Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g032600.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 4.0e-159 564.7 278 100.0
PGSC0003DMG400018011 Solanum tuberosum HOM05D004704 ORTHO05D005384 1.4e-119 433.3 369 64.0
PGSC0003DMG400004386 Solanum tuberosum HOM05D004704 ORTHO05D005384 3.9e-114 415.2 369 62.6
Solyc03g006230.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 8.1e-112 407.5 369 61.2
CAN.G2115.3 Capsicum annuum HOM05D004704 ORTHO05D005384 7.1e-108 394.4 369 59.1
Nitab4.5_0002076g0080 Nicotiana tabacum HOM05D004704 ORTHO05D005384 1.0e-106 390.6 390 55.6
Sopen03g002240 Solanum pennellii HOM05D004704 ORTHO05D005384 5.6e-105 384.8 354 60.7
Peaxi162Scf00200g00121 Petunia axillaris HOM05D004704 ORTHO05D005384 3.6e-104 382.1 369 56.9
Manes.17G053900 Manihot esculenta HOM05D004704 ORTHO05D005384 1.7e-98 363.2 390 53.1
PGR004G2343 Punica granatum HOM05D004704 ORTHO05D005384 1.6e-96 356.7 390 51.3
CSS0042475 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 2.8e-96 355.9 364 54.4
Potri.004G054500 Populus trichocarpa HOM05D004704 ORTHO05D005384 6.2e-96 354.8 390 52.1
Thecc.06G174000 Theobroma cacao HOM05D004704 ORTHO05D005384 1.1e-95 354.0 390 51.3
DCAR_028021 Daucus carota HOM05D004704 ORTHO05D005384 6.9e-95 351.3 390 50.0
Eucgr.D00532 Eucalyptus grandis HOM05D004704 ORTHO05D005384 6.9e-95 351.3 390 50.0
Gohir.D06G134300 Gossypium hirsutum HOM05D004704 ORTHO05D005384 2.0e-94 349.7 390 50.3
PGR004G2271 Punica granatum HOM05D004704 ORTHO05D005384 2.0e-94 349.7 390 49.7
Cc02_g14600 Coffea canephora HOM05D004704 ORTHO05D005384 2.6e-94 349.4 390 50.0
Sabra04G0035600 Salix brachista HOM05D004704 ORTHO05D005384 4.5e-94 348.6 390 51.0
TWI38G0698 Tripterygium wilfordii HOM05D004704 ORTHO05D005384 9.9e-94 347.4 369 51.5
BraA03t14222Z Brassica rapa HOM05D004704 ORTHO05D005384 2.2e-93 346.3 372 52.2
Glyma.13G231200 Glycine max HOM05D004704 ORTHO05D005384 2.9e-93 345.9 390 49.2
Eucgr.D00531 Eucalyptus grandis HOM05D004704 ORTHO05D005384 3.8e-93 345.5 390 48.7
SalBow8G1161 Salvia bowleyana HOM05D004704 ORTHO05D005384 3.8e-93 345.5 390 49.5
Gorai.010G156000 Gossypium raimondii HOM05D004704 ORTHO05D005384 6.4e-93 344.7 390 49.7
Sabra11G0046100 Salix brachista HOM05D004704 ORTHO05D005384 6.4e-93 344.7 369 52.0
Oeu062343.1 Olea europaea HOM05D004704 ORTHO05D005384 8.4e-93 344.4 308 59.4
Potri.011G064300 Populus trichocarpa HOM05D004704 ORTHO05D005384 1.9e-92 343.2 369 52.6
Dinv04632 Davidia involucrata HOM05D004704 ORTHO05D005384 4.2e-92 342.0 370 51.4
COL.COLO4_31331 Corchorus olitorius HOM05D004704 ORTHO05D005384 5.4e-92 341.7 390 50.5
Nitab4.5_0001375g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 7.1e-92 341.3 368 52.4
ECA236G1293 Erigeron canadensis HOM05D004704 ORTHO05D005384 1.6e-91 340.1 369 51.5
DCAR_004019 Daucus carota HOM05D004704 ORTHO05D005384 3.5e-91 339.0 369 50.4
A03p51400 Brassica napus HOM05D004704 ORTHO05D005384 4.6e-91 338.6 391 49.4
Rhsim13G0106100 Rhododendron simsii HOM05D004704 ORTHO05D005384 4.6e-91 338.6 369 50.9
Sp7g15490 Schrenkiella parvula HOM05D004704 ORTHO05D005384 4.6e-91 338.6 391 49.6
CiPaw.09G067900 Carya illinoinensis HOM05D004704 ORTHO05D005384 6.0e-91 338.2 369 51.5
A01p10560 Brassica napus HOM05D004704 ORTHO05D005384 1.0e-90 337.4 391 49.9
BcaC06g30574 Brassica carinata HOM05D004704 ORTHO05D005384 1.3e-90 337.0 391 49.4
Thhalv10023013m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 2.3e-90 336.3 391 48.8
CARHR225390 Cardamine hirsuta HOM05D004704 ORTHO05D005384 3.0e-90 335.9 391 49.4
BcaNung02719 Brassica carinata HOM05D004704 ORTHO05D005384 6.7e-90 334.7 391 48.8
C07p49820 Brassica napus HOM05D004704 ORTHO05D005384 6.7e-90 334.7 391 48.8
BolC7t45484H Brassica oleracea HOM05D004704 ORTHO05D005384 6.7e-90 334.7 391 48.8
Thhalv10024794m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 6.7e-90 334.7 370 50.5
C01p12500 Brassica napus HOM05D004704 ORTHO05D005384 1.1e-89 334.0 391 49.1
CiPaw.09G067800 Carya illinoinensis HOM05D004704 ORTHO05D005384 1.1e-89 334.0 390 49.2
DCAR_004020 Daucus carota HOM05D004704 ORTHO05D005384 1.1e-89 334.0 369 50.4
QL05p046090 Quercus lobata HOM05D004704 ORTHO05D005384 1.1e-89 334.0 369 50.4
Aa31LG6G1280 Aethionema arabicum HOM05D004704 ORTHO05D005384 1.5e-89 333.6 391 48.6
Aqoxy1G03204 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 1.5e-89 333.6 369 49.3
Nn1g04361 Nelumbo nucifera HOM05D004704 ORTHO05D005384 1.5e-89 333.6 390 48.2
Lsat_1_v5_gn_7_23201 Lactuca sativa HOM05D004704 ORTHO05D005384 2.5e-89 332.8 369 49.6
BcaNung03813 Brassica carinata HOM05D004704 ORTHO05D005384 3.3e-89 332.4 391 48.3
QL05p045074 Quercus lobata HOM05D004704 ORTHO05D005384 4.3e-89 332.0 368 50.3
Cfa000584 Carpinus fangiana HOM05D004704 ORTHO05D005384 5.6e-89 331.6 390 49.0
BcaC09g51493 Brassica carinata HOM05D004704 ORTHO05D005384 7.4e-89 331.3 391 48.6
BolC1t01223H Brassica oleracea HOM05D004704 ORTHO05D005384 7.4e-89 331.3 391 48.6
Carub.0007s2269 Capsella rubella HOM05D004704 ORTHO05D005384 7.4e-89 331.3 391 48.6
Oeu041801.1 Olea europaea HOM05D004704 ORTHO05D005384 9.6e-89 330.9 334 53.9
Oeu041796.1 Olea europaea HOM05D004704 ORTHO05D005384 1.3e-88 330.5 334 53.3
AL7G35740 Arabidopsis lyrata HOM05D004704 ORTHO05D005384 1.6e-88 330.1 391 49.1
BraA08t33364Z Brassica rapa HOM05D004704 ORTHO05D005384 2.8e-88 329.3 370 50.5
TAR627G0020 Trochodendron aralioides HOM05D004704 ORTHO05D005384 2.8e-88 329.3 369 49.1
TAR706G0003 Trochodendron aralioides HOM05D004704 ORTHO05D005384 2.8e-88 329.3 369 49.1
BcaC09g51492 Brassica carinata HOM05D004704 ORTHO05D005384 3.7e-88 328.9 403 47.4
MBI06_g45390_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 4.8e-88 328.6 390 47.7
BraA01t01002Z Brassica rapa HOM05D004704 ORTHO05D005384 6.2e-88 328.2 391 48.8
Migut.M01052 Erythranthe guttata HOM05D004704 ORTHO05D005384 6.2e-88 328.2 369 48.5
HanXRQChr04g0115831 Helianthus annuus HOM05D004704 ORTHO05D005384 8.1e-88 327.8 369 50.1
TAR629G2609 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.8e-87 326.6 369 47.7
BcaB04g18480 Brassica carinata HOM05D004704 ORTHO05D005384 2.4e-87 326.2 391 48.1
A08p13850 Brassica napus HOM05D004704 ORTHO05D005384 2.4e-87 326.2 370 50.3
MBI06_g18005_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 2.4e-87 326.2 390 47.4
Sed0013784 Sechium edule HOM05D004704 ORTHO05D005384 2.4e-87 326.2 369 48.5
MBI06_g18007_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 3.1e-87 325.9 391 47.1
unitig_578.g16444 Utricularia gibba HOM05D004704 ORTHO05D005384 3.1e-87 325.9 369 47.4
Aqoxy4G00468 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 4.0e-87 325.5 369 48.8
Rhsim13G0106000 Rhododendron simsii HOM05D004704 ORTHO05D005384 4.0e-87 325.5 369 49.3
TAR629G2327 Trochodendron aralioides HOM05D004704 ORTHO05D005384 4.0e-87 325.5 369 47.4
Lj3g0017096 Lotus japonicus HOM05D004704 ORTHO05D005384 5.3e-87 325.1 369 48.2
CsaV3_6G050770 Cucumis sativus L. HOM05D004704 ORTHO05D005384 1.2e-86 323.9 369 49.9
BcaC01g00546 Brassica carinata HOM05D004704 ORTHO05D005384 1.5e-86 323.6 370 50.3
BolC3t20394H Brassica oleracea HOM05D004704 ORTHO05D005384 1.5e-86 323.6 370 50.3
arahy.Tifrunner.gnm1.ann1.IMTX5S Arachis hypogaea HOM05D004704 ORTHO05D005384 1.7e-85 320.1 369 48.5
Aqoxy4G00469 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 2.9e-85 319.3 369 47.4
MELO3C007223.2 Cucumis melo HOM05D004704 ORTHO05D005384 4.9e-85 318.5 369 48.8
BcaNung03810 Brassica carinata HOM05D004704 ORTHO05D005384 6.4e-85 318.2 391 47.8
SGA_v2.0_scaffold1G00021 Striga asiatica HOM05D004704 ORTHO05D005384 6.4e-85 318.2 370 48.6
Medtr2g091155 Medicago truncatula HOM05D004704 ORTHO05D005384 1.1e-84 317.4 371 46.9
PSO063G2883 Papaver somniferum HOM05D004704 ORTHO05D005384 1.1e-84 317.4 369 48.2
SGA_v2.0_scaffold1G00019 Striga asiatica HOM05D004704 ORTHO05D005384 1.1e-84 317.4 392 47.7
ClCG01G023620 Citrullus lanatus HOM05D004704 ORTHO05D005384 1.9e-84 316.6 369 48.8
Manes.17G053800 Manihot esculenta HOM05D004704 ORTHO05D005384 3.2e-84 315.8 370 47.0
arahy.Tifrunner.gnm1.ann1.7UF87C Arachis hypogaea HOM05D004704 ORTHO05D005384 4.2e-84 315.5 369 48.0
Lalb_Chr24g0400061 Lupinus albus HOM05D004704 ORTHO05D005384 4.2e-84 315.5 370 46.8
Phvul.005G096400 Phaseolus vulgaris HOM05D004704 ORTHO05D005384 7.1e-84 314.7 369 46.3
Glyma.12G209400 Glycine max HOM05D004704 ORTHO05D005384 2.1e-83 313.2 369 46.9
Glyma.13G291900 Glycine max HOM05D004704 ORTHO05D005384 2.1e-83 313.2 369 46.9
Medtr2g091165 Medicago truncatula HOM05D004704 ORTHO05D005384 2.7e-83 312.8 370 47.0
VMungo1080G1587 Vigna mungo HOM05D004704 ORTHO05D005384 3.5e-83 312.4 369 46.1
DCAR_013058 Daucus carota HOM05D004704 ORTHO05D005384 3.9e-82 308.9 390 45.4
ATR0602G038 Amborella trichopoda HOM05D004704 ORTHO05D005384 1.9e-81 306.6 376 46.0
Psat5g275720 Pisum sativum HOM05D004704 ORTHO05D005384 5.6e-81 305.1 369 45.3
Lalb_Chr14g0367381 Lupinus albus HOM05D004704 ORTHO05D005384 1.1e-79 300.8 370 45.4
SGA_v2.0_scaffold1G00026 Striga asiatica HOM05D004704 ORTHO05D005384 1.8e-79 300.1 364 47.5
Oeu041804.1 Olea europaea HOM05D004704 ORTHO05D005384 9.0e-79 297.7 339 49.9
TPR.G11553 Trifolium pratense HOM05D004704 ORTHO05D005384 2.6e-78 296.2 360 46.4
Duzib192G0914 Durio zibethinus HOM05D004704 ORTHO05D005384 8.4e-77 291.2 390 44.9
Lj1P1195T10 Lonicera japonica HOM05D004704 ORTHO05D005384 8.4e-77 291.2 369 47.2
Ca_01465_v3 Cicer arietinum L. HOM05D004704 ORTHO05D005384 5.5e-76 288.5 337 48.1
Zm00001eb161990 Zea mays HOM05D004704 ORTHO05D005384 2.1e-75 286.6 392 42.6
QL04p061454 Quercus lobata HOM05D004704 ORTHO05D005384 3.0e-74 282.7 356 46.9
Os01g0613100 Oryza sativa ssp. japonica HOM05D004704 ORTHO05D005384 1.9e-73 280.0 399 41.9
C03p81280 Brassica napus HOM05D004704 ORTHO05D005384 5.7e-73 278.5 244 59.8
Lalb_Chr20g0121271 Lupinus albus HOM05D004704 ORTHO05D005384 1.3e-72 277.3 370 42.4
PSO063G6793 Papaver somniferum HOM05D004704 ORTHO05D005384 6.9e-71 271.6 353 44.8
Oeu012062.1 Olea europaea HOM05D004704 ORTHO05D005384 2.2e-69 266.5 331 48.3
GSVIVG01021187001 Vitis vinifera HOM05D004704 ORTHO05D005384 4.6e-67 258.8 322 46.3
SalBow8G4518 Salvia bowleyana HOM05D004704 ORTHO05D005384 9.7e-65 251.1 309 47.2
PSO782G0987 Papaver somniferum HOM05D004704 ORTHO05D005384 9.1e-63 244.6 369 41.5
Rhsim13G0186500 Rhododendron simsii HOM05D004704 ORTHO05D005384 9.1e-63 244.6 324 45.4
CDE02G3156 Ceratophyllum demersum HOM05D004704 ORTHO05D005384 2.0e-62 243.4 244 50.8
AT4G18540 Arabidopsis thaliana HOM05D004704 ORTHO05D005384 8.8e-58 228.0 265 49.1
CSS0042208 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 2.0e-57 226.9 345 43.2
Pp3c12_12860 Physcomitrium patens HOM05D004704 ORTHO05D005384 1.3e-53 214.2 368 33.4
TAR627G1005 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.3e-53 214.2 298 42.3
Rhsim13G0105800 Rhododendron simsii HOM05D004704 ORTHO05D005384 2.1e-51 206.8 289 43.3
Pp3c12_12910 Physcomitrium patens HOM05D004704 ORTHO05D005384 5.9e-46 188.7 243 39.9
Duzib235G1356 Durio zibethinus HOM05D004704 ORTHO05D005384 1.6e-43 180.6 151 62.3
Sabra11G0045900 Salix brachista HOM05D004704 ORTHO05D005384 1.3e-40 171.0 186 49.5
PSO782G0854 Papaver somniferum HOM05D004704 ORTHO05D005384 2.2e-40 170.2 149 57.0
TAR627G0576 Trochodendron aralioides HOM05D004704 ORTHO05D005384 9.1e-39 164.9 131 60.3
GSVIVG01021186001 Vitis vinifera HOM05D004704 ORTHO05D000303 1.2e-35 154.5 165 49.7
SGA_v2.0_scaffold1G00016 Striga asiatica HOM05D004704 ORTHO05D005384 5.7e-25 119.0 129 51.2
Aqoxy1G03203 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 5.4e-23 112.5 61 78.7
TAR627G1161 Trochodendron aralioides HOM05D004704 ORTHO05D005384 6.6e-21 105.5 155 41.3
Nitab4.5_0008860g0010 Nicotiana tabacum HOM05D004704 ORTHO05D005384 4.4e-17 92.8 98 53.1
SEGI_01061 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 6.4e-16 89.0 66 65.2
SalBow2G1262 Salvia bowleyana HOM05D004704 ORTHO05D005384 1.0e-13 81.6 52 69.2
Lj1C1195T2 Lonicera japonica HOM05D004704 ORTHO05D005384 1.3e-13 81.3 76 51.3
arahy.Tifrunner.gnm1.ann1.ESA3XA Arachis hypogaea HOM05D004704 ORTHO05D005384 2.3e-13 80.5 52 69.2
arahy.Tifrunner.gnm1.ann1.EBKJ9L Arachis hypogaea HOM05D004704 ORTHO05D005384 1.1e-12 78.2 46 73.9
arahy.Tifrunner.gnm1.ann1.UG6603 Arachis hypogaea HOM05D004704 ORTHO05D005384 5.6e-12 75.9 46 71.7
COL.COLO4_31332 Corchorus olitorius HOM05D004704 ORTHO05D005384 8.0e-11 72.0 49 67.3
SMO351G0588 Selaginella moellendorffii HOM05D020388 ORTHO05D005384 8.9e-10 68.6 205 27.3
Rhsim06G0194600 Rhododendron simsii HOM05D000067 ORTHO05D005384 2.9e-08 63.5 49 57.1
SEGI_32787 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 2.1e-06 57.4 55 52.7
Rhsim06G0194700 Rhododendron simsii HOM05D000067 ORTHO05D000097 4.6e-06 56.2 49 53.1


User provided reference genes

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