Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g031980.3 Solanum lycopersicum HOM05D006242 ORTHO05D007936 1.7e-168 595.9 298 100.0
PGSC0003DMG400014939 Solanum tuberosum HOM05D006242 ORTHO05D007936 2.6e-164 582.0 298 97.0
CAN.G79.44 Capsicum annuum HOM05D006242 ORTHO05D007936 1.2e-145 520.0 293 88.1
Nitab4.5_0008021g0020 Nicotiana tabacum HOM05D006242 ORTHO05D007936 1.2e-140 503.4 311 82.3
Dinv10532 Davidia involucrata HOM05D006242 ORTHO05D007936 8.1e-126 454.1 293 74.4
Peaxi162Scf00198g01026 Petunia axillaris HOM05D006242 ORTHO05D007936 7.6e-124 447.6 292 78.1
Rhsim06G0063600 Rhododendron simsii HOM05D006242 ORTHO05D007936 8.4e-123 444.1 293 73.4
Actinidia22421 Actinidia chinensis HOM05D006242 ORTHO05D007936 7.1e-122 441.0 293 73.4
MD10G1229500 Malus domestica HOM05D006242 ORTHO05D007936 1.2e-121 440.3 290 72.4
Cfa000677 Carpinus fangiana HOM05D006242 ORTHO05D007936 4.6e-121 438.3 290 71.0
GSVIVG01012122001 Vitis vinifera HOM05D006242 ORTHO05D007936 6.0e-121 438.0 295 73.6
Manes.03G074100 Manihot esculenta HOM05D006242 ORTHO05D007936 5.1e-120 434.9 293 70.6
Prupe.4G115300 Prunus persica HOM05D006242 ORTHO05D007936 5.1e-120 434.9 290 70.7
QL11p013482 Quercus lobata HOM05D006242 ORTHO05D007936 6.6e-120 434.5 290 71.7
Atru.chr10.429 Acer truncatum HOM05D006242 ORTHO05D007936 8.6e-120 434.1 292 70.5
Haze_06141 Corylus avellana HOM05D006242 ORTHO05D007936 2.5e-119 432.6 290 71.0
Sabra01G0132400 Salix brachista HOM05D006242 ORTHO05D007936 3.3e-119 432.2 291 70.4
Duzib248G1438 Durio zibethinus HOM05D006242 ORTHO05D007936 1.6e-118 429.9 295 71.5
Hma1.2p1_1499F.1_g287250 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 1.6e-118 429.9 293 69.6
Thecc.02G006000 Theobroma cacao HOM05D006242 ORTHO05D007936 6.2e-118 427.9 293 70.3
Potri.001G159600 Populus trichocarpa HOM05D006242 ORTHO05D007936 8.1e-118 427.6 291 69.1
DCAR_007782 Daucus carota HOM05D006242 ORTHO05D007936 1.8e-117 426.4 293 71.0
RcHm_v2.0_Chr5g0020621 Rosa chinensis HOM05D006242 ORTHO05D007936 8.9e-117 424.1 290 69.7
Nitab4.5_0000138g0120 Nicotiana tabacum HOM05D006242 ORTHO05D007936 9.9e-116 420.6 299 74.2
FvH4_3g12650 Fragaria vesca HOM05D006242 ORTHO05D007936 2.9e-115 419.1 290 69.7
FAN21G1956 Fragaria x ananassa HOM05D006242 ORTHO05D007936 2.9e-115 419.1 290 69.3
Cc00_g22870 Coffea canephora HOM05D006242 ORTHO05D007936 3.8e-115 418.7 293 72.7
TWI38G1455 Tripterygium wilfordii HOM05D006242 ORTHO05D007936 1.1e-114 417.2 297 67.0
Oeu058943.1 Olea europaea HOM05D006242 ORTHO05D007936 1.9e-114 416.4 309 66.0
FAN25G2599 Fragaria x ananassa HOM05D006242 ORTHO05D007936 5.4e-114 414.8 290 69.0
Gohir.D12G047300 Gossypium hirsutum HOM05D006242 ORTHO05D007936 5.4e-114 414.8 294 68.0
Gorai.008G050000 Gossypium raimondii HOM05D006242 ORTHO05D007936 1.6e-113 413.3 294 67.7
PSO541G0450 Papaver somniferum HOM05D006242 ORTHO05D007936 1.3e-112 410.2 293 66.6
Gohir.A12G048500 Gossypium hirsutum HOM05D006242 ORTHO05D007936 1.7e-112 409.8 294 67.3
Cpa.g.sc30.139 Carica papaya HOM05D006242 ORTHO05D007936 2.3e-112 409.5 294 66.3
PSO675G0930 Papaver somniferum HOM05D006242 ORTHO05D007936 5.1e-112 408.3 293 66.2
SGA_v2.0_scaffold51G18672 Striga asiatica HOM05D006242 ORTHO05D007936 2.5e-111 406.0 294 68.0
CANSAT35G0032 Cannabis sativa HOM05D006242 ORTHO05D007936 4.3e-111 405.2 294 65.6
MBI02_g26996_MAGBIO Magnolia biondii HOM05D006242 ORTHO05D007936 4.3e-111 405.2 290 66.9
Sopen02g010240 Solanum pennellii HOM05D006242 ORTHO05D007936 4.8e-110 401.7 201 99.0
Cc09_g05740 Coffea canephora HOM05D006242 ORTHO05D007936 6.2e-110 401.4 297 70.7
ECA232G2813 Erigeron canadensis HOM05D006242 ORTHO05D007936 3.1e-109 399.1 290 69.0
A05p10660 Brassica napus HOM05D003281 ORTHO05D004128 4.0e-109 398.7 294 65.3
Eucgr.B01565 Eucalyptus grandis HOM05D006242 ORTHO05D007936 4.0e-109 398.7 295 66.8
Thhalv10017018m.g Eutrema salsugineum HOM05D006242 ORTHO05D007936 5.3e-109 398.3 295 66.8
HanXRQChr12g0381511 Helianthus annuus HOM05D006242 ORTHO05D007936 1.2e-108 397.1 293 67.9
Lj6g0025800 Lotus japonicus HOM05D006242 ORTHO05D007936 4.4e-108 395.2 292 63.0
C04p13760 Brassica napus HOM05D003281 ORTHO05D004128 5.8e-108 394.8 294 65.0
BolC4t22966H Brassica oleracea HOM05D003281 ORTHO05D004128 5.8e-108 394.8 294 65.0
Lalb_Chr19g0129141 Lupinus albus HOM05D006242 ORTHO05D007936 5.8e-108 394.8 293 63.8
MSTRG.20044 Avicennia marina HOM05D006242 ORTHO05D007936 1.3e-107 393.7 293 67.6
FAN16G0457 Fragaria x ananassa HOM05D006242 ORTHO05D007936 4.9e-107 391.7 317 62.5
Carub.0004s1673 Capsella rubella HOM05D006242 ORTHO05D007936 1.1e-106 390.6 295 64.7
PGR004G2427 Punica granatum HOM05D006242 ORTHO05D007936 1.4e-106 390.2 294 66.3
Migut.K01175 Erythranthe guttata HOM05D006242 ORTHO05D007936 4.2e-106 388.7 295 66.8
Medtr1g050428 Medicago truncatula HOM05D006242 ORTHO05D007936 7.1e-106 387.9 288 62.5
AL4G31060 Arabidopsis lyrata HOM05D006242 ORTHO05D007936 1.6e-105 386.7 311 61.4
SalBow7G3063 Salvia bowleyana HOM05D006242 ORTHO05D007936 2.1e-105 386.3 297 66.0
Cc09_g05610 Coffea canephora HOM05D006242 ORTHO05D007936 7.9e-105 384.4 274 71.5
Ca_19722_v3 Cicer arietinum L. HOM05D006242 ORTHO05D007936 1.0e-104 384.0 292 61.6
Aa31LG9G16170 Aethionema arabicum HOM05D003281 ORTHO05D004128 6.6e-104 381.3 291 65.3
Lj1A1147G28 Lonicera japonica HOM05D006242 ORTHO05D007936 4.3e-103 378.6 267 71.9
ClCG01G025640 Citrullus lanatus HOM05D006242 ORTHO05D007936 5.6e-103 378.3 291 64.3
EL10Ac7g16757 Beta vulgaris HOM05D006242 ORTHO05D007936 1.6e-102 376.7 294 62.6
CsaV3_6G052870 Cucumis sativus L. HOM05D006242 ORTHO05D007936 8.1e-102 374.4 291 63.2
Ciclev10016161m.g Citrus clementina HOM05D006242 ORTHO05D007936 1.2e-100 370.5 292 62.3
Sed0024740 Sechium edule HOM05D006242 ORTHO05D007936 5.8e-100 368.2 294 60.9
Glyma.02G163900 Glycine max HOM05D006242 ORTHO05D007936 1.1e-98 364.0 293 59.7
Sc17g0004220 Simmondsia chinensis HOM05D006242 ORTHO05D007936 1.4e-98 363.6 257 67.3
CSS0025117 Camellia sinensis var. sinensis HOM05D006242 ORTHO05D007936 1.2e-97 360.5 238 74.4
MELO3C007020.2 Cucumis melo HOM05D006242 ORTHO05D007936 2.1e-97 359.8 326 56.7
THA.LOC104798560 Tarenaya hassleriana HOM05D006242 ORTHO05D007936 3.5e-97 359.0 361 52.4
CDE05G0364 Ceratophyllum demersum HOM05D006242 ORTHO05D007936 3.9e-96 355.5 299 59.2
Zm00001eb233240 Zea mays HOM05D006242 ORTHO05D007936 1.1e-95 354.0 291 58.1
Sp2g07040 Schrenkiella parvula HOM05D006242 ORTHO05D007936 2.5e-95 352.8 276 62.7
Psat6g094920 Pisum sativum HOM05D006242 ORTHO05D007936 5.8e-92 341.7 259 62.2
BcaC02g11584 Brassica carinata HOM05D006242 ORTHO05D007936 1.7e-91 340.1 292 59.2
TPR.G10622 Trifolium pratense HOM05D006242 ORTHO05D007936 2.9e-91 339.3 292 55.8
Hma1.2p1_1700F.1_g298210 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 3.8e-91 339.0 310 56.5
SpUn0157_0010 Schrenkiella parvula HOM05D006242 ORTHO05D007936 1.4e-90 337.0 273 61.9
COL.COLO4_17635 Corchorus olitorius HOM05D006242 ORTHO05D007936 1.0e-88 330.9 257 63.8
SEGI_06259 Sequoiadendron giganteum HOM05D006242 ORTHO05D007936 1.8e-88 330.1 298 53.7
arahy.Tifrunner.gnm1.ann1.PA3R73 Arachis hypogaea HOM05D006242 ORTHO05D007936 8.2e-86 321.2 283 57.2
Lsat_1_v5_gn_6_96480 Lactuca sativa HOM05D006242 ORTHO05D007936 7.6e-84 314.7 227 69.2
Cc09_g05660 Coffea canephora HOM05D006242 ORTHO05D007936 1.3e-83 313.9 230 71.3
Hma1.2p1_1499F.1_g287260 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 1.4e-82 310.5 201 73.1
HanXRQChr12g0369481 Helianthus annuus HOM05D006242 ORTHO05D007936 2.5e-82 309.7 241 66.8
CiPaw.09G074600 Carya illinoinensis HOM05D006242 ORTHO05D007936 3.6e-81 305.8 209 69.9
Lj6g0012918 Lotus japonicus HOM05D006242 ORTHO05D007936 2.9e-75 286.2 200 67.0
arahy.Tifrunner.gnm1.ann1.VZGM4G Arachis hypogaea HOM05D006242 ORTHO05D007936 2.5e-74 283.1 257 55.6
AT2G35035 Arabidopsis thaliana HOM05D006242 ORTHO05D007936 1.1e-71 274.2 286 50.7
Phvul.007G242500 Phaseolus vulgaris HOM05D006242 ORTHO05D007936 2.0e-68 263.5 175 69.1
Pp3c12_18460 Physcomitrium patens HOM05D006242 ORTHO05D007936 4.5e-68 262.3 304 44.1
SMO203G0088 Selaginella moellendorffii HOM05D006242 ORTHO05D007936 2.2e-67 260.0 291 45.0
Mapoly0026s0041 Marchantia polymorpha HOM05D006242 ORTHO05D007936 5.0e-67 258.8 293 44.4
AagrBONN_evm.TU.Sc2ySwM_228.1028 Anthoceros agrestis HOM05D006242 ORTHO05D007936 1.1e-66 257.7 290 45.2
Nn7g38280 Nelumbo nucifera HOM05D006242 ORTHO05D007936 1.1e-66 257.7 293 50.2
CARHR129200 Cardamine hirsuta HOM05D006242 ORTHO05D007936 1.6e-65 253.8 199 60.8
TAR624G0344 Trochodendron aralioides HOM05D006242 ORTHO05D007936 8.8e-64 248.1 184 65.2
Glyma.20G074000 Glycine max HOM05D006242 ORTHO05D007936 2.9e-59 233.0 207 55.1
Cc09_g05680 Coffea canephora HOM05D006242 ORTHO05D007936 2.1e-57 226.9 188 63.8
AUR62040160 Chenopodium quinoa HOM05D006242 ORTHO05D007936 2.6e-55 219.9 175 61.1
ATR1094G001 Amborella trichopoda HOM05D006242 ORTHO05D007936 2.8e-54 216.5 214 52.3
VMungo0720G1734 Vigna mungo HOM05D006242 ORTHO05D007936 5.0e-51 205.7 185 56.8
CBR_g46754 Chara braunii HOM05D006242 ORTHO05D007936 1.5e-47 194.1 237 41.8
unitig_37.g12020 Utricularia gibba HOM05D006242 ORTHO05D007936 5.2e-40 169.1 138 60.1
HPP92_011011 Vanilla planifolia HOM05D006242 ORTHO05D007936 6.8e-40 168.7 137 62.0
Hma1.2p1_1700F.1_g298200 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 1.7e-35 154.1 96 75.0
GSVIVG01006138001 Vitis vinifera HOM05D006242 ORTHO05D007936 1.9e-34 150.6 95 76.8
SGA_v2.0_scaffold4G02502 Striga asiatica HOM05D006242 ORTHO05D007936 3.6e-33 146.4 96 75.0
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 6.1e-33 145.6 330 32.1
Cc09_g05630 Coffea canephora HOM05D006242 ORTHO05D007936 8.0e-33 145.2 145 55.9
Aqoxy1G01391 Aquilegia oxysepala HOM05D006242 ORTHO05D007936 6.4e-30 135.6 94 71.3
Hund15670 Selenicereus undatus HOM05D006242 ORTHO05D007936 2.0e-28 130.6 95 64.2
BraA05t20007Z Brassica rapa HOM05D003281 ORTHO05D004128 4.6e-28 129.4 126 52.4
Phvul.007G242466 Phaseolus vulgaris HOM05D006242 ORTHO05D007936 4.3e-26 122.9 107 57.9
AUR62037908 Chenopodium quinoa HOM05D006242 ORTHO05D007936 4.7e-25 119.4 93 63.4
HPP92_011012 Vanilla planifolia HOM05D006242 ORTHO05D007936 1.3e-22 111.3 122 45.9
ATR1094G019 Amborella trichopoda HOM05D006242 ORTHO05D007936 4.9e-22 109.4 81 59.3
Cc09_g05720 Coffea canephora HOM05D006242 ORTHO05D007936 6.4e-22 109.0 95 62.1
BcaB02g09486 Brassica carinata HOM05D006242 ORTHO05D007936 8.3e-22 108.6 99 54.5
VMungo0720G2601 Vigna mungo HOM05D006242 ORTHO05D007936 1.1e-21 108.2 96 58.3
Cc09_g05640 Coffea canephora HOM05D006242 ORTHO05D007936 1.4e-21 107.8 68 73.5
MCO04G402 Micromonas commoda HOM05D006242 ORTHO05D007936 2.4e-21 107.1 171 34.5
TPR.G22035 Trifolium pratense HOM05D006242 ORTHO05D007936 2.4e-21 107.1 80 58.8
AUR62040161 Chenopodium quinoa HOM05D006242 ORTHO05D007936 2.5e-18 97.1 91 50.5
Cfa025972 Carpinus fangiana HOM05D006242 ORTHO05D007936 4.7e-17 92.8 254 26.8
CiPaw.09G216300 Carya illinoinensis HOM05D006242 ORTHO05D007936 4.7e-17 92.8 99 48.5
SHI14613 Sapria himalayana HOM05D000105 ORTHO05D000023 1.2e-15 88.2 55 65.5
Cc09_g05710 Coffea canephora HOM05D006242 ORTHO05D007936 1.2e-12 78.2 53 73.6
Os02g0173000 Oryza sativa ssp. japonica HOM05D006242 ORTHO05D007936 6.6e-11 72.4 53 60.4
Hund15669 Selenicereus undatus HOM05D000023 ORTHO05D000014 1.1e-10 71.6 79 50.6


User provided reference genes

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