Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g030310.1 Solanum lycopersicum HOM05D000620 ORTHO05D000537 6.3e-103 377.5 197 100.0
Nitab4.5_0001312g0010 Nicotiana tabacum HOM05D000620 ORTHO05D000537 4.2e-14 82.4 72 63.9
Nitab4.5_0000265g0020 Nicotiana tabacum HOM05D000620 ORTHO05D000537 5.5e-14 82.0 72 62.5
Peaxi162Scf00267g00104 Petunia axillaris HOM05D000620 ORTHO05D000537 3.0e-12 76.3 72 59.7
Nitab4.5_0005250g0010 Nicotiana tabacum HOM05D000620 ORTHO05D000537 4.8e-10 68.9 193 33.7
PGSC0003DMG400040738 Solanum tuberosum HOM05D000620 ORTHO05D000537 1.4e-09 67.4 45 80.0
GSVIVG01013615001 Vitis vinifera HOM05D000620 ORTHO05D000537 1.4e-09 67.4 67 55.2
Solyc02g069470.4 Solanum lycopersicum HOM05D000620 ORTHO05D000537 1.6e-08 63.9 65 56.9
Sopen02g018610 Solanum pennellii HOM05D000620 ORTHO05D000537 1.6e-08 63.9 65 56.9
PGSC0003DMG400021143 Solanum tuberosum HOM05D000620 ORTHO05D000537 1.6e-08 63.9 65 56.9
Nitab4.5_0001219g0160 Nicotiana tabacum HOM05D000620 ORTHO05D000537 2.0e-08 63.5 65 56.9
Nitab4.5_0008761g0010 Nicotiana tabacum HOM05D000620 ORTHO05D000537 2.0e-08 63.5 60 60.0
Oeu063140.2 Olea europaea HOM05D000620 ORTHO05D000537 2.0e-08 63.5 68 55.9
Lj1C1140T4 Lonicera japonica HOM05D000620 ORTHO05D000537 2.6e-08 63.2 69 52.2
MD10G1239000 Malus domestica HOM05D000620 ORTHO05D000537 3.5e-08 62.8 97 43.3
Dinv35486 Davidia involucrata HOM05D000620 ORTHO05D000537 4.5e-08 62.4 70 50.0
Peaxi162Scf00195g00027 Petunia axillaris HOM05D000620 ORTHO05D000537 4.5e-08 62.4 111 38.7
ATR0763G013 Amborella trichopoda HOM05D000620 ORTHO05D000537 5.9e-08 62.0 72 45.8
PGR044G2673 Punica granatum HOM05D000620 ORTHO05D000537 7.7e-08 61.6 71 45.1
VMungo1127G0220 Vigna mungo HOM05D000620 ORTHO05D000537 7.7e-08 61.6 122 33.6
CAN.G675.18 Capsicum annuum HOM05D000620 ORTHO05D000537 1.0e-07 61.2 106 39.6
Cfa000746 Carpinus fangiana HOM05D000620 ORTHO05D000537 1.0e-07 61.2 65 50.8
Migut.F01903 Erythranthe guttata HOM05D000620 ORTHO05D000537 1.0e-07 61.2 70 48.6
FAN16G3324 Fragaria x ananassa HOM05D000620 ORTHO05D000537 1.0e-07 61.2 69 47.8
SEGI_01276 Sequoiadendron giganteum HOM05D000620 ORTHO05D000537 1.0e-07 61.2 71 45.1
SEGI_36495 Sequoiadendron giganteum HOM05D000620 ORTHO05D000537 1.0e-07 61.2 71 45.1
Glyma.11G197001 Glycine max HOM05D000620 ORTHO05D000537 1.3e-07 60.8 122 32.0
Thecc.06G135200 Theobroma cacao HOM05D000620 ORTHO05D000537 1.3e-07 60.8 69 49.3
Lj3g0026111 Lotus japonicus HOM05D000620 ORTHO05D000537 1.7e-07 60.5 122 31.1
Aqoxy1G01548 Aquilegia oxysepala HOM05D000620 ORTHO05D000537 2.2e-07 60.1 74 43.2
Ca_19288_v3 Cicer arietinum L. HOM05D000620 ORTHO05D000537 2.2e-07 60.1 123 31.7
FvH4_3g11750 Fragaria vesca HOM05D000620 ORTHO05D000537 2.2e-07 60.1 67 47.8
FAN25G1999 Fragaria x ananassa HOM05D000620 ORTHO05D000537 2.9e-07 59.7 67 47.8
MBI01_g45075_MAGBIO Magnolia biondii HOM05D000620 ORTHO05D000537 2.9e-07 59.7 70 45.7
Potri.003G148400 Populus trichocarpa HOM05D000620 ORTHO05D000537 2.9e-07 59.7 68 48.5
Prupe.4G105400 Prunus persica HOM05D000620 ORTHO05D000537 2.9e-07 59.7 71 45.1
Sc06g0010340 Simmondsia chinensis HOM05D000620 ORTHO05D000537 2.9e-07 59.7 75 41.3
TPR.G1959 Trifolium pratense HOM05D000620 ORTHO05D000537 2.9e-07 59.7 81 42.0
Ciclev10014457m.g Citrus clementina HOM05D000620 ORTHO05D000537 3.8e-07 59.3 110 35.5
Duzib192G0104 Durio zibethinus HOM05D000620 ORTHO05D000537 3.8e-07 59.3 69 47.8
Duzib235G1516 Durio zibethinus HOM05D000620 ORTHO05D000537 3.8e-07 59.3 69 47.8
Sabra03G0108100 Salix brachista HOM05D000620 ORTHO05D000537 3.8e-07 59.3 68 50.0
TWI09G0115 Tripterygium wilfordii HOM05D000620 ORTHO05D000537 3.8e-07 59.3 67 47.8
Atru.chr12.798 Acer truncatum HOM05D000620 ORTHO05D000537 5.0e-07 58.9 70 44.3
arahy.Tifrunner.gnm1.ann1.B47L6X Arachis hypogaea HOM05D000620 ORTHO05D000537 5.0e-07 58.9 113 34.5
arahy.Tifrunner.gnm1.ann1.TJ4WR0 Arachis hypogaea HOM05D000620 ORTHO05D000537 5.0e-07 58.9 113 34.5
FvH4_3g11693 Fragaria vesca HOM05D000620 ORTHO05D000537 5.0e-07 58.9 69 47.8
FAN21G2332 Fragaria x ananassa HOM05D000620 ORTHO05D000537 5.0e-07 58.9 69 47.8
Mapoly0060s0061 Marchantia polymorpha HOM05D000620 ORTHO05D000537 5.0e-07 58.9 71 43.7
RcHm_v2.0_Chr5g0019111 Rosa chinensis HOM05D000620 ORTHO05D000537 5.0e-07 58.9 69 44.9
Sp1g06690 Schrenkiella parvula HOM05D000620 ORTHO05D000537 5.0e-07 58.9 72 45.8
AL1G18390 Arabidopsis lyrata HOM05D000620 ORTHO05D000537 6.5e-07 58.5 67 50.7
CDE04G1536 Ceratophyllum demersum HOM05D000620 ORTHO05D000537 6.5e-07 58.5 72 43.1
DCAR_015525 Daucus carota HOM05D000122 ORTHO05D000537 6.5e-07 58.5 118 35.6
Lalb_Chr22g0350301 Lupinus albus HOM05D000620 ORTHO05D000537 6.5e-07 58.5 113 31.9
RcHm_v2.0_Chr5g0018991 Rosa chinensis HOM05D000620 ORTHO05D000537 6.5e-07 58.5 69 46.4
Sed0004175 Sechium edule HOM05D000620 ORTHO05D000537 6.5e-07 58.5 70 42.9
DCAR_018794 Daucus carota HOM05D000620 ORTHO05D000537 8.5e-07 58.2 70 42.9
Migut.F01906 Erythranthe guttata HOM05D000620 ORTHO05D000537 8.5e-07 58.2 70 48.6
Glyma.12G077333 Glycine max HOM05D000620 ORTHO05D000537 8.5e-07 58.2 122 32.0
Phvul.011G081250 Phaseolus vulgaris HOM05D000620 ORTHO05D000537 8.5e-07 58.2 122 30.3
Rhsim09G0151100 Rhododendron simsii HOM05D000620 ORTHO05D000537 8.5e-07 58.2 81 39.5
Sabra08G0026100 Salix brachista HOM05D000620 ORTHO05D000537 8.5e-07 58.2 70 42.9
TAR626G1666 Trochodendron aralioides HOM05D000620 ORTHO05D000537 8.5e-07 58.2 68 45.6
Zm00001eb426300 Zea mays HOM05D000620 ORTHO05D000537 8.5e-07 58.2 78 44.9
HanXRQChr09g0259281 Helianthus annuus HOM05D000620 ORTHO05D000537 1.1e-06 57.8 71 45.1
Oeu059828.1 Olea europaea HOM05D000620 ORTHO05D000537 1.1e-06 57.8 70 47.1
TWI09G1605 Tripterygium wilfordii HOM05D000620 ORTHO05D000537 1.1e-06 57.8 77 41.6
COL.COLO4_30924 Corchorus olitorius HOM05D000620 ORTHO05D000537 1.5e-06 57.4 69 47.8
Duzib114G0728 Durio zibethinus HOM05D000620 ORTHO05D000537 1.5e-06 57.4 70 41.4
Migut.F01902 Erythranthe guttata HOM05D000620 ORTHO05D000537 1.5e-06 57.4 75 44.0
Migut.F01904 Erythranthe guttata HOM05D000620 ORTHO05D000537 1.5e-06 57.4 75 44.0
Gohir.A05G104900 Gossypium hirsutum HOM05D000620 ORTHO05D000537 1.5e-06 57.4 72 41.7
RcHm_v2.0_Chr5g0019151 Rosa chinensis HOM05D000620 ORTHO05D000537 1.5e-06 57.4 68 47.1
SEGI_09902 Sequoiadendron giganteum HOM05D000620 ORTHO05D000537 1.5e-06 57.4 74 40.5
SGA_v2.0_scaffold104G30098 Striga asiatica HOM05D000620 ORTHO05D000537 1.5e-06 57.4 70 45.7
SGA_v2.0_scaffold67G22587 Striga asiatica HOM05D000620 ORTHO05D000537 1.5e-06 57.4 70 45.7
TPR.G6128 Trifolium pratense HOM05D000620 ORTHO05D000537 1.5e-06 57.4 72 41.7
Cpa.g.sc53.90 Carica papaya HOM05D000620 ORTHO05D000537 1.9e-06 57.0 70 42.9
Gohir.D13G022400 Gossypium hirsutum HOM05D000620 ORTHO05D000537 1.9e-06 57.0 72 40.3
Manes.07G098900 Manihot esculenta HOM05D000620 ORTHO05D000537 1.9e-06 57.0 70 41.4
Medtr4g058700 Medicago truncatula HOM05D000620 ORTHO05D000537 1.9e-06 57.0 122 31.1
Sed0009832 Sechium edule HOM05D000620 ORTHO05D000537 1.9e-06 57.0 70 41.4
Thecc.10G076100 Theobroma cacao HOM05D000620 ORTHO05D000537 1.9e-06 57.0 70 41.4
ClCG08G007580 Citrullus lanatus HOM05D000620 ORTHO05D000537 2.5e-06 56.6 70 41.4
MELO3C019807.2 Cucumis melo HOM05D000620 ORTHO05D000537 2.5e-06 56.6 70 41.4
CsaV3_6G014030 Cucumis sativus L. HOM05D000620 ORTHO05D000537 2.5e-06 56.6 74 37.8
Duzib128G0899 Durio zibethinus HOM05D000620 ORTHO05D000537 2.5e-06 56.6 70 41.4
FvH4_3g11772 Fragaria vesca HOM05D000620 ORTHO05D000537 2.5e-06 56.6 69 44.9
FAN21G3215 Fragaria x ananassa HOM05D000620 ORTHO05D000537 2.5e-06 56.6 69 44.9
Manes.10G047300 Manihot esculenta HOM05D000620 ORTHO05D000537 2.5e-06 56.6 70 41.4
Medtr1g094830 Medicago truncatula HOM05D000620 ORTHO05D000537 2.5e-06 56.6 81 40.7
Psat6g182720 Pisum sativum HOM05D000620 ORTHO05D000537 2.5e-06 56.6 81 40.7
Potri.008G038450 Populus trichocarpa HOM05D000620 ORTHO05D000537 2.5e-06 56.6 70 41.4
Potri.010G223766 Populus trichocarpa HOM05D000620 ORTHO05D000537 2.5e-06 56.6 70 42.9
Sabra10G0173200 Salix brachista HOM05D000620 ORTHO05D000537 2.5e-06 56.6 70 42.9
Actinidia32444 Actinidia chinensis HOM05D000620 ORTHO05D000537 3.2e-06 56.2 71 39.4
Actinidia38858 Actinidia chinensis HOM05D000620 ORTHO05D000537 3.2e-06 56.2 71 39.4
CSS0017198 Camellia sinensis var. sinensis HOM05D000620 ORTHO05D000537 3.2e-06 56.2 70 40.0
Cfa001657 Carpinus fangiana HOM05D000620 ORTHO05D000537 3.2e-06 56.2 59 47.5
AUR62022781 Chenopodium quinoa HOM05D000620 ORTHO05D000537 3.2e-06 56.2 70 42.9
AUR62043341 Chenopodium quinoa HOM05D000620 ORTHO05D000537 3.2e-06 56.2 70 42.9
ClCG01G013530 Citrullus lanatus HOM05D000620 ORTHO05D000537 3.2e-06 56.2 71 39.4
ClCG02G021280 Citrullus lanatus HOM05D000620 ORTHO05D000537 3.2e-06 56.2 72 40.3
CsaV3_6G036530 Cucumis sativus L. HOM05D000620 ORTHO05D000537 3.2e-06 56.2 70 41.4
Dinv31312 Davidia involucrata HOM05D000620 ORTHO05D000537 3.2e-06 56.2 70 41.4
FvH4_3g11692 Fragaria vesca HOM05D000620 ORTHO05D000537 3.2e-06 56.2 69 43.5
Gohir.A13G021800 Gossypium hirsutum HOM05D000620 ORTHO05D000537 3.2e-06 56.2 70 41.4
Manes.04G018200 Manihot esculenta HOM05D000620 ORTHO05D000537 3.2e-06 56.2 59 47.5
Oeu031338.1 Olea europaea HOM05D000620 ORTHO05D000537 3.2e-06 56.2 70 41.4
RcHm_v2.0_Chr5g0019161 Rosa chinensis HOM05D000620 ORTHO05D000537 3.2e-06 56.2 69 44.9
Sc09g0006210 Simmondsia chinensis HOM05D000620 ORTHO05D000537 3.2e-06 56.2 66 45.5
Solyc05g056140.4 Solanum lycopersicum HOM05D000620 ORTHO05D000537 3.2e-06 56.2 71 42.3
Sopen05g034550 Solanum pennellii HOM05D000620 ORTHO05D000537 3.2e-06 56.2 71 42.3
TWI15G0665 Tripterygium wilfordii HOM05D000620 ORTHO05D000537 3.2e-06 56.2 68 42.6
CSS0002591 Camellia sinensis var. sinensis HOM05D000620 ORTHO05D000537 4.2e-06 55.8 67 43.3
CAN.G694.89 Capsicum annuum HOM05D000620 ORTHO05D000537 4.2e-06 55.8 71 42.3
COL.COLO4_28413 Corchorus olitorius HOM05D000620 ORTHO05D000537 4.2e-06 55.8 70 41.4
FvH4_3g11740 Fragaria vesca HOM05D000620 ORTHO05D000537 4.2e-06 55.8 69 46.4
Gohir.A10G047200 Gossypium hirsutum HOM05D000620 ORTHO05D000537 4.2e-06 55.8 69 46.4
Gohir.D10G048500 Gossypium hirsutum HOM05D000620 ORTHO05D000537 4.2e-06 55.8 69 46.4
Gorai.011G051600 Gossypium raimondii HOM05D000620 ORTHO05D000537 4.2e-06 55.8 69 46.4
Lj5g0019483 Lotus japonicus HOM05D000620 ORTHO05D000537 4.2e-06 55.8 70 41.4
Nitab4.5_0004212g0040 Nicotiana tabacum HOM05D000620 ORTHO05D000537 4.2e-06 55.8 71 42.3
Peaxi162Scf00858g00315 Petunia axillaris HOM05D000620 ORTHO05D000537 4.2e-06 55.8 71 42.3
Phvul.007G095950 Phaseolus vulgaris HOM05D000620 ORTHO05D000537 4.2e-06 55.8 70 41.4
PGSC0003DMG400023339 Solanum tuberosum HOM05D000620 ORTHO05D000537 4.2e-06 55.8 71 42.3
TWI38G1664 Tripterygium wilfordii HOM05D000620 ORTHO05D000537 4.2e-06 55.8 68 41.2
EL10Ac6g15428 Beta vulgaris HOM05D000620 ORTHO05D000537 5.5e-06 55.5 71 42.3
BcaB02g06691 Brassica carinata HOM05D000421 ORTHO05D000537 5.5e-06 55.5 65 47.7
AUR62029413 Chenopodium quinoa HOM05D000620 ORTHO05D000537 5.5e-06 55.5 69 43.5
Cc02_g11250 Coffea canephora HOM05D000620 ORTHO05D000537 5.5e-06 55.5 81 39.5
MELO3C004903.2 Cucumis melo HOM05D000620 ORTHO05D000537 5.5e-06 55.5 118 31.4
Migut.F01899 Erythranthe guttata HOM05D000620 ORTHO05D000537 5.5e-06 55.5 76 42.1
Migut.F01901 Erythranthe guttata HOM05D000620 ORTHO05D000537 5.5e-06 55.5 75 42.7
Gohir.A10G204900 Gossypium hirsutum HOM05D000620 ORTHO05D000537 5.5e-06 55.5 71 40.8
Lalb_Chr24g0394741 Lupinus albus HOM05D000620 ORTHO05D000537 5.5e-06 55.5 70 41.4
Os02g0619600 Oryza sativa ssp. japonica HOM05D000620 ORTHO05D000537 5.5e-06 55.5 75 40.0
PSO063G5618 Papaver somniferum HOM05D000620 ORTHO05D000537 5.5e-06 55.5 71 40.8
PSO170G5477 Papaver somniferum HOM05D000620 ORTHO05D000537 5.5e-06 55.5 71 40.8
Potri.001G082150 Populus trichocarpa HOM05D000620 ORTHO05D000537 5.5e-06 55.5 68 45.6
QL08p055460 Quercus lobata HOM05D000620 ORTHO05D000537 5.5e-06 55.5 70 41.4
RcHm_v2.0_Chr5g0019201 Rosa chinensis HOM05D000620 ORTHO05D000537 5.5e-06 55.5 93 37.6
Hund01511 Selenicereus undatus HOM05D000620 ORTHO05D000537 5.5e-06 55.5 79 40.5
A05p07230 Brassica napus HOM05D000620 ORTHO05D000537 7.2e-06 55.1 80 40.0
CANSAT56G2654 Cannabis sativa HOM05D000620 ORTHO05D000537 7.2e-06 55.1 68 42.6
CiPaw.14G085000 Carya illinoinensis HOM05D000620 ORTHO05D000537 7.2e-06 55.1 71 39.4
Dinv32721 Davidia involucrata HOM05D000620 ORTHO05D000537 7.2e-06 55.1 85 38.8
Dinv36426 Davidia involucrata HOM05D000620 ORTHO05D000537 7.2e-06 55.1 60 45.0
Migut.F01900 Erythranthe guttata HOM05D000620 ORTHO05D000537 7.2e-06 55.1 73 43.8
Migut.F01905 Erythranthe guttata HOM05D000620 ORTHO05D000537 7.2e-06 55.1 72 44.4
FvH4_3g11771 Fragaria vesca HOM05D000620 ORTHO05D000537 7.2e-06 55.1 69 43.5
FvH4_7g19190 Fragaria vesca HOM05D000620 ORTHO05D000537 7.2e-06 55.1 70 41.4
FAN03G2001 Fragaria x ananassa HOM05D000620 ORTHO05D000537 7.2e-06 55.1 70 41.4
FAN06G3165 Fragaria x ananassa HOM05D000620 ORTHO05D000537 7.2e-06 55.1 70 41.4
FAN16G0581 Fragaria x ananassa HOM05D000620 ORTHO05D000537 7.2e-06 55.1 69 43.5
Lalb_Chr01g0004431 Lupinus albus HOM05D000620 ORTHO05D000537 7.2e-06 55.1 71 39.4
Lalb_Chr03g0027501 Lupinus albus HOM05D000620 ORTHO05D000537 7.2e-06 55.1 121 31.4
Lalb_Chr14g0374561 Lupinus albus HOM05D000620 ORTHO05D000537 7.2e-06 55.1 70 38.6
Nitab4.5_0000582g0240 Nicotiana tabacum HOM05D000620 ORTHO05D000537 7.2e-06 55.1 71 42.3
Potri.009G010350 Populus trichocarpa HOM05D000620 ORTHO05D000537 7.2e-06 55.1 70 41.4
RcHm_v2.0_Chr1g0363051 Rosa chinensis HOM05D000620 ORTHO05D000537 7.2e-06 55.1 70 41.4
Sabra01G0059000 Salix brachista HOM05D000620 ORTHO05D000537 7.2e-06 55.1 68 45.6
TWI63G0715 Tripterygium wilfordii HOM05D000620 ORTHO05D000537 7.2e-06 55.1 68 42.6
TWI75G0723 Tripterygium wilfordii HOM05D000620 ORTHO05D000537 7.2e-06 55.1 67 44.8
vmacro04865 Vaccinium macrocarpon HOM05D000620 ORTHO05D000537 7.2e-06 55.1 70 42.9
VMungo0720G1139 Vigna mungo HOM05D000620 ORTHO05D000537 7.2e-06 55.1 81 40.7
MSTRG.27475 Avicennia marina HOM05D000620 ORTHO05D000537 9.4e-06 54.7 70 41.4
BraA05t19687Z Brassica rapa HOM05D000620 ORTHO05D000537 9.4e-06 54.7 80 38.8
Cfa011297 Carpinus fangiana HOM05D000620 ORTHO05D000537 9.4e-06 54.7 71 39.4
CiPaw.01G271500 Carya illinoinensis HOM05D000620 ORTHO05D000537 9.4e-06 54.7 59 45.8
Ca_10560_v3 Cicer arietinum L. HOM05D000620 ORTHO05D000537 9.4e-06 54.7 71 42.3
CsaV3_1G013930 Cucumis sativus L. HOM05D000620 ORTHO05D000537 9.4e-06 54.7 118 30.5
FAN01G2679 Fragaria x ananassa HOM05D000620 ORTHO05D000537 9.4e-06 54.7 70 41.4
FAN10G2169 Fragaria x ananassa HOM05D000620 ORTHO05D000537 9.4e-06 54.7 70 41.4
FAN10G3653 Fragaria x ananassa HOM05D000620 ORTHO05D000537 9.4e-06 54.7 70 41.4
FAN16G2208 Fragaria x ananassa HOM05D000620 ORTHO05D000537 9.4e-06 54.7 96 38.5
MD01G1107300 Malus domestica HOM05D000620 ORTHO05D000537 9.4e-06 54.7 67 43.3
MD07G1173100 Malus domestica HOM05D000620 ORTHO05D000537 9.4e-06 54.7 67 43.3
PSO210G4590 Papaver somniferum HOM05D000620 ORTHO05D000537 9.4e-06 54.7 80 38.8
Rhsim03G0119200 Rhododendron simsii HOM05D000620 ORTHO05D000537 9.4e-06 54.7 142 28.2
SMO199G0026 Selaginella moellendorffii HOM05D000620 ORTHO05D000537 9.4e-06 54.7 87 37.9
Zm00001eb046280 Zea mays HOM05D000620 ORTHO05D000537 9.4e-06 54.7 78 42.3


User provided reference genes

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