Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g032120.3 Solanum lycopersicum HOM05D004432 ORTHO05D005427 7.2e-185 650.6 365 100.0
Sopen02g010370 Solanum pennellii HOM05D004432 ORTHO05D005427 1.0e-183 646.7 365 99.5
Peaxi162Scf00048g01413 Petunia axillaris HOM05D004432 ORTHO05D005427 5.1e-138 495.0 374 76.2
PGSC0003DMG401017733 Solanum tuberosum HOM05D004432 ORTHO05D005427 1.5e-137 493.4 374 69.8
Peaxi162Scf00198g01525 Petunia axillaris HOM05D004432 ORTHO05D005427 4.7e-136 488.4 373 70.2
Solyc02g081620.3 Solanum lycopersicum HOM05D004432 ORTHO05D005427 1.8e-135 486.5 374 73.0
CAN.G809.71 Capsicum annuum HOM05D004432 ORTHO05D005427 3.2e-132 475.7 385 71.7
Thecc.02G004200 Theobroma cacao HOM05D004432 ORTHO05D005427 7.6e-126 454.5 372 66.1
Nitab4.5_0006794g0040 Nicotiana tabacum HOM05D004432 ORTHO05D005427 8.4e-125 451.1 350 70.0
Sopen02g026240 Solanum pennellii HOM05D004432 ORTHO05D005427 1.1e-124 450.7 352 71.3
Nitab4.5_0010401g0010 Nicotiana tabacum HOM05D004432 ORTHO05D005427 1.9e-124 449.9 350 70.0
Hma1.2p1_0088F.1_g045180 Hydrangea macrophylla HOM05D004432 ORTHO05D005427 1.6e-120 436.8 375 72.0
Dinv31191 Davidia involucrata HOM05D004432 ORTHO05D005427 2.1e-120 436.4 374 69.0
CSS0030674 Camellia sinensis var. sinensis HOM05D004432 ORTHO05D005427 2.8e-120 436.0 376 71.8
COL.COLO4_18029 Corchorus olitorius HOM05D004432 ORTHO05D003521 2.4e-119 433.0 364 64.8
Gohir.D12G047900 Gossypium hirsutum HOM05D004432 ORTHO05D005427 9.0e-119 431.0 369 66.4
Gohir.A12G049500 Gossypium hirsutum HOM05D004432 ORTHO05D005427 5.8e-118 428.3 369 66.4
MD05G1247000 Malus domestica HOM05D004432 ORTHO05D005427 1.9e-116 423.3 373 61.4
SalBow8G1652 Salvia bowleyana HOM05D004432 ORTHO05D005427 2.4e-116 422.9 376 64.6
Phvul.002G325100 Phaseolus vulgaris HOM05D004432 ORTHO05D005427 2.7e-115 419.5 375 64.3
Sabra03G0044900 Salix brachista HOM05D004432 ORTHO05D005427 2.7e-115 419.5 377 64.7
MD10G1227600 Malus domestica HOM05D004432 ORTHO05D005427 3.5e-115 419.1 373 60.9
Manes.03G075400 Manihot esculenta HOM05D004432 ORTHO05D005427 6.0e-115 418.3 371 67.1
Migut.M02008 Erythranthe guttata HOM05D004432 ORTHO05D005427 1.3e-114 417.2 379 68.3
Oeu056059.4 Olea europaea HOM05D004432 ORTHO05D005427 1.7e-114 416.8 415 60.5
TWI63G0296 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 3.9e-114 415.6 377 64.2
Duzib248G0466 Durio zibethinus HOM05D004432 ORTHO05D005427 5.1e-114 415.2 398 61.8
SGA_v2.0_scaffold298G47706 Striga asiatica HOM05D004432 ORTHO05D005427 6.6e-114 414.8 378 69.8
Duzib132G0752 Durio zibethinus HOM05D004432 ORTHO05D005427 8.7e-114 414.5 351 69.2
Atru.chr10.352 Acer truncatum HOM05D004432 ORTHO05D005427 1.5e-113 413.7 373 61.4
CsaV3_6G052770 Cucumis sativus L. HOM05D004432 ORTHO05D005427 1.9e-113 413.3 375 60.0
GSVIVG01012145001 Vitis vinifera HOM05D004432 ORTHO05D005427 9.6e-113 411.0 377 63.4
Sed0004537 Sechium edule HOM05D004432 ORTHO05D005427 2.1e-112 409.8 375 59.7
Cc09_g05240 Coffea canephora HOM05D004432 ORTHO05D005427 6.2e-112 408.3 355 62.5
Lj1A1149G74 Lonicera japonica HOM05D004432 ORTHO05D005427 1.4e-111 407.1 421 56.8
FAN25G3492 Fragaria x ananassa HOM05D004432 ORTHO05D005427 9.0e-111 404.4 368 61.1
TAR624G0396 Trochodendron aralioides HOM05D004432 ORTHO05D005427 1.5e-110 403.7 377 57.3
FvH4_3g12940 Fragaria vesca HOM05D004432 ORTHO05D005427 2.6e-110 402.9 368 60.9
FAN16G2829 Fragaria x ananassa HOM05D004432 ORTHO05D005427 9.9e-110 401.0 367 60.2
Potri.001G160700 Populus trichocarpa HOM05D004432 ORTHO05D005427 1.7e-109 400.2 347 62.8
Ciclev10015448m.g Citrus clementina HOM05D004432 ORTHO05D005427 2.2e-109 399.8 354 61.0
MBI18_g00544_MAGBIO Magnolia biondii HOM05D004432 ORTHO05D005427 2.2e-109 399.8 377 63.4
CANSAT35G1493 Cannabis sativa HOM05D004432 ORTHO05D005427 8.4e-109 397.9 373 61.7
TPR.G12851 Trifolium pratense HOM05D004432 ORTHO05D005427 8.4e-109 397.9 387 64.9
CiPaw.10G104800 Carya illinoinensis HOM05D004432 ORTHO05D005427 1.1e-108 397.5 356 62.1
PSO541G2602 Papaver somniferum HOM05D004432 ORTHO05D005427 1.4e-108 397.1 380 57.1
GSVIVG01015880001 Vitis vinifera HOM05D004432 ORTHO05D005427 3.2e-108 396.0 373 58.2
FAN21G3105 Fragaria x ananassa HOM05D004432 ORTHO05D005427 4.2e-108 395.6 368 60.1
Oeu018409.2 Olea europaea HOM05D004432 ORTHO05D005427 5.4e-108 395.2 426 62.0
ClCG01G025530 Citrullus lanatus HOM05D004432 ORTHO05D005427 7.1e-108 394.8 422 53.6
Eucgr.E04313 Eucalyptus grandis HOM05D004432 ORTHO05D005427 9.3e-108 394.4 371 64.7
Gorai.008G050900 Gossypium raimondii HOM05D004432 ORTHO05D005427 9.3e-108 394.4 345 64.6
RcHm_v2.0_Chr5g0021051 Rosa chinensis HOM05D004432 ORTHO05D005427 3.5e-107 392.5 377 60.7
TWI15G0381 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 6.0e-107 391.7 375 62.1
Prupe.4G117400 Prunus persica HOM05D004432 ORTHO05D005427 7.9e-107 391.3 372 62.6
Actinidia33704 Actinidia chinensis HOM05D004432 ORTHO05D005427 2.3e-106 389.8 355 60.8
Nn7g38330 Nelumbo nucifera HOM05D004432 ORTHO05D005427 3.0e-106 389.4 353 65.7
Dinv05655 Davidia involucrata HOM05D004432 ORTHO05D005427 1.5e-105 387.1 374 68.2
ECA232G3357 Erigeron canadensis HOM05D004432 ORTHO05D005427 1.5e-105 387.1 375 59.7
TWI34G0639 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 1.9e-105 386.7 389 58.9
MELO3C007033.2 Cucumis melo HOM05D004432 ORTHO05D005427 1.3e-104 384.0 353 58.6
Actinidia22430 Actinidia chinensis HOM05D004432 ORTHO05D005427 6.2e-104 381.7 353 65.2
CSS0046356 Camellia sinensis var. sinensis HOM05D004432 ORTHO05D005427 3.1e-103 379.4 393 56.2
Atru.chr8.662 Acer truncatum HOM05D004432 ORTHO05D005427 5.3e-103 378.6 355 60.0
Aqoxy1G01396 Aquilegia oxysepala HOM05D004432 ORTHO05D005427 1.2e-102 377.5 355 64.8
HanXRQChr09g0257831 Helianthus annuus HOM05D004432 ORTHO05D005427 5.8e-102 375.2 372 60.8
PGR042G3514 Punica granatum HOM05D004432 ORTHO05D005427 7.6e-102 374.8 379 57.3
AT1G30970 Arabidopsis thaliana HOM05D004432 ORTHO05D005427 1.7e-101 373.6 376 58.5
Cpa.g.sc30.114 Carica papaya HOM05D004432 ORTHO05D005427 4.9e-101 372.1 349 61.9
BcaB07g32757 Brassica carinata HOM05D004432 ORTHO05D005427 1.1e-100 370.9 377 59.7
SGA_v2.0_scaffold175G39329 Striga asiatica HOM05D004432 ORTHO05D005427 1.1e-100 370.9 442 51.4
FAN11G2748 Fragaria x ananassa HOM05D004432 ORTHO05D005427 3.2e-100 369.4 344 59.3
DCAR_003760 Daucus carota HOM05D004432 ORTHO05D005427 4.2e-100 369.0 355 60.6
arahy.Tifrunner.gnm1.ann1.AGE02H Arachis hypogaea HOM05D004432 ORTHO05D005427 7.1e-100 368.2 360 65.0
arahy.Tifrunner.gnm1.ann1.GLQ3B3 Arachis hypogaea HOM05D004432 ORTHO05D005427 3.5e-99 365.9 360 64.7
Carub.0001s2938 Capsella rubella HOM05D004432 ORTHO05D005427 6.0e-99 365.2 372 57.5
Lalb_Chr05g0222011 Lupinus albus HOM05D004432 ORTHO05D005427 6.0e-99 365.2 378 58.7
unitig_748.g7489 Utricularia gibba HOM05D004432 ORTHO05D005427 6.0e-99 365.2 374 58.8
PSO675G3183 Papaver somniferum HOM05D004432 ORTHO05D005427 1.3e-98 364.0 351 55.6
Sabra01G0131600 Salix brachista HOM05D004432 ORTHO05D005427 3.0e-98 362.8 373 63.0
TWI15G1036 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 1.1e-97 360.9 369 57.2
VMungo0251G3730 Vigna mungo HOM05D004432 ORTHO05D005427 1.1e-97 360.9 373 61.4
BcaB04g18194 Brassica carinata HOM05D004432 ORTHO05D005427 5.7e-97 358.6 370 57.8
AL1G45380 Arabidopsis lyrata HOM05D004432 ORTHO05D005427 3.1e-95 352.8 351 57.3
BcaC07g37789 Brassica carinata HOM05D004432 ORTHO05D005427 1.2e-94 350.9 374 55.1
Thhalv10008022m.g Eutrema salsugineum HOM05D004432 ORTHO05D005427 3.4e-94 349.4 372 60.5
Glyma.08G049300 Glycine max HOM05D004432 ORTHO05D005427 3.4e-94 349.4 363 55.9
Medtr8g106220 Medicago truncatula HOM05D004432 ORTHO05D005427 5.0e-93 345.5 357 62.2
Lsat_1_v5_gn_8_106840 Lactuca sativa HOM05D004432 ORTHO05D005427 8.4e-93 344.7 370 55.9
Aa31LG6G12370 Aethionema arabicum HOM05D004432 ORTHO05D005427 1.9e-92 343.6 348 57.2
Glyma.05G241800 Glycine max HOM05D004432 ORTHO05D005427 4.2e-92 342.4 401 53.1
Sp1g26830 Schrenkiella parvula HOM05D004432 ORTHO05D005427 9.3e-92 341.3 353 58.6
THA.LOC104798567 Tarenaya hassleriana HOM05D004432 ORTHO05D005427 2.1e-91 340.1 351 62.4
EL10Ac6g15345 Beta vulgaris HOM05D004432 ORTHO05D005427 6.7e-90 335.1 379 56.5
Psat7g005440 Pisum sativum HOM05D004432 ORTHO05D005427 8.7e-90 334.7 357 57.7
Sc16g0004480 Simmondsia chinensis HOM05D004432 ORTHO05D005427 8.7e-90 334.7 354 61.9
A08p10850 Brassica napus HOM05D004432 ORTHO05D005427 4.3e-89 332.4 354 54.2
BraA09t39051Z Brassica rapa HOM05D004432 ORTHO05D005427 2.2e-88 330.1 371 56.1
HPP92_024334 Vanilla planifolia HOM05D004432 ORTHO05D005427 2.8e-88 329.7 360 54.7
BcaC05g27130 Brassica carinata HOM05D004432 ORTHO05D005427 5.3e-87 325.5 372 57.5
C05p30150 Brassica napus HOM05D004432 ORTHO05D005427 5.3e-87 325.5 372 57.5
BolC5t31752H Brassica oleracea HOM05D004432 ORTHO05D005427 5.3e-87 325.5 372 56.7
MSTRG.16369 Avicennia marina HOM05D004432 ORTHO05D005427 6.9e-87 325.1 354 56.2
Ca_17239_v3 Cicer arietinum L. HOM05D004432 ORTHO05D005427 2.0e-86 323.6 361 57.9
ATR0568G227 Amborella trichopoda HOM05D004432 ORTHO05D005427 7.7e-86 321.6 388 55.2
AUR62017849 Chenopodium quinoa HOM05D004432 ORTHO05D005427 1.7e-85 320.5 418 50.7
BolC8t48181H Brassica oleracea HOM05D004432 ORTHO05D005427 3.8e-85 319.3 353 53.0
HPP92_006155 Vanilla planifolia HOM05D004432 ORTHO05D005427 5.0e-85 318.9 356 52.8
Os09g0560900 Oryza sativa ssp. japonica HOM05D004432 ORTHO05D005427 2.5e-84 316.6 385 50.9
Lalb_Chr09g0330711 Lupinus albus HOM05D004432 ORTHO05D005427 5.5e-84 315.5 358 58.4
Lalb_Chr10g0095541 Lupinus albus HOM05D004432 ORTHO05D005427 6.7e-82 308.5 374 52.9
BraA08t33081Z Brassica rapa HOM05D004432 ORTHO05D005427 4.3e-81 305.8 349 52.4
SEGI_00495 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 4.3e-81 305.8 395 54.2
Cfa001128 Carpinus fangiana HOM05D004432 ORTHO05D005427 5.7e-81 305.4 304 59.2
Lj4g0008002 Lotus japonicus HOM05D004432 ORTHO05D005427 5.7e-81 305.4 389 48.6
Hund04373 Selenicereus undatus HOM05D004432 ORTHO05D005427 1.3e-80 304.3 500 44.4
AUR62003535 Chenopodium quinoa HOM05D004432 ORTHO05D005427 1.8e-79 300.4 353 53.0
QL11p012272 Quercus lobata HOM05D004432 ORTHO05D005427 2.4e-79 300.1 279 60.6
vmacro03556 Vaccinium macrocarpon HOM05D004432 ORTHO05D005427 2.4e-79 300.1 480 46.0
A09p35240 Brassica napus HOM05D004432 ORTHO05D005427 2.0e-78 297.0 350 54.6
TWI32G0924 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 1.2e-75 287.7 313 58.1
CDE01G0579 Ceratophyllum demersum HOM05D007061 ORTHO05D009017 5.1e-74 282.3 333 50.2
Potri.003G074200 Populus trichocarpa HOM05D004432 ORTHO05D005427 4.8e-72 275.8 185 75.1
Mapoly0070s0095 Marchantia polymorpha HOM05D004432 ORTHO05D005427 1.4e-71 274.2 396 48.7
TAR629G1033 Trochodendron aralioides HOM05D004432 ORTHO05D005427 2.4e-71 273.5 191 69.1
Ah.03g147620 Amaranthus hybridus HOM05D004432 ORTHO05D005427 7.0e-71 271.9 339 51.3
AagrBONN_evm.TU.Sc2ySwM_344.4234 Anthoceros agrestis HOM05D004432 ORTHO05D005427 1.8e-66 257.3 392 45.2
Pp3c22_1400 Physcomitrium patens HOM05D004432 ORTHO05D005427 4.4e-65 252.7 403 50.9
CiPaw.09G137500 Carya illinoinensis HOM05D004432 ORTHO05D005427 9.4e-60 235.0 167 71.9
SMO239G0124 Selaginella moellendorffii HOM05D004432 ORTHO05D005427 1.2e-59 234.6 372 44.9
Rhsim13G0133800 Rhododendron simsii HOM05D004432 ORTHO05D005427 5.4e-55 219.2 303 52.1
RhsimUnG0176800 Rhododendron simsii HOM05D004432 ORTHO05D005427 5.4e-55 219.2 303 52.1
Haze_05275 Corylus avellana HOM05D004432 ORTHO05D005427 1.6e-51 207.6 271 55.4
SEGI_03989 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 8.0e-51 205.3 201 57.7
Dinv23013 Davidia involucrata HOM05D004432 ORTHO05D005427 8.8e-50 201.8 249 49.4
Nitab4.5_0004903g0050 Nicotiana tabacum HOM05D004432 ORTHO05D005427 9.8e-49 198.4 225 59.6
Haze_05262 Corylus avellana HOM05D004432 ORTHO05D005427 2.7e-46 190.3 98 89.8
Zm00001eb104750 Zea mays HOM05D004432 ORTHO05D005427 4.3e-44 183.0 321 41.7
Rhsim13G0133700 Rhododendron simsii HOM05D004432 ORTHO05D005427 2.1e-43 180.6 99 86.9
RhsimUnG0176700 Rhododendron simsii HOM05D004432 ORTHO05D005427 2.1e-43 180.6 99 86.9
CBR_g1074 Chara braunii HOM05D004432 ORTHO05D005427 2.2e-40 170.6 223 47.1
Dinv23014 Davidia involucrata HOM05D004432 ORTHO05D005427 2.7e-38 163.7 93 86.0
CiPaw.09G137600 Carya illinoinensis HOM05D004432 ORTHO05D005427 2.3e-37 160.6 149 63.1
SHI20754 Sapria himalayana HOM05D000030 ORTHO05D000009 3.6e-35 153.3 697 27.4
SEGI_09071 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 6.0e-30 136.0 93 75.3
CARHR030510 Cardamine hirsuta HOM05D004432 ORTHO05D005427 3.6e-27 126.7 211 43.6
Atru.chr10.360 Acer truncatum HOM05D004432 ORTHO05D005427 3.4e-25 120.2 223 45.3
Sopen12g027920 Solanum pennellii HOM05D004432 ORTHO05D005427 5.8e-25 119.4 70 77.1
Dinv01000 Davidia involucrata HOM05D004432 ORTHO05D005427 7.5e-25 119.0 179 52.5
Cre06.g305200 Chlamydomonas reinhardtii HOM05D004432 ORTHO05D005427 1.3e-24 118.2 111 52.3
Pp3c19_17160 Physcomitrium patens HOM05D004432 ORTHO05D005427 4.9e-24 116.3 138 50.7
MCO08G042 Micromonas commoda HOM05D004432 ORTHO05D005427 3.2e-23 113.6 181 44.2
CAN.G958.2 Capsicum annuum HOM05D004432 ORTHO05D005427 2.7e-22 110.5 76 69.7
Aqoxy1G01395 Aquilegia oxysepala HOM05D004432 ORTHO05D005427 7.8e-22 109.0 356 30.3
Cfa025961 Carpinus fangiana HOM05D004432 ORTHO05D005427 7.8e-22 109.0 120 44.2
GSVIVG01015874001 Vitis vinifera HOM05D004432 ORTHO05D005427 1.1e-20 105.1 65 76.9
Lj1g0003853 Lotus japonicus HOM05D004432 ORTHO05D005427 1.6e-11 74.7 63 57.1
CAN.G270.3 Capsicum annuum HOM05D004432 ORTHO05D005427 2.7e-06 57.4 46 63.0
Psat7g229080 Pisum sativum HOM05D004432 ORTHO05D005427 4.6e-06 56.6 74 44.6
AUR62036780 Chenopodium quinoa HOM05D056044 ORTHO05D137976 6.0e-06 56.2 58 48.3
Sopen12g027930 Solanum pennellii HOM05D004432 ORTHO05D051027 6.0e-06 56.2 45 68.9


User provided reference genes

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