Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g031770.4 Solanum lycopersicum HOM05D004920 ORTHO05D005998 5.8e-141 504.2 256 100.0
Sopen02g010080 Solanum pennellii HOM05D004920 ORTHO05D005998 5.5e-139 497.7 253 99.2
CAN.G1961.2 Capsicum annuum HOM05D004920 ORTHO05D005998 3.6e-122 441.8 253 87.4
Nitab4.5_0000138g0010 Nicotiana tabacum HOM05D004920 ORTHO05D005998 6.3e-119 431.0 264 84.5
Peaxi162Scf00016g00346 Petunia axillaris HOM05D004920 ORTHO05D005998 8.2e-119 430.6 254 86.2
Peaxi162Scf00367g00049 Petunia axillaris HOM05D004920 ORTHO05D005998 9.1e-118 427.2 253 86.2
Nitab4.5_0008952g0010 Nicotiana tabacum HOM05D004920 ORTHO05D005998 1.5e-104 383.3 351 61.5
Dinv40630 Davidia involucrata HOM05D004920 ORTHO05D005998 1.5e-99 366.7 253 71.9
Cc02_g14330 Coffea canephora HOM05D004920 ORTHO05D005998 1.6e-98 363.2 252 69.4
Oeu043091.1 Olea europaea HOM05D004920 ORTHO05D005998 1.0e-97 360.5 253 70.8
ClCG01G023480 Citrullus lanatus HOM05D004920 ORTHO05D005998 6.8e-97 357.8 247 72.9
CsaV3_6G050600 Cucumis sativus L. HOM05D004920 ORTHO05D005998 8.8e-97 357.5 229 76.4
Actinidia07625 Actinidia chinensis HOM05D004920 ORTHO05D005998 7.5e-96 354.4 253 67.6
Sed0019770 Sechium edule HOM05D004920 ORTHO05D005998 1.7e-95 353.2 226 76.1
Dinv36435 Davidia involucrata HOM05D004920 ORTHO05D005998 6.3e-95 351.3 241 71.4
Oeu025561.1 Olea europaea HOM05D004920 ORTHO05D005998 1.1e-94 350.5 253 68.4
MSTRG.14155 Avicennia marina HOM05D004920 ORTHO05D005998 1.4e-94 350.1 255 68.2
TAR624G0520 Trochodendron aralioides HOM05D004920 ORTHO05D005998 1.4e-94 350.1 252 69.4
CANSAT35G1037 Cannabis sativa HOM05D004920 ORTHO05D005998 7.0e-94 347.8 244 68.9
Ciclev10016425m.g Citrus clementina HOM05D004920 ORTHO05D005998 1.2e-93 347.1 252 68.3
CiPaw.09G066500 Carya illinoinensis HOM05D004920 ORTHO05D005998 3.5e-93 345.5 239 69.0
SGA_v2.0_scaffold16G07660 Striga asiatica HOM05D004920 ORTHO05D005998 3.5e-93 345.5 255 67.8
Thecc.06G177000 Theobroma cacao HOM05D004920 ORTHO05D005998 3.5e-93 345.5 258 65.1
TPR.G17014 Trifolium pratense HOM05D004920 ORTHO05D005998 4.5e-93 345.1 248 68.5
Lj4g0024893 Lotus japonicus HOM05D004920 ORTHO05D005998 1.3e-92 343.6 247 68.0
Cpa.g.sc80.25 Carica papaya HOM05D004920 ORTHO05D005998 1.7e-92 343.2 253 66.0
Haze_06318 Corylus avellana HOM05D004920 ORTHO05D005998 1.7e-92 343.2 252 65.9
Hma1.2p1_0155F.1_g068520 Hydrangea macrophylla HOM05D004920 ORTHO05D005998 3.8e-92 342.0 257 66.1
Cfa000557 Carpinus fangiana HOM05D004920 ORTHO05D005998 1.1e-91 340.5 252 65.9
VMungo1127G0753 Vigna mungo HOM05D004920 ORTHO05D005998 1.5e-91 340.1 202 78.7
Rhsim02G0138400 Rhododendron simsii HOM05D004920 ORTHO05D005998 3.3e-91 339.0 244 68.0
Ca_10660_v3 Cicer arietinum L. HOM05D004920 ORTHO05D005998 7.2e-91 337.8 247 68.8
Duzib235G1063 Durio zibethinus HOM05D004920 ORTHO05D005998 7.2e-91 337.8 255 64.7
Nn2g14559 Nelumbo nucifera HOM05D004920 ORTHO05D005998 2.1e-90 336.3 259 65.3
Gohir.D05G160000 Gossypium hirsutum HOM05D004920 ORTHO05D005998 2.8e-90 335.9 230 71.3
Phvul.001G005700 Phaseolus vulgaris HOM05D004920 ORTHO05D005998 3.6e-90 335.5 233 70.0
Aa31LG9G13860 Aethionema arabicum HOM05D004920 ORTHO05D005998 4.7e-90 335.1 247 65.2
Migut.M01075 Erythranthe guttata HOM05D004920 ORTHO05D005998 6.1e-90 334.7 253 65.6
Glyma.12G114600 Glycine max HOM05D004920 ORTHO05D005998 6.1e-90 334.7 251 65.7
PSO063G1259 Papaver somniferum HOM05D004920 ORTHO05D005998 8.0e-90 334.3 252 64.3
Potri.004G052200 Populus trichocarpa HOM05D004920 ORTHO05D005998 1.0e-89 334.0 236 67.8
Gohir.D01G045600 Gossypium hirsutum HOM05D004920 ORTHO05D005998 1.8e-89 333.2 229 70.7
BcaC02g07783 Brassica carinata HOM05D004920 ORTHO05D005998 2.3e-89 332.8 246 65.4
MD05G1306300 Malus domestica HOM05D004920 ORTHO05D005998 2.3e-89 332.8 241 66.4
Manes.17G051900 Manihot esculenta HOM05D004920 ORTHO05D005998 2.3e-89 332.8 249 68.3
Atru.chr10.1743 Acer truncatum HOM05D004920 ORTHO05D005998 4.0e-89 332.0 252 63.5
Ah.05g178940 Amaranthus hybridus HOM05D004920 ORTHO05D005998 5.2e-89 331.6 222 71.6
GSVIVG01021153001 Vitis vinifera HOM05D004920 ORTHO05D005998 1.5e-88 330.1 252 66.7
Eucgr.D00572 Eucalyptus grandis HOM05D004920 ORTHO05D005998 2.0e-88 329.7 226 69.0
Gohir.A05G157100 Gossypium hirsutum HOM05D004920 ORTHO05D005998 2.0e-88 329.7 256 65.6
Sabra04G0033000 Salix brachista HOM05D004920 ORTHO05D005998 2.6e-88 329.3 257 63.8
Medtr4g087955 Medicago truncatula HOM05D004920 ORTHO05D005998 3.4e-88 328.9 202 75.2
Aqoxy1G02218 Aquilegia oxysepala HOM05D004920 ORTHO05D005998 4.4e-88 328.6 232 68.5
MD10G1285300 Malus domestica HOM05D004920 ORTHO05D005998 5.7e-88 328.2 229 66.4
Sed0013972 Sechium edule HOM05D004920 ORTHO05D005998 5.7e-88 328.2 250 68.0
HanXRQChr15g0481321 Helianthus annuus HOM05D004920 ORTHO05D005998 7.5e-88 327.8 254 65.0
CDE02G3849 Ceratophyllum demersum HOM05D004920 ORTHO05D005998 9.8e-88 327.4 217 72.8
Gorai.002G065200 Gossypium raimondii HOM05D004920 ORTHO05D005998 9.8e-88 327.4 255 65.5
BcaB02g10610 Brassica carinata HOM05D004920 ORTHO05D005998 1.3e-87 327.0 246 64.2
TWI38G1999 Tripterygium wilfordii HOM05D004920 ORTHO05D005998 1.3e-87 327.0 232 66.4
Lsat_1_v5_gn_7_23761 Lactuca sativa HOM05D004920 ORTHO05D005998 2.2e-87 326.2 253 65.2
BolC4t27823H Brassica oleracea HOM05D004920 ORTHO05D005998 2.8e-87 325.9 246 63.8
Hund21192 Selenicereus undatus HOM05D004920 ORTHO05D005998 2.8e-87 325.9 217 69.6
Carub.0004s1568 Capsella rubella HOM05D004920 ORTHO05D005998 4.9e-87 325.1 247 63.2
CARHR128130 Cardamine hirsuta HOM05D004920 ORTHO05D005998 6.3e-87 324.7 253 62.1
AL4G29930 Arabidopsis lyrata HOM05D004920 ORTHO05D005998 8.3e-87 324.3 217 67.7
Thhalv10017133m.g Eutrema salsugineum HOM05D004920 ORTHO05D005998 8.3e-87 324.3 249 63.5
FvH4_7g02080 Fragaria vesca HOM05D004920 ORTHO05D005998 8.3e-87 324.3 241 64.3
FAN06G4868 Fragaria x ananassa HOM05D004920 ORTHO05D005998 8.3e-87 324.3 241 64.3
PGR004G0415 Punica granatum HOM05D004920 ORTHO05D005998 1.4e-86 323.6 204 73.5
PGR046G0004 Punica granatum HOM05D004920 ORTHO05D005998 1.4e-86 323.6 204 73.5
ECA236G4389 Erigeron canadensis HOM05D004920 ORTHO05D005998 1.8e-86 323.2 225 69.3
PSO541G3866 Papaver somniferum HOM05D004920 ORTHO05D005998 1.8e-86 323.2 257 61.9
AT2G34050 Arabidopsis thaliana HOM05D004920 ORTHO05D005998 2.4e-86 322.8 248 62.9
FAN03G1929 Fragaria x ananassa HOM05D004920 ORTHO05D005998 2.4e-86 322.8 241 63.5
RcHm_v2.0_Chr5g0009901 Rosa chinensis HOM05D004920 ORTHO05D005998 2.4e-86 322.8 241 63.9
A05p11610 Brassica napus HOM05D004920 ORTHO05D005998 3.1e-86 322.4 245 63.7
C04p15060 Brassica napus HOM05D004920 ORTHO05D005998 3.1e-86 322.4 247 63.2
BraA05t20108Z Brassica rapa HOM05D004920 ORTHO05D005998 3.1e-86 322.4 245 63.7
FvH4_3g08250 Fragaria vesca HOM05D004920 ORTHO05D005998 3.1e-86 322.4 241 63.1
FAN11G1044 Fragaria x ananassa HOM05D004920 ORTHO05D005998 3.1e-86 322.4 241 63.1
FAN16G1146 Fragaria x ananassa HOM05D004920 ORTHO05D005998 3.1e-86 322.4 241 63.1
MBI07_g06434_MAGBIO Magnolia biondii HOM05D004920 ORTHO05D005998 3.1e-86 322.4 257 63.8
Sp4g16400 Schrenkiella parvula HOM05D004920 ORTHO05D005998 3.1e-86 322.4 247 63.2
BolC4t23082H Brassica oleracea HOM05D004920 ORTHO05D005998 7.0e-86 321.2 247 62.8
AUR62014920 Chenopodium quinoa HOM05D004920 ORTHO05D005998 7.0e-86 321.2 224 69.2
PSO675G0526 Papaver somniferum HOM05D004920 ORTHO05D005998 7.0e-86 321.2 257 61.9
A04p26140 Brassica napus HOM05D004920 ORTHO05D005998 9.2e-86 320.9 243 62.6
AUR62031127 Chenopodium quinoa HOM05D004920 ORTHO05D005998 1.2e-85 320.5 221 69.7
Rhsim06G0035100 Rhododendron simsii HOM05D004920 ORTHO05D005998 1.2e-85 320.5 258 63.2
BcaB06g28727 Brassica carinata HOM05D004920 ORTHO05D005998 1.6e-85 320.1 252 61.5
C04p63520 Brassica napus HOM05D004920 ORTHO05D005998 1.6e-85 320.1 243 63.0
BraA04t18117Z Brassica rapa HOM05D004920 ORTHO05D005998 1.6e-85 320.1 243 63.0
Lalb_Chr07g0189681 Lupinus albus HOM05D004920 ORTHO05D005998 2.0e-85 319.7 263 62.7
SGA_v2.0_scaffold341G49353 Striga asiatica HOM05D004920 ORTHO05D005998 2.7e-85 319.3 247 65.6
Sc17g0005830 Simmondsia chinensis HOM05D004920 ORTHO05D005998 7.8e-85 317.8 253 62.5
DCAR_007975 Daucus carota HOM05D004920 ORTHO05D005998 1.0e-84 317.4 202 72.8
TPR.G16259 Trifolium pratense HOM05D004920 ORTHO05D005998 1.0e-84 317.4 247 61.5
THA.LOC104812631 Tarenaya hassleriana HOM05D004920 ORTHO05D005998 1.3e-84 317.0 250 62.4
EL10Ac1g01008 Beta vulgaris HOM05D004920 ORTHO05D005998 1.7e-84 316.6 203 73.4
FAN25G0865 Fragaria x ananassa HOM05D004920 ORTHO05D005998 8.3e-79 297.7 288 52.4
MELO3C007238.2 Cucumis melo HOM05D004920 ORTHO05D005998 1.1e-78 297.4 229 67.2
Lj7P478G59 Lonicera japonica HOM05D004920 ORTHO05D005998 1.6e-77 293.5 172 78.5
HPP92_018237 Vanilla planifolia HOM05D004920 ORTHO05D005998 3.5e-77 292.4 203 66.5
Gorai.009G165000 Gossypium raimondii HOM05D004920 ORTHO05D005998 3.9e-76 288.9 230 64.3
ATR0712G057 Amborella trichopoda HOM05D004920 ORTHO05D005998 7.3e-75 284.6 203 65.5
THA.LOC104814688 Tarenaya hassleriana HOM05D004920 ORTHO05D005998 4.6e-69 265.4 188 67.6
Glyma.06G291400 Glycine max HOM05D004920 ORTHO05D005998 1.1e-67 260.8 148 81.8
CAN.G160.23 Capsicum annuum HOM05D004920 ORTHO05D005998 9.5e-67 257.7 151 86.1
vmacro15953 Vaccinium macrocarpon HOM05D004920 ORTHO05D005998 6.2e-66 255.0 319 46.4
QL04p069154 Quercus lobata HOM05D004920 ORTHO05D005998 2.4e-62 243.0 136 82.4
BcaB06g28732 Brassica carinata HOM05D004920 ORTHO05D005998 1.0e-60 237.7 223 53.4
FAN21G0445 Fragaria x ananassa HOM05D004920 ORTHO05D005998 1.2e-58 230.7 279 46.2
SEGI_15656 Sequoiadendron giganteum HOM05D004920 ORTHO05D005998 4.0e-57 225.7 146 74.0
AagrBONN_evm.TU.Sc2ySwM_228.2942 Anthoceros agrestis HOM05D004920 ORTHO05D005998 4.9e-55 218.8 195 52.8
Pp3c14_19140 Physcomitrium patens HOM05D004920 ORTHO05D005998 6.4e-55 218.4 204 52.0
Mapoly0023s0159 Marchantia polymorpha HOM05D004920 ORTHO05D005998 9.2e-54 214.5 182 56.0
DCAR_004027 Daucus carota HOM05D004920 ORTHO05D005998 7.8e-53 211.5 238 48.7
Glyma.04G173800 Glycine max HOM05D004920 ORTHO05D005998 1.7e-52 210.3 119 83.2
SMO196G0025 Selaginella moellendorffii HOM05D004920 ORTHO05D005998 7.6e-48 194.9 190 47.9
BcaC01g05809 Brassica carinata HOM05D004920 ORTHO05D005998 4.2e-46 189.1 154 58.4
BolC3t14602H Brassica oleracea HOM05D004920 ORTHO05D005998 4.3e-43 179.1 169 53.3
COL.COLO4_31383 Corchorus olitorius HOM05D004920 ORTHO05D005998 7.3e-43 178.3 106 78.3
TAR626G0293 Trochodendron aralioides HOM05D004920 ORTHO05D005998 8.1e-42 174.9 99 82.8
SHI18442 Sapria himalayana HOM05D004920 ORTHO05D005998 4.0e-41 172.6 243 40.7
Ca_26043_v3 Cicer arietinum L. HOM05D004920 ORTHO05D005998 9.0e-41 171.4 99 79.8
Prupe.4G056300 Prunus persica HOM05D004920 ORTHO05D005998 1.1e-38 164.5 136 58.1
Cpa.g.sc80.22 Carica papaya HOM05D004920 ORTHO05D005998 1.4e-38 164.1 99 76.8
unitig_60.g25415 Utricularia gibba HOM05D004920 ORTHO05D005998 6.0e-37 158.7 97 77.3
Cpa.g.sc12.156 Carica papaya HOM05D004920 ORTHO05D005998 1.5e-32 144.1 87 75.9
Zm00001eb237640 Zea mays HOM05D004920 ORTHO05D005998 3.8e-31 139.4 103 66.0
Os02g0312700 Oryza sativa ssp. japonica HOM05D004920 ORTHO05D005998 1.9e-27 127.1 84 66.7
BcaB01g03906 Brassica carinata HOM05D004920 ORTHO05D005998 2.4e-25 120.2 183 39.9
Cre10.g437050 Chlamydomonas reinhardtii HOM05D004920 ORTHO05D005998 2.4e-25 120.2 184 35.9
BcaC04g19340 Brassica carinata HOM05D001872 ORTHO05D005998 1.3e-23 114.4 69 73.9
BolC1t01767H Brassica oleracea HOM05D001872 ORTHO05D005998 1.7e-23 114.0 92 60.9
CBR_g54210 Chara braunii HOM05D004920 ORTHO05D005998 1.7e-23 114.0 101 50.5
BcaC05g29287 Brassica carinata HOM05D001911 ORTHO05D001951 2.9e-23 113.2 89 61.8
BcaNung00861 Brassica carinata HOM05D001872 ORTHO05D001859 6.5e-23 112.1 69 72.5
BolC7t45617H Brassica oleracea HOM05D001872 ORTHO05D001859 6.5e-23 112.1 69 72.5
C01p18450 Brassica napus HOM05D001872 ORTHO05D001859 1.1e-22 111.3 88 61.4
Psat4g001400 Pisum sativum HOM05D004920 ORTHO05D005998 5.5e-22 109.0 128 47.7
Medtr1g097870 Medicago truncatula HOM05D004920 ORTHO05D005998 4.6e-21 105.9 102 54.9
PRCOL_00005737 Prasinoderma coloniale HOM05D004920 ORTHO05D005998 3.1e-17 93.2 177 30.5
QL04p069158 Quercus lobata HOM05D004920 ORTHO05D005998 1.7e-15 87.4 105 46.7
Cpa.g.sc80.20 Carica papaya HOM05D009365 ORTHO05D000952 1.8e-12 77.4 48 72.9
A02p38170 Brassica napus HOM05D011482 ORTHO05D001953 3.0e-12 76.6 44 75.0
BraA02t08794Z Brassica rapa HOM05D001897 ORTHO05D001953 3.0e-12 76.6 44 75.0
BcaC01g03531 Brassica carinata HOM05D004920 ORTHO05D094784 7.4e-11 72.0 117 38.5
DCAR_032321 Daucus carota HOM05D004920 ORTHO05D005998 9.7e-11 71.6 94 42.6
Oeu062327.1 Olea europaea HOM05D004920 ORTHO05D005998 4.8e-10 69.3 42 78.6
Duzib192G0917 Durio zibethinus HOM05D004920 ORTHO05D005998 1.8e-09 67.4 54 55.6
BolC5t34235H Brassica oleracea HOM05D001872 ORTHO05D001859 2.4e-09 67.0 56 58.9
BcaC01g04260 Brassica carinata HOM05D004920 ORTHO05D010632 5.3e-09 65.9 55 56.4
C03p43360 Brassica napus HOM05D004920 ORTHO05D010632 1.5e-08 64.3 46 67.4
BolC3t16607H Brassica oleracea HOM05D008686 ORTHO05D010632 3.4e-08 63.2 35 77.1
C03p13910 Brassica napus HOM05D004920 ORTHO05D005998 5.9e-08 62.4 40 67.5
Oeu019523.1 Olea europaea HOM05D004920 ORTHO05D005998 1.7e-07 60.8 40 67.5
SEGI_14350 Sequoiadendron giganteum HOM05D004920 ORTHO05D005998 2.2e-07 60.5 54 51.9


User provided reference genes

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