Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g032060.1 Solanum lycopersicum HOM05D000029 ORTHO05D030553 8.0e-70 267.7 222 100.0
Sopen12g003450 Solanum pennellii HOM05D000029 ORTHO05D001072 1.8e-50 203.4 214 82.7
CAN.G1241.29 Capsicum annuum HOM05D000029 ORTHO05D001072 5.1e-24 115.5 161 62.7
Solyc12g008500.2 Solanum lycopersicum HOM05D000029 ORTHO05D001072 5.1e-24 115.5 154 64.3
Nitab4.5_0001492g0080 Nicotiana tabacum HOM05D000029 ORTHO05D001072 1.4e-18 97.4 216 53.2
Haze_12930 Corylus avellana HOM05D013352 ORTHO05D013588 3.2e-18 96.3 233 35.2
Nitab4.5_0004164g0030 Nicotiana tabacum HOM05D000029 ORTHO05D001072 5.4e-18 95.5 173 52.0
MD02G1066200 Malus domestica HOM05D000029 ORTHO05D001072 2.3e-16 90.1 238 46.2
Peaxi162Scf00944g00027 Petunia axillaris HOM05D000029 ORTHO05D001072 1.9e-15 87.0 133 57.9
MD02G1066400 Malus domestica HOM05D000029 ORTHO05D001072 4.3e-15 85.9 238 47.5
Eucgr.C00564 Eucalyptus grandis HOM05D000029 ORTHO05D001072 2.1e-14 83.6 160 36.9
MD02G1066300 Malus domestica HOM05D000029 ORTHO05D001072 4.8e-14 82.4 238 52.9
Cc06_g10520 Coffea canephora HOM05D000029 ORTHO05D001072 2.6e-12 76.6 171 36.8
Duzib168G1136 Durio zibethinus HOM05D000029 ORTHO05D001072 1.7e-11 73.9 150 50.7
THA.LOC104811260 Tarenaya hassleriana HOM05D000029 ORTHO05D001072 1.7e-11 73.9 175 46.9
Haze_25826 Corylus avellana HOM05D000029 ORTHO05D001072 2.2e-11 73.6 243 47.3
Gorai.009G048200 Gossypium raimondii HOM05D000029 ORTHO05D001072 2.9e-11 73.2 148 41.2
FvH4_1g07450 Fragaria vesca HOM05D000029 ORTHO05D001072 6.4e-11 72.0 128 34.4
Gohir.D05G046900 Gossypium hirsutum HOM05D000029 ORTHO05D001072 6.4e-11 72.0 148 40.5
Sp2g21740 Schrenkiella parvula HOM05D000029 ORTHO05D001072 8.4e-11 71.6 239 43.5
Migut.K00544 Erythranthe guttata HOM05D000029 ORTHO05D001072 1.9e-10 70.5 151 52.3
Manes.16G073300 Manihot esculenta HOM05D000029 ORTHO05D001072 1.9e-10 70.5 149 32.9
EL10Ac2g03974 Beta vulgaris HOM05D000029 ORTHO05D001072 3.2e-10 69.7 153 37.9
A02p39530 Brassica napus HOM05D000029 ORTHO05D001072 3.2e-10 69.7 175 48.0
Peaxi162Scf01400g00002 Petunia axillaris HOM05D000029 ORTHO05D001072 3.2e-10 69.7 118 42.4
Actinidia26071 Actinidia chinensis HOM05D000029 ORTHO05D001072 4.2e-10 69.3 148 32.4
CSS0006646 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D001072 5.4e-10 68.9 154 29.2
CSS0024069 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D001072 5.4e-10 68.9 150 34.0
CSS0038285 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D001072 5.4e-10 68.9 154 29.2
Prupe.7G218900 Prunus persica HOM05D000029 ORTHO05D001072 7.1e-10 68.6 239 55.6
Ah.10g034830 Amaranthus hybridus HOM05D000029 ORTHO05D001072 9.3e-10 68.2 152 36.8
PSO832G2913 Papaver somniferum HOM05D000029 ORTHO05D001072 9.3e-10 68.2 169 47.3
ECA236G2912 Erigeron canadensis HOM05D002247 ORTHO05D001072 1.2e-09 67.8 65 53.8
Manes.03G060600 Manihot esculenta HOM05D000029 ORTHO05D001072 2.1e-09 67.0 151 38.4
Phvul.004G136500 Phaseolus vulgaris HOM05D000029 ORTHO05D001072 3.5e-09 66.2 133 41.4
Aa31LG11G4940 Aethionema arabicum HOM05D000029 ORTHO05D001072 4.6e-09 65.9 175 43.4
Rhsim01G0083700 Rhododendron simsii HOM05D000029 ORTHO05D001072 4.6e-09 65.9 150 53.3
CiPaw.04G156600 Carya illinoinensis HOM05D000029 ORTHO05D001072 7.9e-09 65.1 217 33.2
Gohir.A06G091400 Gossypium hirsutum HOM05D000029 ORTHO05D001072 7.9e-09 65.1 150 41.3
Potri.018G088100 Populus trichocarpa HOM05D000029 ORTHO05D001072 7.9e-09 65.1 117 62.4
Glyma.16G078800 Glycine max HOM05D000029 ORTHO05D001072 1.3e-08 64.3 235 47.7
Cfa002229 Carpinus fangiana HOM05D000029 ORTHO05D001072 1.8e-08 63.9 185 35.7
Cfa003172 Carpinus fangiana HOM05D000029 ORTHO05D001072 1.8e-08 63.9 177 36.2
Gohir.D06G090700 Gossypium hirsutum HOM05D000029 ORTHO05D001072 1.8e-08 63.9 150 41.3
GSVIVG01035304001 Vitis vinifera HOM05D000029 ORTHO05D001072 1.8e-08 63.9 157 39.5
Eucgr.C00557 Eucalyptus grandis HOM05D000029 ORTHO05D001072 2.3e-08 63.5 128 34.4
MBI01_g10124_MAGBIO Magnolia biondii HOM05D000029 ORTHO05D001072 2.3e-08 63.5 171 38.0
SalBow1G1615 Salvia bowleyana HOM05D000029 ORTHO05D001072 2.3e-08 63.5 150 45.3
SHI28906 Sapria himalayana HOM05D000029 ORTHO05D001072 2.3e-08 63.5 150 42.0
Glyma.16G078900 Glycine max HOM05D000029 ORTHO05D001072 3.0e-08 63.2 151 37.1
HanXRQChr16g0507841 Helianthus annuus HOM05D000029 ORTHO05D001072 3.0e-08 63.2 57 50.9
Rhsim01G0075000 Rhododendron simsii HOM05D000029 ORTHO05D001072 3.9e-08 62.8 151 50.3
C02p59250 Brassica napus HOM05D000029 ORTHO05D001072 6.7e-08 62.0 241 40.7
Os02g0227700 Oryza sativa ssp. japonica HOM05D000029 ORTHO05D001072 8.7e-08 61.6 152 51.3
BraA02t08919Z Brassica rapa HOM05D000029 ORTHO05D001072 1.1e-07 61.2 235 40.4
FvH4_1g06260 Fragaria vesca HOM05D000029 ORTHO05D001072 1.1e-07 61.2 128 61.7
Eucgr.C00563 Eucalyptus grandis HOM05D000029 ORTHO05D001072 1.5e-07 60.8 125 32.8
FvH4_1g06220 Fragaria vesca HOM05D000029 ORTHO05D001072 1.5e-07 60.8 128 60.9
FAN19G3160 Fragaria x ananassa HOM05D000029 ORTHO05D001072 1.5e-07 60.8 128 60.9
Phvul.004G175700 Phaseolus vulgaris HOM05D000029 ORTHO05D001072 1.9e-07 60.5 61 50.8
TWI32G0710 Tripterygium wilfordii HOM05D000029 ORTHO05D001072 2.5e-07 60.1 172 46.5
Lj4P385T11 Lonicera japonica HOM05D000029 ORTHO05D001072 3.3e-07 59.7 68 48.5
FvH4_1g06180 Fragaria vesca HOM05D000029 ORTHO05D001072 4.3e-07 59.3 128 59.4
FAN19G0083 Fragaria x ananassa HOM05D000029 ORTHO05D001072 4.3e-07 59.3 128 60.2
FAN19G1935 Fragaria x ananassa HOM05D000029 ORTHO05D001072 4.3e-07 59.3 128 59.4
RhsimUnG0233200 Rhododendron simsii HOM05D000029 ORTHO05D001072 4.3e-07 59.3 168 47.6
Sabra11G0083800 Salix brachista HOM05D032775 ORTHO05D030553 4.3e-07 59.3 56 50.0
THA.LOC104799184 Tarenaya hassleriana HOM05D000029 ORTHO05D001072 4.3e-07 59.3 154 42.2
Duzib187G0560 Durio zibethinus HOM05D000029 ORTHO05D001072 5.6e-07 58.9 150 48.0
PGSC0003DMG400000358 Solanum tuberosum HOM05D000029 ORTHO05D001072 5.6e-07 58.9 94 42.6
Zm00001eb204350 Zea mays HOM05D000029 ORTHO05D001072 9.6e-07 58.2 155 33.5
C07p42010 Brassica napus HOM05D000029 ORTHO05D001072 1.3e-06 57.8 149 39.6
Nitab4.5_0000566g0070 Nicotiana tabacum HOM05D000029 ORTHO05D001072 1.3e-06 57.8 36 69.4
Rhsim11G0049700 Rhododendron simsii HOM05D000029 ORTHO05D001072 1.3e-06 57.8 89 68.5
Thecc.09G100200 Theobroma cacao HOM05D000029 ORTHO05D001072 1.3e-06 57.8 49 55.1
TPR.G31362 Trifolium pratense HOM05D000029 ORTHO05D001072 1.3e-06 57.8 148 32.4
GSVIVG01035309001 Vitis vinifera HOM05D000029 ORTHO05D001072 1.3e-06 57.8 147 29.9
BolC7t44731H Brassica oleracea HOM05D000029 ORTHO05D001072 1.6e-06 57.4 149 38.9
Eucgr.C00558 Eucalyptus grandis HOM05D000029 ORTHO05D001072 1.6e-06 57.4 132 34.1
Eucgr.C00991 Eucalyptus grandis HOM05D000029 ORTHO05D013588 1.6e-06 57.4 125 36.0
FAN23G2892 Fragaria x ananassa HOM05D000029 ORTHO05D001072 1.6e-06 57.4 128 57.8
MD15G1196900 Malus domestica HOM05D000029 ORTHO05D001072 1.6e-06 57.4 168 45.8
Psat1g047560 Pisum sativum HOM05D000029 ORTHO05D001072 1.6e-06 57.4 64 50.0
arahy.Tifrunner.gnm1.ann1.3T3YD2 Arachis hypogaea HOM05D000029 ORTHO05D001072 2.1e-06 57.0 38 63.2
QL12p040963 Quercus lobata HOM05D000029 ORTHO05D001072 2.1e-06 57.0 172 45.3
arahy.Tifrunner.gnm1.ann1.ZXD46E Arachis hypogaea HOM05D000029 ORTHO05D001072 2.8e-06 56.6 38 63.2
Prupe.7G219500 Prunus persica HOM05D000029 ORTHO05D001072 2.8e-06 56.6 239 42.7
Lj2g0023814 Lotus japonicus HOM05D000029 ORTHO05D001072 3.6e-06 56.2 44 56.8
Medtr6g068970 Medicago truncatula HOM05D000029 ORTHO05D001072 3.6e-06 56.2 148 31.1
Rhsim11G0050500 Rhododendron simsii HOM05D000029 ORTHO05D001072 3.6e-06 56.2 90 68.9
Rhsim11G0050600 Rhododendron simsii HOM05D000029 ORTHO05D001072 3.6e-06 56.2 93 66.7
TPR.G33039 Trifolium pratense HOM05D032775 ORTHO05D030553 3.6e-06 56.2 65 46.2
CiPaw.04G156100 Carya illinoinensis HOM05D000029 ORTHO05D001072 4.8e-06 55.8 217 38.7
TPR.G21367 Trifolium pratense HOM05D000029 ORTHO05D001072 4.8e-06 55.8 36 66.7
GSVIVG01035311001 Vitis vinifera HOM05D000029 ORTHO05D001072 4.8e-06 55.8 116 32.8
MD08G1110500 Malus domestica HOM05D000029 ORTHO05D001072 6.2e-06 55.5 157 46.5
Rhsim11G0050000 Rhododendron simsii HOM05D000029 ORTHO05D001072 6.2e-06 55.5 90 70.0
Rhsim11G0050100 Rhododendron simsii HOM05D000029 ORTHO05D001072 6.2e-06 55.5 90 70.0
Eucgr.C00984 Eucalyptus grandis HOM05D000029 ORTHO05D001072 8.1e-06 55.1 131 48.1
Thhalv10003585m.g Eutrema salsugineum HOM05D000029 ORTHO05D001072 8.1e-06 55.1 66 47.0
TPR.G432 Trifolium pratense HOM05D000029 ORTHO05D001072 8.1e-06 55.1 31 74.2


User provided reference genes

Program Settings