Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g032870.4 Solanum lycopersicum HOM05D004937 ORTHO05D006414 3.9e-271 937.6 477 100.0
Sopen02g011270 Solanum pennellii HOM05D004937 ORTHO05D006414 3.7e-250 867.8 451 97.8
PGSC0003DMG400019871 Solanum tuberosum HOM05D004937 ORTHO05D006414 1.6e-240 835.9 451 94.0
Nitab4.5_0000005g0300 Nicotiana tabacum HOM05D004937 ORTHO05D006414 2.6e-203 712.2 494 76.9
Nitab4.5_0011734g0010 Nicotiana tabacum HOM05D004937 ORTHO05D006414 4.5e-203 711.4 490 76.9
Peaxi162Scf00307g01425 Petunia axillaris HOM05D004937 ORTHO05D006414 8.5e-194 680.6 450 79.1
Peaxi162Scf00394g00019 Petunia axillaris HOM05D004937 ORTHO05D006414 1.4e-193 679.9 450 79.6
Cc09_g01540 Coffea canephora HOM05D004937 ORTHO05D000904 1.2e-144 517.3 480 56.9
CSS0033735 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 7.5e-142 508.1 461 59.9
Lj1A1232T94 Lonicera japonica HOM05D004937 ORTHO05D006414 1.1e-140 504.2 475 57.7
Rhsim02G0106300 Rhododendron simsii HOM05D004937 ORTHO05D006414 3.0e-138 496.1 483 57.8
vmacro15793 Vaccinium macrocarpon HOM05D004937 ORTHO05D006414 3.3e-137 492.7 456 59.2
CANSAT56G3877 Cannabis sativa HOM05D004937 ORTHO05D006414 2.1e-136 490.0 461 57.5
MSTRG.15996 Avicennia marina HOM05D004937 ORTHO05D006414 5.2e-135 485.3 510 54.9
Nn1g07169 Nelumbo nucifera HOM05D004937 ORTHO05D006414 1.1e-132 477.6 451 57.9
CiPaw.09G093200 Carya illinoinensis HOM05D004937 ORTHO05D006414 1.9e-132 476.9 451 58.8
QL05p072835 Quercus lobata HOM05D004937 ORTHO05D006414 7.1e-132 474.9 462 56.9
MD10G1323300 Malus domestica HOM05D004937 ORTHO05D006414 1.6e-131 473.8 477 55.3
Prupe.4G019000 Prunus persica HOM05D004937 ORTHO05D006414 1.7e-130 470.3 462 56.7
Haze_06813 Corylus avellana HOM05D004937 ORTHO05D006414 2.3e-130 469.9 451 57.9
Migut.M01330 Erythranthe guttata HOM05D004937 ORTHO05D000904 3.0e-130 469.5 474 54.9
GSVIVG01012711001 Vitis vinifera HOM05D004937 ORTHO05D000904 3.0e-130 469.5 463 57.5
TWI63G0901 Tripterygium wilfordii HOM05D004937 ORTHO05D006414 6.6e-130 468.4 457 58.2
Gohir.A06G207300 Gossypium hirsutum HOM05D004937 ORTHO05D006414 1.5e-129 467.2 477 56.0
Gohir.D06G214000 Gossypium hirsutum HOM05D004937 ORTHO05D006414 2.5e-129 466.5 477 56.2
Manes.16G005800 Manihot esculenta HOM05D004937 ORTHO05D006414 7.3e-129 464.9 461 57.0
Gorai.010G252100 Gossypium raimondii HOM05D004937 ORTHO05D006414 1.2e-128 464.2 459 57.1
SalBow8G2768 Salvia bowleyana HOM05D004937 ORTHO05D006414 1.2e-128 464.2 476 53.6
Thecc.06G222700 Theobroma cacao HOM05D004937 ORTHO05D006414 2.1e-128 463.4 455 56.5
DCAR_024931 Daucus carota HOM05D004937 ORTHO05D006414 2.8e-128 463.0 451 55.2
Glyma.07G261700 Glycine max HOM05D004937 ORTHO05D006414 8.1e-128 461.5 453 55.2
Sc24g0000210 Simmondsia chinensis HOM05D004937 ORTHO05D006414 8.1e-128 461.5 472 52.3
VMungo1215G2760 Vigna mungo HOM05D004937 ORTHO05D006414 1.1e-127 461.1 449 55.7
COL.COLO4_31792 Corchorus olitorius HOM05D004937 ORTHO05D006414 1.8e-127 460.3 452 56.6
PGR042G1615 Punica granatum HOM05D004937 ORTHO05D006414 4.0e-127 459.1 452 56.4
FvH4_3g01860 Fragaria vesca HOM05D004937 ORTHO05D006414 5.2e-127 458.8 486 55.3
RcHm_v2.0_Chr5g0002731 Rosa chinensis HOM05D004937 ORTHO05D006414 6.9e-127 458.4 488 54.7
Phvul.003G080000 Phaseolus vulgaris HOM05D004937 ORTHO05D006414 2.0e-126 456.8 483 53.2
Ciclev10014440m.g Citrus clementina HOM05D004937 ORTHO05D006414 5.8e-126 455.3 475 52.8
Potri.004G010400 Populus trichocarpa HOM05D004937 ORTHO05D006414 5.8e-126 455.3 510 51.6
Glyma.17G012400 Glycine max HOM05D004937 ORTHO05D006414 1.3e-125 454.1 450 54.0
Eucgr.D01342 Eucalyptus grandis HOM05D004937 ORTHO05D006414 2.2e-125 453.4 459 55.3
Sabra04G0005400 Salix brachista HOM05D004937 ORTHO05D006414 2.9e-125 453.0 514 52.9
FAN21G0664 Fragaria x ananassa HOM05D004937 ORTHO05D006414 1.1e-124 451.1 497 54.1
MELO3C002448.2 Cucumis melo HOM05D004937 ORTHO05D006414 2.4e-124 449.9 451 55.0
Lj4g0022599 Lotus japonicus HOM05D004937 ORTHO05D006414 9.3e-124 448.0 464 52.6
arahy.Tifrunner.gnm1.ann1.L1792D Arachis hypogaea HOM05D004937 ORTHO05D006414 2.1e-123 446.8 468 53.8
Hund23457 Selenicereus undatus HOM05D004937 ORTHO05D006414 4.6e-123 445.7 532 48.9
TAR624G0274 Trochodendron aralioides HOM05D004937 ORTHO05D006414 7.8e-123 444.9 451 56.8
Cpa.g.sc152.26 Carica papaya HOM05D004937 ORTHO05D006414 2.3e-122 443.4 451 55.2
Sed0026378 Sechium edule HOM05D004937 ORTHO05D006414 6.6e-122 441.8 449 53.9
CsaV3_1G010670 Cucumis sativus L. HOM05D004937 ORTHO05D006414 1.9e-121 440.3 451 54.5
Hma1.2p1_3370F.1_g335650 Hydrangea macrophylla HOM05D004937 ORTHO05D006414 5.6e-121 438.7 450 55.3
EL10Ac8g20076 Beta vulgaris HOM05D004937 ORTHO05D006414 1.6e-120 437.2 547 47.7
PSO541G5924 Papaver somniferum HOM05D004937 ORTHO05D006414 1.8e-119 433.7 462 53.0
CARHR012140 Cardamine hirsuta HOM05D004937 ORTHO05D006414 9.0e-119 431.4 482 50.4
PSO675G7903 Papaver somniferum HOM05D004937 ORTHO05D006414 1.2e-118 431.0 461 53.8
arahy.Tifrunner.gnm1.ann1.VWCB5J Arachis hypogaea HOM05D004937 ORTHO05D006414 1.5e-118 430.6 469 52.2
PSO675G1521 Papaver somniferum HOM05D004937 ORTHO05D006414 1.5e-118 430.6 461 52.7
AL1G22990 Arabidopsis lyrata HOM05D004937 ORTHO05D006414 2.6e-118 429.9 456 51.8
HanXRQChr15g0470651 Helianthus annuus HOM05D004937 ORTHO05D006414 2.6e-118 429.9 484 52.3
AT1G11800 Arabidopsis thaliana HOM05D004937 ORTHO05D006414 3.4e-118 429.5 460 51.3
Carub.0001s1147 Capsella rubella HOM05D004937 ORTHO05D006414 3.4e-118 429.5 467 52.0
Sp1g10430 Schrenkiella parvula HOM05D004937 ORTHO05D006414 3.4e-118 429.5 458 52.6
Thhalv10006713m.g Eutrema salsugineum HOM05D004937 ORTHO05D000904 9.9e-118 427.9 459 52.9
PSO541G2704 Papaver somniferum HOM05D004937 ORTHO05D006414 1.7e-117 427.2 461 53.6
Lsat_1_v5_gn_7_16360 Lactuca sativa HOM05D004937 ORTHO05D006414 2.2e-117 426.8 454 55.3
HPP92_001597 Vanilla planifolia HOM05D004937 ORTHO05D006414 1.4e-116 424.1 456 52.6
Aqoxy1G02086 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 1.9e-116 423.7 492 50.2
Lalb_Chr12g0196051 Lupinus albus HOM05D004937 ORTHO05D006414 1.9e-116 423.7 454 53.3
Medtr4g132300 Medicago truncatula HOM05D004937 ORTHO05D006414 3.2e-116 422.9 453 49.7
DCAR_028195 Daucus carota HOM05D004937 ORTHO05D006414 9.3e-116 421.4 458 51.7
HPP92_001591 Vanilla planifolia HOM05D004937 ORTHO05D006414 2.7e-115 419.9 455 52.3
ECA236G0630 Erigeron canadensis HOM05D004937 ORTHO05D006414 7.9e-115 418.3 466 53.0
Aa31LG1G2970 Aethionema arabicum HOM05D004937 ORTHO05D006414 2.3e-114 416.8 456 51.3
BcaB08g37429 Brassica carinata HOM05D004937 ORTHO05D006414 2.3e-114 416.8 476 48.3
BraA09t41776Z Brassica rapa HOM05D004937 ORTHO05D006414 3.0e-114 416.4 466 50.2
AUR62021933 Chenopodium quinoa HOM05D004937 ORTHO05D006414 2.5e-113 413.3 527 46.5
BolC8t52333H Brassica oleracea HOM05D004937 ORTHO05D006414 2.1e-112 410.2 458 50.9
unitig_748.g7590 Utricularia gibba HOM05D004937 ORTHO05D006414 2.8e-112 409.8 467 47.1
C08p47960 Brassica napus HOM05D004937 ORTHO05D006414 4.8e-112 409.1 459 50.5
BcaC07g41758 Brassica carinata HOM05D004937 ORTHO05D006414 3.1e-111 406.4 453 50.8
A09p64340 Brassica napus HOM05D004937 ORTHO05D007797 3.1e-111 406.4 467 49.0
THA.LOC104809500 Tarenaya hassleriana HOM05D004937 ORTHO05D006414 5.3e-111 405.6 458 49.3
TPR.G22185 Trifolium pratense HOM05D004937 ORTHO05D006414 1.9e-105 387.1 280 66.4
Os12g0414900 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 2.5e-105 386.7 478 45.4
Psat4g006200 Pisum sativum HOM05D004937 ORTHO05D006414 5.6e-105 385.6 267 67.0
QL05p072858 Quercus lobata HOM05D004937 ORTHO05D006414 2.2e-101 373.6 271 66.4
AUR62012723 Chenopodium quinoa HOM05D004937 ORTHO05D006414 2.5e-100 370.2 453 47.7
Haze_06812 Corylus avellana HOM05D004937 ORTHO05D006414 3.2e-100 369.8 356 54.8
Ah.14g087960 Amaranthus hybridus HOM05D004937 ORTHO05D006414 7.1e-100 368.6 531 45.6
HanXRQChr05g0129391 Helianthus annuus HOM05D004937 ORTHO05D006414 3.0e-98 363.2 284 62.3
PSO017G1772 Papaver somniferum HOM05D004937 ORTHO05D006414 1.3e-96 357.8 299 58.2
QL05p072840 Quercus lobata HOM05D004937 ORTHO05D006414 3.7e-96 356.3 273 63.0
Ca_21076_v3 Cicer arietinum L. HOM05D004937 ORTHO05D006414 1.4e-95 354.4 357 53.2
ATR0794G089 Amborella trichopoda HOM05D004937 ORTHO05D006414 1.8e-95 354.0 273 59.0
CDE02G2441 Ceratophyllum demersum HOM05D004937 ORTHO05D006414 9.0e-95 351.7 448 46.0
Zm00001eb043220 Zea mays HOM05D004937 ORTHO05D006414 4.5e-94 349.4 266 59.0
SEGI_33731 Sequoiadendron giganteum HOM05D004937 ORTHO05D006414 1.1e-92 344.7 273 59.0
SHI02217 Sapria himalayana HOM05D004937 ORTHO05D006414 3.2e-92 343.2 519 43.0
Dinv13907 Davidia involucrata HOM05D004937 ORTHO05D006414 4.6e-91 339.3 337 50.1
Potri.004G010900 Populus trichocarpa HOM05D004937 ORTHO05D006414 5.1e-90 335.9 310 57.4
Dinv20060 Davidia involucrata HOM05D004937 ORTHO05D006414 4.8e-88 329.3 280 57.9
Sed0013617 Sechium edule HOM05D004937 ORTHO05D006414 5.3e-87 325.9 230 67.4
Mapoly0028s0073 Marchantia polymorpha HOM05D004937 ORTHO05D006414 7.2e-84 315.5 273 55.3
Pp3c20_16850 Physcomitrium patens HOM05D004937 ORTHO05D006414 7.2e-84 315.5 266 55.6
Migut.M01331 Erythranthe guttata HOM05D004937 ORTHO05D006414 1.7e-80 304.3 293 52.9
SMO361G0593 Selaginella moellendorffii HOM05D004937 ORTHO05D006414 8.2e-80 302.0 263 57.4
AagrBONN_evm.TU.Sc2ySwM_368.2060 Anthoceros agrestis HOM05D004937 ORTHO05D006414 1.1e-79 301.6 247 59.1
CBR_g38366 Chara braunii HOM05D004937 ORTHO05D006414 5.3e-79 299.3 305 49.2
ClCG03G004640 Citrullus lanatus HOM05D004937 ORTHO05D006414 2.6e-78 297.0 194 71.6
HPP92_014181 Vanilla planifolia HOM05D004937 ORTHO05D006414 5.3e-71 272.7 282 50.0
CSS0005056 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 7.7e-70 268.9 177 70.1
Aqoxy3G03726 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 2.2e-69 267.3 278 48.9
Zm00001eb048580 Zea mays HOM05D004937 ORTHO05D006414 8.0e-67 258.8 191 61.3
Aqoxy4G00762 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 5.2e-66 256.1 283 48.8
Aqoxy5G03390 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 1.2e-54 218.4 226 47.8
CSS0029720 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 1.5e-52 211.5 271 45.0
Dinv13906 Davidia involucrata HOM05D004937 ORTHO05D006414 2.3e-50 204.1 286 39.9
Dinv13904 Davidia involucrata HOM05D004937 ORTHO05D006414 1.2e-49 201.8 245 54.3
CSS0048087 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 1.3e-48 198.4 271 42.4
QL05p072848 Quercus lobata HOM05D004937 ORTHO05D006414 1.4e-47 194.9 139 64.0
BcaB08g37427 Brassica carinata HOM05D004937 ORTHO05D006414 4.5e-46 189.9 178 52.8
BcaB08g37425 Brassica carinata HOM05D004937 ORTHO05D006414 4.4e-41 173.3 137 60.6
Mapoly0074s0008 Marchantia polymorpha HOM05D004937 ORTHO05D006414 1.8e-39 167.9 253 40.3
Psat6g178560 Pisum sativum HOM05D004937 ORTHO05D006414 4.1e-39 166.8 136 59.6
ClCG03G004650 Citrullus lanatus HOM05D000020 ORTHO05D000904 3.5e-38 163.7 263 43.0
Dinv13905 Davidia involucrata HOM05D004937 ORTHO05D006414 7.8e-38 162.5 109 67.9
SGA_v2.0_scaffold4G01909 Striga asiatica HOM05D004937 ORTHO05D006414 4.7e-35 153.3 281 43.8
PRCOL_00004553 Prasinoderma coloniale HOM05D004937 ORTHO05D006414 1.8e-34 151.4 292 33.9
Cre06.g305050 Chlamydomonas reinhardtii HOM05D004937 ORTHO05D006414 2.3e-34 151.0 299 33.1
PGSC0003DMG400026496 Solanum tuberosum HOM05D004937 ORTHO05D006414 2.3e-34 151.0 78 92.3
BcaB08g37428 Brassica carinata HOM05D004937 ORTHO05D006414 2.0e-33 147.9 257 39.3
MCO11G820 Micromonas commoda HOM05D004937 ORTHO05D006414 3.4e-33 147.1 291 34.4
Aqoxy3G02634 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 5.0e-29 133.3 165 43.0
AagrBONN_evm.TU.Sc2ySwM_368.2061 Anthoceros agrestis HOM05D004937 ORTHO05D006414 1.1e-23 115.5 119 48.7
Lj2C267G4 Lonicera japonica HOM05D004937 ORTHO05D006414 1.4e-23 115.2 98 54.1
Cre06.g305250 Chlamydomonas reinhardtii HOM05D004937 ORTHO05D006414 3.2e-23 114.0 347 27.4
PRCOL_00006577 Prasinoderma coloniale HOM05D004937 ORTHO05D006414 6.0e-22 109.8 354 27.4
TPR.G37060 Trifolium pratense HOM05D004937 ORTHO05D006414 5.6e-12 76.6 168 32.1
FAN25G1168 Fragaria x ananassa HOM05D004937 ORTHO05D006414 1.1e-10 72.4 110 41.8
Os10g0401100 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 4.0e-10 70.5 53 58.5
Atru.chr10.2244 Acer truncatum HOM05D004937 ORTHO05D006414 1.2e-09 68.9 129 44.2
PSO832G4260 Papaver somniferum HOM05D004937 ORTHO05D002819 1.5e-09 68.6 67 52.2
Dinv30719 Davidia involucrata HOM05D004937 ORTHO05D006414 1.3e-08 65.5 81 45.7
Os07g0510800 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 2.7e-06 57.8 65 44.6


User provided reference genes

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