Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g032180.3 Solanum lycopersicum HOM05D000297 ORTHO05D000004 1.1e-164 583.2 288 100.0
Sopen05g001410 Solanum pennellii HOM05D000297 ORTHO05D012389 2.0e-81 306.6 228 71.1
Sopen05g001390 Solanum pennellii HOM05D000297 ORTHO05D012389 2.7e-78 296.2 228 68.9
Solyc05g005360.3 Solanum lycopersicum HOM05D000297 ORTHO05D012389 3.9e-77 292.4 228 68.4
Sopen05g001380 Solanum pennellii HOM05D000297 ORTHO05D012389 8.7e-77 291.2 228 68.4
Sopen05g001360 Solanum pennellii HOM05D000297 ORTHO05D012389 2.5e-76 289.7 228 68.0
Solyc05g005350.3 Solanum lycopersicum HOM05D000297 ORTHO05D012389 1.6e-70 270.4 221 65.6
PGSC0003DMG402013505 Solanum tuberosum HOM05D000297 ORTHO05D012389 5.7e-68 261.9 228 63.2
Sopen05g001420 Solanum pennellii HOM05D000297 ORTHO05D012389 2.6e-60 236.5 195 65.1
PGSC0003DMG401013505 Solanum tuberosum HOM05D000297 ORTHO05D012389 8.2e-51 204.9 193 60.1
Solyc05g005370.3 Solanum lycopersicum HOM05D000297 ORTHO05D000193 6.3e-43 178.7 128 69.5
Sopen05g001430 Solanum pennellii HOM05D000297 ORTHO05D012389 4.1e-42 176.0 219 49.3
PGSC0003DMG400013503 Solanum tuberosum HOM05D000297 ORTHO05D012389 3.5e-41 172.9 162 57.4
Solyc05g005380.3 Solanum lycopersicum HOM05D000297 ORTHO05D012389 3.2e-39 166.4 213 47.9
PGSC0003DMG400013504 Solanum tuberosum HOM05D000297 ORTHO05D012389 2.1e-38 163.7 194 51.5
Sopen02g010510 Solanum pennellii HOM05D000004 ORTHO05D000002 1.8e-37 160.6 87 89.7
Sopen05g001440 Solanum pennellii HOM05D000297 ORTHO05D012389 2.4e-34 150.2 240 43.3
Solyc05g005390.3 Solanum lycopersicum HOM05D000297 ORTHO05D000193 1.1e-31 141.4 240 41.7
Solyc10g009440.4 Solanum lycopersicum HOM05D000297 ORTHO05D000193 1.2e-30 137.9 236 41.5
PGSC0003DMG400013502 Solanum tuberosum HOM05D000297 ORTHO05D000193 7.5e-28 128.6 186 44.6
Sopen05g001460 Solanum pennellii HOM05D000297 ORTHO05D012389 2.5e-23 113.6 237 40.5
Solyc05g005440.3 Solanum lycopersicum HOM05D000297 ORTHO05D012389 7.3e-23 112.1 236 38.6
CAN.G1156.20 Capsicum annuum HOM05D000297 ORTHO05D000193 1.6e-22 110.9 235 40.0
Nitab4.5_0001296g0100 Nicotiana tabacum HOM05D000297 ORTHO05D000193 4.7e-22 109.4 211 40.8
Sopen10g005220 Solanum pennellii HOM05D000297 ORTHO05D012389 3.1e-21 106.7 207 38.6
Sopen05g001350 Solanum pennellii HOM05D000297 ORTHO05D012389 5.8e-20 102.4 87 66.7
Sopen11g007490 Solanum pennellii HOM05D000297 ORTHO05D000193 7.5e-20 102.1 203 37.4
Peaxi162Scf00827g00055 Petunia axillaris HOM05D000297 ORTHO05D000193 8.3e-19 98.6 215 37.7
PGSC0003DMG400034306 Solanum tuberosum HOM05D000297 ORTHO05D012389 2.4e-18 97.1 185 40.0
PGSC0003DMG400013472 Solanum tuberosum HOM05D000297 ORTHO05D012389 3.2e-18 96.7 87 62.1
Sopen05g011010 Solanum pennellii HOM05D000297 ORTHO05D012389 2.7e-17 93.6 169 39.6
Solyc05g015550.2 Solanum lycopersicum HOM05D000297 ORTHO05D012389 1.3e-16 91.3 189 37.6
CAN.G1263.32 Capsicum annuum HOM05D000297 ORTHO05D000193 1.7e-16 90.9 169 37.3
Solyc04g015060.3 Solanum lycopersicum HOM05D000297 ORTHO05D000193 2.5e-15 87.0 240 32.5
Sopen04g007080 Solanum pennellii HOM05D000297 ORTHO05D000193 2.5e-15 87.0 240 32.5
vmacro03609 Vaccinium macrocarpon HOM05D000297 ORTHO05D000193 1.2e-14 84.7 227 32.2
vmacro23226 Vaccinium macrocarpon HOM05D000297 ORTHO05D000193 1.2e-14 84.7 227 32.2
Nitab4.5_0000147g0320 Nicotiana tabacum HOM05D000297 ORTHO05D000193 8.1e-14 82.0 215 34.0
PGSC0003DMG400013526 Solanum tuberosum HOM05D000297 ORTHO05D000193 3.1e-13 80.1 61 62.3
Actinidia39255 Actinidia chinensis HOM05D000297 ORTHO05D000193 4.4e-12 76.3 212 29.2
Lsat_1_v5_gn_4_63880 Lactuca sativa HOM05D000297 ORTHO05D000193 1.3e-11 74.7 217 31.8
SalBow7G3502 Salvia bowleyana HOM05D000297 ORTHO05D000193 1.7e-11 74.3 210 34.3
SalBow7G2386 Salvia bowleyana HOM05D000297 ORTHO05D000193 2.2e-11 73.9 213 34.3
Duzib235G0506 Durio zibethinus HOM05D000297 ORTHO05D000193 3.7e-11 73.2 211 28.9
PGSC0003DMG400013528 Solanum tuberosum HOM05D000003 ORTHO05D000004 3.7e-11 73.2 58 56.9
GSVIVG01002895001 Vitis vinifera HOM05D000297 ORTHO05D000193 4.9e-11 72.8 209 28.2
Duzib192G1035 Durio zibethinus HOM05D000297 ORTHO05D000193 8.3e-11 72.0 206 32.5
VMungo1215G1927 Vigna mungo HOM05D000297 ORTHO05D000193 8.3e-11 72.0 134 32.1
SGA_v2.0_scaffold7G03696 Striga asiatica HOM05D000297 ORTHO05D000193 2.4e-10 70.5 140 33.6
Gohir.D05G179300 Gossypium hirsutum HOM05D000297 ORTHO05D000193 4.1e-10 69.7 131 33.6
Gorai.009G184800 Gossypium raimondii HOM05D000297 ORTHO05D000193 4.1e-10 69.7 131 33.6
HanXRQChr16g0515761 Helianthus annuus HOM05D000297 ORTHO05D000193 4.1e-10 69.7 130 36.2
SalBow8G2500 Salvia bowleyana HOM05D000297 ORTHO05D000193 4.1e-10 69.7 178 34.3
vmacro15730 Vaccinium macrocarpon HOM05D000297 ORTHO05D000193 4.1e-10 69.7 212 29.7
Gohir.A05G176400 Gossypium hirsutum HOM05D000297 ORTHO05D000193 5.4e-10 69.3 131 33.6
QL05p067791 Quercus lobata HOM05D000297 ORTHO05D000193 5.4e-10 69.3 213 29.1
Solyc02g032185.1 Solanum lycopersicum HOM05D000297 ORTHO05D000193 5.4e-10 69.3 157 31.2
Sopen02g039290 Solanum pennellii HOM05D000003 ORTHO05D000004 5.4e-10 69.3 58 55.2
PGSC0003DMG400021783 Solanum tuberosum HOM05D000003 ORTHO05D000004 5.4e-10 69.3 58 56.9
Thecc.06G241100 Theobroma cacao HOM05D000297 ORTHO05D000193 5.4e-10 69.3 226 27.0
ECA236G2756 Erigeron canadensis HOM05D000297 ORTHO05D000193 7.1e-10 68.9 224 32.6
MSTRG.16052 Avicennia marina HOM05D000297 ORTHO05D000193 9.2e-10 68.6 136 33.8
PGSC0003DMG402014048 Solanum tuberosum HOM05D000003 ORTHO05D000004 1.2e-09 68.2 58 51.7
Lalb_Chr13g0304371 Lupinus albus HOM05D000297 ORTHO05D000193 1.6e-09 67.8 138 31.9
FAN21G0413 Fragaria x ananassa HOM05D000297 ORTHO05D000193 7.8e-09 65.5 142 31.7
Phvul.003G087000 Phaseolus vulgaris HOM05D000297 ORTHO05D000193 7.8e-09 65.5 140 31.4
Rhsim13G0140800 Rhododendron simsii HOM05D000297 ORTHO05D000193 7.8e-09 65.5 172 28.5
Glyma.07G268100 Glycine max HOM05D000297 ORTHO05D000193 1.0e-08 65.1 140 32.1
Psat0s2409g0040 Pisum sativum HOM05D000297 ORTHO05D000193 1.0e-08 65.1 140 32.1
CSS0026715 Camellia sinensis var. sinensis HOM05D000297 ORTHO05D000193 1.3e-08 64.7 168 31.0
CSS0035793 Camellia sinensis var. sinensis HOM05D000297 ORTHO05D000193 1.3e-08 64.7 168 31.0
Glyma.17G005600 Glycine max HOM05D000297 ORTHO05D000193 1.3e-08 64.7 133 31.6
Medtr4g133952 Medicago truncatula HOM05D000297 ORTHO05D000193 1.3e-08 64.7 139 30.9
MSTRG.7131 Avicennia marina HOM05D000297 ORTHO05D000193 1.7e-08 64.3 164 30.5
arahy.Tifrunner.gnm1.ann1.CHFV0I Arachis hypogaea HOM05D000297 ORTHO05D000193 2.3e-08 63.9 136 33.1
CsaV3_3G004280 Cucumis sativus L. HOM05D000297 ORTHO05D000193 2.3e-08 63.9 87 40.2
CsaV3_3G004260 Cucumis sativus L. HOM05D000297 ORTHO05D000193 3.0e-08 63.5 87 39.1
Manes.08G068800 Manihot esculenta HOM05D000297 ORTHO05D000193 3.0e-08 63.5 215 27.9
CsaV3_3G004250 Cucumis sativus L. HOM05D000297 ORTHO05D000193 5.1e-08 62.8 134 32.8
FvH4_3g00320 Fragaria vesca HOM05D000297 ORTHO05D000193 5.1e-08 62.8 137 32.1
Aqoxy1G04258 Aquilegia oxysepala HOM05D000297 ORTHO05D000193 6.6e-08 62.4 99 38.4
A09p23170 Brassica napus HOM05D000297 ORTHO05D000193 6.6e-08 62.4 137 34.3
Cfa000037 Carpinus fangiana HOM05D000297 ORTHO05D000193 6.6e-08 62.4 184 29.3
COL.COLO4_31940 Corchorus olitorius HOM05D000297 ORTHO05D000193 6.6e-08 62.4 141 31.2
Solyc02g032190.1 Solanum lycopersicum HOM05D000297 ORTHO05D000193 6.6e-08 62.4 95 43.2
CARHR173640 Cardamine hirsuta HOM05D000297 ORTHO05D000193 8.6e-08 62.0 137 33.6
ECA232G4557 Erigeron canadensis HOM05D000297 ORTHO05D000193 8.6e-08 62.0 183 31.7
Potri.016G005600 Populus trichocarpa HOM05D000297 ORTHO05D000193 8.6e-08 62.0 130 31.5
BcaC04g21608 Brassica carinata HOM05D000297 ORTHO05D000193 1.1e-07 61.6 135 33.3
C09p29910 Brassica napus HOM05D000297 ORTHO05D000193 1.1e-07 61.6 135 33.3
Haze_07018 Corylus avellana HOM05D003084 ORTHO05D003580 1.1e-07 61.6 167 28.7
CsaV3_3G004270 Cucumis sativus L. HOM05D000297 ORTHO05D000193 1.1e-07 61.6 85 40.0
Lalb_Chr12g0195941 Lupinus albus HOM05D000297 ORTHO05D000193 1.1e-07 61.6 131 32.1
MELO3C014120.2 Cucumis melo HOM05D000297 ORTHO05D000193 1.5e-07 61.2 87 37.9
Lj2P256T82 Lonicera japonica HOM05D000297 ORTHO05D000193 1.5e-07 61.2 157 33.1
Lj4g0009958 Lotus japonicus HOM05D000297 ORTHO05D000193 2.5e-07 60.5 139 30.2
ECA236G1403 Erigeron canadensis HOM05D000297 ORTHO05D000193 3.3e-07 60.1 160 29.4
Hma1.2p1_1175F.1_g264020 Hydrangea macrophylla HOM05D000297 ORTHO05D000193 3.3e-07 60.1 133 30.1
arahy.Tifrunner.gnm1.ann1.TAFY85 Arachis hypogaea HOM05D000297 ORTHO05D000193 4.3e-07 59.7 134 31.3
Thhalv10001185m.g Eutrema salsugineum HOM05D000297 ORTHO05D000193 4.3e-07 59.7 137 33.6
Potri.006G005000 Populus trichocarpa HOM05D000297 ORTHO05D000193 4.3e-07 59.7 133 30.1
Eucgr.E03857 Eucalyptus grandis HOM05D000297 ORTHO05D000193 5.6e-07 59.3 181 30.4
MD02G1192100 Malus domestica HOM05D000297 ORTHO05D000193 5.6e-07 59.3 58 48.3
SGA_v2.0_scaffold186G40125 Striga asiatica HOM05D000297 ORTHO05D000193 5.6e-07 59.3 136 30.1
BraA09t37920Z Brassica rapa HOM05D000297 ORTHO05D000193 7.3e-07 58.9 142 32.4
Migut.M01443 Erythranthe guttata HOM05D000297 ORTHO05D000193 7.3e-07 58.9 94 35.1
PSO675G2173 Papaver somniferum HOM05D000297 ORTHO05D000193 7.3e-07 58.9 103 35.9
PSO732G0479 Papaver somniferum HOM05D000297 ORTHO05D000193 7.3e-07 58.9 103 35.9
Prupe.4G243500 Prunus persica HOM05D000297 ORTHO05D000193 7.3e-07 58.9 80 41.2
BcaC05g26125 Brassica carinata HOM05D000297 ORTHO05D000193 9.5e-07 58.5 50 58.0
A09p42780 Brassica napus HOM05D000297 ORTHO05D000193 9.5e-07 58.5 50 58.0
C05p21000 Brassica napus HOM05D000297 ORTHO05D000193 9.5e-07 58.5 50 58.0
BolC5t30799H Brassica oleracea HOM05D000297 ORTHO05D000193 9.5e-07 58.5 50 58.0
BraA09t39752Z Brassica rapa HOM05D000297 ORTHO05D000193 9.5e-07 58.5 50 58.0
Ciclev10016498m.g Citrus clementina HOM05D000297 ORTHO05D000193 9.5e-07 58.5 165 28.5
RcHm_v2.0_Chr5g0000501 Rosa chinensis HOM05D000297 ORTHO05D000193 9.5e-07 58.5 91 36.3
unitig_26.g10041 Utricularia gibba HOM05D000297 ORTHO05D000193 9.5e-07 58.5 107 35.5
Cpa.g.sc12.138 Carica papaya HOM05D000297 ORTHO05D000193 1.2e-06 58.2 52 53.8
CiPaw.11G204200 Carya illinoinensis HOM05D000297 ORTHO05D000193 1.2e-06 58.2 51 54.9
Gohir.A08G025100 Gossypium hirsutum HOM05D000297 ORTHO05D000193 1.2e-06 58.2 69 43.5
Gohir.D08G035600 Gossypium hirsutum HOM05D000297 ORTHO05D000193 1.2e-06 58.2 69 43.5
Gorai.004G033600 Gossypium raimondii HOM05D000297 ORTHO05D000193 1.2e-06 58.2 69 43.5
TPR.G5937 Trifolium pratense HOM05D000297 ORTHO05D000193 1.2e-06 58.2 144 29.2
BcaB07g32195 Brassica carinata HOM05D000297 ORTHO05D000193 1.6e-06 57.8 58 51.7
BolC9t55854H Brassica oleracea HOM05D000297 ORTHO05D000193 1.6e-06 57.8 141 31.9
Ciclev10010391m.g Citrus clementina HOM05D000297 ORTHO05D000193 1.6e-06 57.8 71 42.3
AT5G47670 Arabidopsis thaliana HOM05D000297 ORTHO05D000193 2.1e-06 57.4 140 32.1
CiPaw.10G081800 Carya illinoinensis HOM05D000297 ORTHO05D000193 2.1e-06 57.4 137 29.9
AUR62021813 Chenopodium quinoa HOM05D000297 ORTHO05D000193 2.1e-06 57.4 136 29.4
MD02G1191900 Malus domestica HOM05D000297 ORTHO05D000193 2.1e-06 57.4 92 39.1
MD10G1339000 Malus domestica HOM05D000297 ORTHO05D000193 2.1e-06 57.4 91 35.2
Os06g0285200 Oryza sativa ssp. japonica HOM05D000297 ORTHO05D000193 2.1e-06 57.4 91 36.3
Prupe.4G003800 Prunus persica HOM05D000297 ORTHO05D000193 2.1e-06 57.4 122 30.3
Sopen03g020890 Solanum pennellii HOM05D000003 ORTHO05D000006 2.1e-06 57.4 71 43.7
TPR.G35526 Trifolium pratense HOM05D000297 ORTHO05D000193 2.1e-06 57.4 51 54.9
Zm00001eb380770 Zea mays HOM05D000297 ORTHO05D000193 2.1e-06 57.4 89 36.0
CSS0044128 Camellia sinensis var. sinensis HOM05D000297 ORTHO05D000193 2.8e-06 57.0 158 29.7
Carub.0008s0011 Capsella rubella HOM05D000297 ORTHO05D000193 2.8e-06 57.0 137 30.7
AUR62012833 Chenopodium quinoa HOM05D000297 ORTHO05D000193 2.8e-06 57.0 96 34.4
AUR62012847 Chenopodium quinoa HOM05D000297 ORTHO05D000193 2.8e-06 57.0 96 34.4
LjContig00312_ERROPOS870357g0014070 Lotus japonicus HOM05D000297 ORTHO05D000193 2.8e-06 57.0 89 37.1
QL08p004092 Quercus lobata HOM05D000297 ORTHO05D000193 2.8e-06 57.0 59 50.8
RcHm_v2.0_Chr5g0053481 Rosa chinensis HOM05D000297 ORTHO05D000193 2.8e-06 57.0 52 51.9
Sp1g19490 Schrenkiella parvula HOM05D000297 ORTHO05D000193 2.8e-06 57.0 52 53.8
SEGI_24194 Sequoiadendron giganteum HOM05D000297 ORTHO05D000193 2.8e-06 57.0 69 40.6
Atru.chr1.2259 Acer truncatum HOM05D000297 ORTHO05D000193 3.6e-06 56.6 91 35.2
EL10Ac8g20264 Beta vulgaris HOM05D000297 ORTHO05D000193 3.6e-06 56.6 91 35.2
BcaB03g14245 Brassica carinata HOM05D000297 ORTHO05D000193 3.6e-06 56.6 50 56.0
BcaC06g34919 Brassica carinata HOM05D000297 ORTHO05D000193 3.6e-06 56.6 50 56.0
A06p44870 Brassica napus HOM05D000297 ORTHO05D000193 3.6e-06 56.6 137 31.4
A07p14850 Brassica napus HOM05D000297 ORTHO05D000193 3.6e-06 56.6 50 56.0
C07p21800 Brassica napus HOM05D000297 ORTHO05D000193 3.6e-06 56.6 50 56.0
BolC7t42711H Brassica oleracea HOM05D000297 ORTHO05D000193 3.6e-06 56.6 50 56.0
CARHR022320 Cardamine hirsuta HOM05D000297 ORTHO05D000193 3.6e-06 56.6 87 37.9
AUR62021825 Chenopodium quinoa HOM05D000297 ORTHO05D000193 3.6e-06 56.6 91 35.2
Ca_20992_v3 Cicer arietinum L. HOM05D000297 ORTHO05D000193 3.6e-06 56.6 91 35.2
ClCG10G004460 Citrullus lanatus HOM05D000297 ORTHO05D000193 3.6e-06 56.6 59 45.8
FAN25G0024 Fragaria x ananassa HOM05D000297 ORTHO05D000193 3.6e-06 56.6 91 35.2
PGR083G0856 Punica granatum HOM05D000297 ORTHO05D000193 3.6e-06 56.6 51 54.9
Sc17g0007980 Simmondsia chinensis HOM05D000297 ORTHO05D000193 3.6e-06 56.6 91 35.2
TWI63G1331 Tripterygium wilfordii HOM05D000297 ORTHO05D000193 3.6e-06 56.6 91 35.2
BcaC06g34233 Brassica carinata HOM05D000297 ORTHO05D000193 4.7e-06 56.2 137 31.4
C07p31330 Brassica napus HOM05D000297 ORTHO05D000193 4.7e-06 56.2 137 31.4
BolC7t43674H Brassica oleracea HOM05D000297 ORTHO05D000193 4.7e-06 56.2 137 31.4
Dinv10334 Davidia involucrata HOM05D000297 ORTHO05D000193 4.7e-06 56.2 90 38.9
MD05G1361600 Malus domestica HOM05D000297 ORTHO05D000193 4.7e-06 56.2 91 34.1
Nn1g07518 Nelumbo nucifera HOM05D000297 ORTHO05D000193 4.7e-06 56.2 164 29.3
Psat2g089560 Pisum sativum HOM05D000003 ORTHO05D000004 4.7e-06 56.2 195 23.6
Sabra06G0004200 Salix brachista HOM05D000297 ORTHO05D000193 4.7e-06 56.2 95 33.7
AT1G21970 Arabidopsis thaliana HOM05D000297 ORTHO05D000193 6.2e-06 55.8 58 50.0
CANSAT56G3140 Cannabis sativa HOM05D000297 ORTHO05D000193 6.2e-06 55.8 131 29.8
Migut.E01137 Erythranthe guttata HOM05D000297 ORTHO05D000193 6.2e-06 55.8 67 43.3
Sabra16G0010600 Salix brachista HOM05D000297 ORTHO05D000193 6.2e-06 55.8 100 33.0
Sopen07g021060 Solanum pennellii HOM05D000003 ORTHO05D000004 6.2e-06 55.8 51 49.0
TAR633G0099 Trochodendron aralioides HOM05D000297 ORTHO05D000193 6.2e-06 55.8 68 45.6
CDE10G0743 Ceratophyllum demersum HOM05D000297 ORTHO05D000193 8.1e-06 55.5 131 30.5
Migut.K01122 Erythranthe guttata HOM05D000297 ORTHO05D000193 8.1e-06 55.5 117 31.6
MBI14_g10141_MAGBIO Magnolia biondii HOM05D000297 ORTHO05D000193 8.1e-06 55.5 93 35.5
Sed0020464 Sechium edule HOM05D000297 ORTHO05D000193 8.1e-06 55.5 58 46.6


User provided reference genes

Program Settings