM05D004732 ORTHO05D005424 9.2e-49 197.6 193 52.8
Thecc.10G084000 Theobroma cacao HOM05D004732 ORTHO05D005424 9.2e-49 197.6 198 52.5
GSVIVG01016214001 Vitis vinifera HOM05D004732 ORTHO05D005424 1.2e-48 197.2 199 52.8
Sabra08G0023400 Salix brachista HOM05D004732 ORTHO05D005424 1.6e-48 196.8 214 50.0
Atru.chr12.848 Acer truncatum HOM05D004732 ORTHO05D005424 2.1e-48 196.4 168 56.5
Solyc05g055560.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 2.7e-48 196.1 201 57.2
Duzib114G0073 Durio zibethinus HOM05D004732 ORTHO05D005424 3.5e-48 195.7 176 57.4
FAN10G1669 Fragaria x ananassa HOM05D004732 ORTHO05D005424 3.5e-48 195.7 194 53.6
Cpa.g.sc53.137 Carica papaya HOM05D004732 ORTHO05D005424 1.7e-47 193.4 171 56.7
FAN03G2537 Fragaria x ananassa HOM05D004732 ORTHO05D005424 1.7e-47 193.4 194 53.1
Actinidia06737 Actinidia chinensis HOM05D004732 ORTHO05D005424 2.3e-47 193.0 177 55.9
FAN10G0773 Fragaria x ananassa HOM05D004732 ORTHO05D005424 3.0e-47 192.6 194 52.6
Cc02_g10890 Coffea canephora HOM05D004732 ORTHO05D005424 3.9e-47 192.2 197 48.2
FvH4_7g18740 Fragaria vesca HOM05D004732 ORTHO05D005424 6.6e-47 191.4 194 52.6
FAN06G4015 Fragaria x ananassa HOM05D004732 ORTHO05D005424 6.6e-47 191.4 194 52.6
FAN06G4691 Fragaria x ananassa HOM05D004732 ORTHO05D005424 6.6e-47 191.4 194 52.6
Duzib106G0451 Durio zibethinus HOM05D004732 ORTHO05D005424 8.6e-47 191.0 179 54.7
FAN01G0719 Fragaria x ananassa HOM05D004732 ORTHO05D005424 2.5e-46 189.5 194 52.6
TWI63G1095 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 2.5e-46 189.5 178 54.5
MELO3C019827.2 Cucumis melo HOM05D004732 ORTHO05D005424 4.3e-46 188.7 171 56.1
Eucgr.G02869 Eucalyptus grandis HOM05D004732 ORTHO05D005424 5.6e-46 188.3 203 50.2
Manes.07G133148 Manihot esculenta HOM05D004732 ORTHO05D005424 7.3e-46 188.0 195 49.2
RcHm_v2.0_Chr1g0362511 Rosa chinensis HOM05D004732 ORTHO05D005424 7.3e-46 188.0 193 50.8
MSTRG.9148 Avicennia marina HOM05D004732 ORTHO05D005424 9.6e-46 187.6 178 52.8
ClCG08G007740 Citrullus lanatus HOM05D004732 ORTHO05D005424 1.2e-45 187.2 172 55.8
Gohir.A10G202350 Gossypium hirsutum HOM05D004732 ORTHO05D005424 1.2e-45 187.2 182 54.9
Potri.010G227400 Populus trichocarpa HOM05D004732 ORTHO05D005424 1.6e-45 186.8 196 51.5
PGR142G3551 Punica granatum HOM05D004732 ORTHO05D005424 1.6e-45 186.8 197 50.8
Sed0004517 Sechium edule HOM05D004732 ORTHO05D005424 2.8e-45 186.0 202 48.5
CiPaw.02G171900 Carya illinoinensis HOM05D004732 ORTHO05D005424 6.2e-45 184.9 171 57.9
Dinv31236 Davidia involucrata HOM05D004732 ORTHO05D005424 8.1e-45 184.5 200 51.0
COL.COLO4_34217 Corchorus olitorius HOM05D004732 ORTHO05D005424 1.1e-44 184.1 177 51.4
Gohir.D10G210533 Gossypium hirsutum HOM05D004732 ORTHO05D005424 1.8e-44 183.3 182 53.8
Gorai.011G236000 Gossypium raimondii HOM05D004732 ORTHO05D005424 1.8e-44 183.3 182 53.8
Peaxi162Scf00253g00036 Petunia axillaris HOM05D004732 ORTHO05D005424 1.8e-44 183.3 162 59.3
Migut.F01953 Erythranthe guttata HOM05D004732 ORTHO05D005424 3.1e-44 182.6 181 51.4
Gohir.A06G168400 Gossypium hirsutum HOM05D004732 ORTHO05D005424 4.0e-44 182.2 178 52.8
Gorai.010G207000 Gossypium raimondii HOM05D004732 ORTHO05D005424 4.0e-44 182.2 190 51.1
Gohir.D06G176100 Gossypium hirsutum HOM05D004732 ORTHO05D005424 5.2e-44 181.8 178 52.2
Nitab4.5_0001278g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 8.9e-44 181.0 134 67.9
Peaxi162Scf00253g00416 Petunia axillaris HOM05D004732 ORTHO05D005424 2.6e-43 179.5 138 66.7
Manes.10G050600 Manihot esculenta HOM05D004732 ORTHO05D005424 3.4e-43 179.1 195 47.7
DCAR_019084 Daucus carota HOM05D004732 ORTHO05D005424 7.6e-43 177.9 191 50.3
MD01G1102900 Malus domestica HOM05D004732 ORTHO05D005424 7.6e-43 177.9 194 49.0
arahy.Tifrunner.gnm1.ann1.02EZ4F Arachis hypogaea HOM05D004732 ORTHO05D005424 9.9e-43 177.6 199 46.2
Sabra10G0175400 Salix brachista HOM05D004732 ORTHO05D005424 9.9e-43 177.6 196 50.0
TWI38G0470 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 9.9e-43 177.6 170 52.9
SalBow4G1144 Salvia bowleyana HOM05D004732 ORTHO05D005424 2.9e-42 176.0 178 48.3
arahy.Tifrunner.gnm1.ann1.94M352 Arachis hypogaea HOM05D004732 ORTHO05D005424 6.4e-42 174.9 199 45.7
Oeu013844.1 Olea europaea HOM05D004732 ORTHO05D005424 2.4e-41 172.9 196 48.5
MBI02_g03608_MAGBIO Magnolia biondii HOM05D004732 ORTHO05D005424 4.2e-41 172.2 168 51.8
Duzib128G0895 Durio zibethinus HOM05D004732 ORTHO05D005424 9.3e-41 171.0 171 53.8
Nn3g18730 Nelumbo nucifera HOM05D004732 ORTHO05D005424 2.7e-40 169.5 198 46.0
CARHR133920 Cardamine hirsuta HOM05D004732 ORTHO05D005424 6.6e-39 164.9 175 49.1
HanXRQChr08g0218501 Helianthus annuus HOM05D004732 ORTHO05D005424 6.6e-39 164.9 169 49.7
Sp4g21500 Schrenkiella parvula HOM05D004732 ORTHO05D005424 6.6e-39 164.9 171 50.9
TAR375G0434 Trochodendron aralioides HOM05D004732 ORTHO05D005424 6.6e-39 164.9 178 48.9
Lalb_Chr02g0152071 Lupinus albus HOM05D004732 ORTHO05D005424 1.5e-38 163.7 180 45.6
AL4G36450 Arabidopsis lyrata HOM05D004732 ORTHO05D005424 1.9e-38 163.3 171 49.1
CDE12G0653 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 2.5e-38 162.9 195 45.6
Thhalv10017199m.g Eutrema salsugineum HOM05D004732 ORTHO05D005424 4.3e-38 162.2 171 50.3
CSS0026895 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 9.6e-38 161.0 159 52.2
Medtr1g050538 Medicago truncatula HOM05D004732 ORTHO05D005424 1.3e-37 160.6 198 44.4
Ah.05g176860 Amaranthus hybridus HOM05D004732 ORTHO05D005424 1.6e-37 160.2 210 41.9
PSO782G0035 Papaver somniferum HOM05D004732 ORTHO05D005424 1.6e-37 160.2 158 52.5
Aqoxy5G04328 Aquilegia oxysepala HOM05D004732 ORTHO05D005424 2.8e-37 159.5 188 44.7
BolC3t14980H Brassica oleracea HOM05D004732 ORTHO05D005424 3.6e-37 159.1 173 49.7
CsaV3_6G036730 Cucumis sativus L. HOM05D004732 ORTHO05D005424 3.6e-37 159.1 152 52.6
Carub.0004s2121 Capsella rubella HOM05D004732 ORTHO05D005424 4.8e-37 158.7 175 48.0
Aa31LG5G20320 Aethionema arabicum HOM05D004732 ORTHO05D005424 6.2e-37 158.3 184 47.8
AT2G39170 Arabidopsis thaliana HOM05D004732 ORTHO05D005424 6.2e-37 158.3 171 48.5
C03p25950 Brassica napus HOM05D004732 ORTHO05D005424 6.2e-37 158.3 173 49.7
Psat6g092840 Pisum sativum HOM05D004732 ORTHO05D005424 6.2e-37 158.3 198 44.9
BcaB01g03649 Brassica carinata HOM05D004732 ORTHO05D005424 8.1e-37 157.9 171 49.7
Glyma.10G207600 Glycine max HOM05D004732 ORTHO05D005424 1.4e-36 157.1 178 45.5
Lj5g0023337 Lotus japonicus HOM05D004732 ORTHO05D005424 1.4e-36 157.1 201 42.8
EL10Ac1g00627 Beta vulgaris HOM05D004732 ORTHO05D005424 1.8e-36 156.8 187 44.9
A03p21880 Brassica napus HOM05D004732 ORTHO05D005424 3.1e-36 156.0 171 48.5
BraA03t11424Z Brassica rapa HOM05D004732 ORTHO05D005424 3.1e-36 156.0 171 48.5
PSO063G3184 Papaver somniferum HOM05D004732 ORTHO05D005424 6.9e-36 154.8 158 51.9
Lalb_Chr03g0036231 Lupinus albus HOM05D004732 ORTHO05D005424 2.0e-35 153.3 181 43.1
DCAR_006412 Daucus carota HOM05D004732 ORTHO05D005424 2.6e-35 152.9 170 44.1
Hund26901 Selenicereus undatus HOM05D004732 ORTHO05D005424 2.6e-35 152.9 188 45.2
Sc15g0007120 Simmondsia chinensis HOM05D000232 ORTHO05D000145 4.4e-35 152.1 162 49.4
TPR.G29265 Trifolium pratense HOM05D004732 ORTHO05D005424 4.4e-35 152.1 171 46.8
THA.LOC104825219 Tarenaya hassleriana HOM05D004732 ORTHO05D005424 7.6e-35 151.4 177 45.8
Medtr1g094180 Medicago truncatula HOM05D004732 ORTHO05D005424 9.9e-35 151.0 196 44.9
TPR.G10292 Trifolium pratense HOM05D004732 ORTHO05D005424 2.2e-34 149.8 187 46.0
Psat6g179960 Pisum sativum HOM05D004732 ORTHO05D005424 1.1e-33 147.5 185 43.2
BcaC02g12913 Brassica carinata HOM05D004732 ORTHO05D005424 4.2e-33 145.6 176 47.2
SGA_v2.0_scaffold13G06383 Striga asiatica HOM05D002264 ORTHO05D002413 7.1e-33 144.8 182 45.6
AUR62034508 Chenopodium quinoa HOM05D004732 ORTHO05D005424 9.3e-33 144.4 186 41.9
AUR62014489 Chenopodium quinoa HOM05D004732 ORTHO05D005424 1.6e-32 143.7 186 41.9
Lj2C21T4 Lonicera japonica HOM05D004732 ORTHO05D005424 1.6e-32 143.7 187 45.5
Lj5g0007347 Lotus japonicus HOM05D004732 ORTHO05D005424 4.6e-32 142.1 200 41.5
Lsat_1_v5_gn_8_20841 Lactuca sativa HOM05D004732 ORTHO05D005424 7.8e-32 141.4 186 43.5
Glyma.10G096300 Glycine max HOM05D004732 ORTHO05D005424 2.3e-31 139.8 205 42.0
Phvul.007G246300 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 3.0e-31 139.4 159 47.8
Ca_10542_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 1.1e-30 137.5 180 43.3
Ca_15771_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 1.1e-30 137.5 180 43.3
Phvul.007G099100 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 1.9e-30 136.7 178 42.7
VMungo0720G2855 Vigna mungo HOM05D004732 ORTHO05D005424 1.9e-30 136.7 120 53.3
unitig_37.g12315 Utricularia gibba HOM05D004732 ORTHO05D005424 3.3e-30 136.0 157 46.5
ATR0810G210 Amborella trichopoda HOM05D004732 ORTHO05D005424 4.8e-29 132.1 200 38.5
CDE04G0408 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 6.2e-29 131.7 150 46.7
CSS0029312 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.4e-28 130.6 105 60.0
VMungo0720G2178 Vigna mungo HOM05D004732 ORTHO05D005424 3.1e-28 129.4 177 42.4
Ca_10759_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 5.3e-28 128.6 116 52.6
HanXRQChr12g0368861 Helianthus annuus HOM05D004732 ORTHO05D005424 6.9e-28 128.3 116 51.7
Os08g0152500 Oryza sativa ssp. japonica HOM05D004732 ORTHO05D005424 1.3e-26 124.0 197 36.5
Zm00001eb416240 Zea mays HOM05D004732 ORTHO05D005424 2.2e-26 123.2 160 40.0
Glyma.02G159000 Glycine max HOM05D004732 ORTHO05D005424 2.4e-25 119.8 119 49.6
Solyc05g024170.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 5.4e-25 118.6 73 80.8
HPP92_012913 Vanilla planifolia HOM05D001191 ORTHO05D000979 2.4e-20 103.2 107 45.8
CSS0002308 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 2.9e-18 96.3 122 44.3
AagrBONN_evm.TU.Sc2ySwM_117.3369 Anthoceros agrestis HOM05D004732 ORTHO05D005424 1.3e-13 80.9 197 29.4
SEGI_03345 Sequoiadendron giganteum HOM05D004732 ORTHO05D005424 9.0e-12 74.7 110 40.0
Pp3c13_19230 Physcomitrium patens HOM05D004732 ORTHO05D005424 1.5e-11 73.9 84 41.7
SMO141G0002 Selaginella moellendorffii HOM05D004732 ORTHO05D005424 7.6e-11 71.6 175 28.0
RcHm_v2.0_Chr1g0384391 Rosa chinensis HOM05D004732 ORTHO05D005424 2.3e-07 60.1 95 36.8
HPP92_012890 Vanilla planifolia HOM05D004732 ORTHO05D005424 3.3e-06 56.2 104 32.7
CBR_g30284 Chara braunii HOM05D000004 ORTHO05D000002 9.7e-06 54.7 177 23.7


User provided reference genes

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