Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g030200.1 Solanum lycopersicum HOM05D000138 ORTHO05D007692 5.4e-26 120.2 58 100.0
Sopen02g009530 Solanum pennellii HOM05D000138 ORTHO05D007692 6.2e-22 106.7 56 91.1
CAN.G306.10 Capsicum annuum HOM05D000138 ORTHO05D007692 2.0e-20 101.7 51 96.1
Nitab4.5_0003301g0010 Nicotiana tabacum HOM05D000138 ORTHO05D007692 7.5e-20 99.8 56 87.5
Nitab4.5_0000265g0050 Nicotiana tabacum HOM05D000138 ORTHO05D007692 6.4e-19 96.7 56 85.7
MSTRG.7574 Avicennia marina HOM05D000138 ORTHO05D007692 2.0e-17 91.7 53 83.0
COL.COLO4_05666 Corchorus olitorius HOM05D000138 ORTHO05D007692 2.0e-17 91.7 53 84.9
Duzib106G1979 Durio zibethinus HOM05D000138 ORTHO05D007692 2.0e-17 91.7 53 84.9
Migut.M01946 Erythranthe guttata HOM05D000138 ORTHO05D007692 2.0e-17 91.7 53 83.0
Thecc.05G148300 Theobroma cacao HOM05D000138 ORTHO05D007692 2.0e-17 91.7 53 84.9
Cpa.g.sc224.4 Carica papaya HOM05D000138 ORTHO05D007692 2.7e-17 91.3 53 83.0
Hma1.2p1_1041F.1_g251070 Hydrangea macrophylla HOM05D000138 ORTHO05D007692 2.7e-17 91.3 52 84.6
Phvul.001G131300 Phaseolus vulgaris HOM05D000138 ORTHO05D007692 2.7e-17 91.3 53 83.0
TWI74G0858 Tripterygium wilfordii HOM05D000138 ORTHO05D007692 2.7e-17 91.3 53 83.0
Ciclev10005012m.g Citrus clementina HOM05D000138 ORTHO05D007692 4.6e-17 90.5 53 83.0
Duzib128G1290 Durio zibethinus HOM05D000138 ORTHO05D007692 4.6e-17 90.5 53 83.0
VMungo1383G2382 Vigna mungo HOM05D000138 ORTHO05D007692 4.6e-17 90.5 53 83.0
AT2G41710 Arabidopsis thaliana HOM05D000138 ORTHO05D007692 7.8e-17 89.7 47 89.4
CANSAT80G2206 Cannabis sativa HOM05D000138 ORTHO05D007692 7.8e-17 89.7 53 83.0
Cfa016808 Carpinus fangiana HOM05D000138 ORTHO05D007692 7.8e-17 89.7 53 83.0
Haze_19841 Corylus avellana HOM05D000138 ORTHO05D007692 7.8e-17 89.7 53 83.0
Manes.09G020700 Manihot esculenta HOM05D000138 ORTHO05D007692 7.8e-17 89.7 53 83.0
Potri.016G056400 Populus trichocarpa HOM05D000138 ORTHO05D007692 7.8e-17 89.7 53 83.0
GSVIVG01033273001 Vitis vinifera HOM05D000138 ORTHO05D007692 7.8e-17 89.7 53 81.1
Glyma.03G136100 Glycine max HOM05D000138 ORTHO05D007692 1.0e-16 89.4 53 81.1
Glyma.19G138000 Glycine max HOM05D000138 ORTHO05D007692 1.0e-16 89.4 53 81.1
Oeu060333.1 Olea europaea HOM05D000138 ORTHO05D007692 1.0e-16 89.4 53 79.2
TPR.G3700 Trifolium pratense HOM05D000138 ORTHO05D007692 1.0e-16 89.4 53 81.1
TWI53G0031 Tripterygium wilfordii HOM05D000138 ORTHO05D007692 1.0e-16 89.4 53 83.0
Rhsim03G0027000 Rhododendron simsii HOM05D000138 ORTHO05D007692 1.3e-16 89.0 53 79.2
RcHm_v2.0_Chr3g0482661 Rosa chinensis HOM05D000138 ORTHO05D007692 1.3e-16 89.0 53 81.1
MELO3C009804.2 Cucumis melo HOM05D000138 ORTHO05D007692 1.7e-16 88.6 53 81.1
CsaV3_3G040690 Cucumis sativus L. HOM05D000138 ORTHO05D007692 1.7e-16 88.6 53 81.1
Dinv12501 Davidia involucrata HOM05D000138 ORTHO05D007692 1.7e-16 88.6 51 84.3
Potri.006G049700 Populus trichocarpa HOM05D000138 ORTHO05D007692 1.7e-16 88.6 53 81.1
Prupe.7G058300 Prunus persica HOM05D000138 ORTHO05D007692 1.7e-16 88.6 51 84.3
TAR633G1382 Trochodendron aralioides HOM05D000138 ORTHO05D007692 1.7e-16 88.6 53 81.1
MSTRG.16321 Avicennia marina HOM05D000138 ORTHO05D007692 2.3e-16 88.2 53 81.1
Carub.0004s2399 Capsella rubella HOM05D000138 ORTHO05D007692 2.3e-16 88.2 51 82.4
Ca_08447_v3 Cicer arietinum L. HOM05D000138 ORTHO05D007692 2.3e-16 88.2 50 86.0
Gohir.A02G107600 Gossypium hirsutum HOM05D000138 ORTHO05D007692 2.3e-16 88.2 53 83.0
Gohir.D03G068900 Gossypium hirsutum HOM05D000138 ORTHO05D007692 2.3e-16 88.2 53 83.0
Gorai.003G091500 Gossypium raimondii HOM05D000138 ORTHO05D007692 2.3e-16 88.2 53 83.0
Lj1g0025601 Lotus japonicus HOM05D000138 ORTHO05D007692 2.3e-16 88.2 50 86.0
Medtr7g091390 Medicago truncatula HOM05D000138 ORTHO05D007692 2.3e-16 88.2 50 86.0
Psat3g072920 Pisum sativum HOM05D000138 ORTHO05D007692 2.3e-16 88.2 50 86.0
PGR004G0013 Punica granatum HOM05D000138 ORTHO05D007692 2.3e-16 88.2 50 86.0
Sp4g23960 Schrenkiella parvula HOM05D000138 ORTHO05D007692 2.3e-16 88.2 51 82.4
vmacro07841 Vaccinium macrocarpon HOM05D000138 ORTHO05D007692 2.3e-16 88.2 51 82.4
AL4G40020 Arabidopsis lyrata HOM05D000138 ORTHO05D007692 3.0e-16 87.8 50 84.0
BolC4t21928H Brassica oleracea HOM05D000138 ORTHO05D007692 3.0e-16 87.8 46 89.1
CARHR136810 Cardamine hirsuta HOM05D000138 ORTHO05D007692 3.0e-16 87.8 50 84.0
Lju124A42T65 Lonicera japonica HOM05D000138 ORTHO05D007692 3.0e-16 87.8 53 77.4
CiPaw.10G034100 Carya illinoinensis HOM05D000138 ORTHO05D007692 3.9e-16 87.4 53 79.2
ClCG10G015750 Citrullus lanatus HOM05D000138 ORTHO05D007692 3.9e-16 87.4 53 83.0
Thhalv10016812m.g Eutrema salsugineum HOM05D000138 ORTHO05D007692 3.9e-16 87.4 51 80.4
Sed0006957 Sechium edule HOM05D000138 ORTHO05D007692 3.9e-16 87.4 53 79.2
BcaC02g12786 Brassica carinata HOM05D000138 ORTHO05D007692 5.0e-16 87.0 51 80.4
A05p02430 Brassica napus HOM05D000138 ORTHO05D007692 5.0e-16 87.0 51 80.4
C04p02880 Brassica napus HOM05D000138 ORTHO05D007692 5.0e-16 87.0 51 80.4
Lalb_Chr20g0110541 Lupinus albus HOM05D000138 ORTHO05D007692 5.0e-16 87.0 53 79.2
BraA05t19237Z Brassica rapa HOM05D000138 ORTHO05D007692 8.6e-16 86.3 46 87.0
Cc09_g06510 Coffea canephora HOM05D000138 ORTHO05D007692 8.6e-16 86.3 50 82.0
Lalb_Chr25g0287151 Lupinus albus HOM05D000138 ORTHO05D007692 8.6e-16 86.3 50 84.0
SalBow8G1225 Salvia bowleyana HOM05D000138 ORTHO05D007692 8.6e-16 86.3 49 85.7
SalBow8G3323 Salvia bowleyana HOM05D000138 ORTHO05D007692 8.6e-16 86.3 49 85.7
Actinidia09321 Actinidia chinensis HOM05D000138 ORTHO05D007692 1.1e-15 85.9 53 75.5
Aqoxy1G00232 Aquilegia oxysepala HOM05D000138 ORTHO05D007692 1.1e-15 85.9 53 77.4
C03p27910 Brassica napus HOM05D000138 ORTHO05D007692 1.1e-15 85.9 51 80.4
FvH4_6g24090 Fragaria vesca HOM05D000138 ORTHO05D007692 1.1e-15 85.9 50 84.0
FAN02G1957 Fragaria x ananassa HOM05D000138 ORTHO05D007692 1.1e-15 85.9 50 84.0
FAN05G2534 Fragaria x ananassa HOM05D000138 ORTHO05D007692 1.1e-15 85.9 50 84.0
FAN09G0928 Fragaria x ananassa HOM05D000138 ORTHO05D007692 1.1e-15 85.9 50 84.0
FAN14G1085 Fragaria x ananassa HOM05D000138 ORTHO05D007692 1.1e-15 85.9 50 84.0
MD14G1076000 Malus domestica HOM05D000138 ORTHO05D007692 1.1e-15 85.9 53 75.5
Sabra16G0058900 Salix brachista HOM05D000138 ORTHO05D007692 1.1e-15 85.9 53 81.1
THA.LOC104817716 Tarenaya hassleriana HOM05D000138 ORTHO05D007692 1.1e-15 85.9 50 80.0
MD12G1079800 Malus domestica HOM05D000138 ORTHO05D007692 1.5e-15 85.5 53 73.6
Aa31LG1G23730 Aethionema arabicum HOM05D000138 ORTHO05D007692 1.9e-15 85.1 49 83.7
A03p23390 Brassica napus HOM05D000138 ORTHO05D007692 1.9e-15 85.1 51 78.4
Sed0019964 Sechium edule HOM05D000138 ORTHO05D007692 1.9e-15 85.1 53 75.5
Actinidia39217 Actinidia chinensis HOM05D000138 ORTHO05D007692 2.5e-15 84.7 51 78.4
MD12G1075200 Malus domestica HOM05D000138 ORTHO05D007692 2.5e-15 84.7 53 73.6
BcaNung06816 Brassica carinata HOM05D000138 ORTHO05D007692 4.3e-15 84.0 49 81.6
BolC3t15163H Brassica oleracea HOM05D000138 ORTHO05D007692 4.3e-15 84.0 45 88.9
BraA03t11556Z Brassica rapa HOM05D000138 ORTHO05D007692 5.6e-15 83.6 51 76.5
unitig_747.g21424 Utricularia gibba HOM05D000138 ORTHO05D007692 5.6e-15 83.6 51 76.5
THA.LOC104824439 Tarenaya hassleriana HOM05D000138 ORTHO05D007692 7.3e-15 83.2 50 82.0
unitig_6.g29261 Utricularia gibba HOM05D000138 ORTHO05D007692 2.1e-14 81.6 45 84.4
Eucgr.A02341 Eucalyptus grandis HOM05D000138 ORTHO05D007692 4.7e-14 80.5 46 84.8
QL07p000916 Quercus lobata HOM05D000138 ORTHO05D007692 4.7e-14 80.5 54 74.1
PSO384G1510 Papaver somniferum HOM05D000138 ORTHO05D007692 6.2e-14 80.1 56 67.9
PSO339G6669 Papaver somniferum HOM05D000138 ORTHO05D007692 8.1e-14 79.7 56 66.1
Nn7g36311 Nelumbo nucifera HOM05D000138 ORTHO05D007692 1.4e-13 79.0 46 84.8
HanXRQChr10g0296651 Helianthus annuus HOM05D000138 ORTHO05D007692 2.3e-13 78.2 48 77.1
MBI19_g41434_MAGBIO Magnolia biondii HOM05D000138 ORTHO05D007692 6.8e-13 76.6 46 78.3
Lsat_1_v5_gn_9_30600 Lactuca sativa HOM05D000138 ORTHO05D007692 8.9e-13 76.3 48 72.9
CDE02G1902 Ceratophyllum demersum HOM05D000138 ORTHO05D007692 7.5e-12 73.2 45 75.6
DCAR_009065 Daucus carota HOM05D000138 ORTHO05D007692 3.7e-11 70.9 49 73.5
ECA247G0185 Erigeron canadensis HOM05D000138 ORTHO05D007692 8.3e-11 69.7 49 69.4
Hund24701 Selenicereus undatus HOM05D000138 ORTHO05D007692 1.1e-10 69.3 41 80.5
ATR0188G014 Amborella trichopoda HOM05D000138 ORTHO05D000078 5.4e-10 67.0 47 72.3
Sc13g0001680 Simmondsia chinensis HOM05D000138 ORTHO05D007692 7.1e-10 66.6 43 79.1
Glyma.02G185200 Glycine max HOM05D000138 ORTHO05D007692 9.2e-10 66.2 42 76.2
HPP92_013981 Vanilla planifolia HOM05D000138 ORTHO05D007692 1.6e-09 65.5 36 88.9
EL10Ac3g07099 Beta vulgaris HOM05D000138 ORTHO05D007692 2.1e-09 65.1 42 73.8
Pp3c6_21840 Physcomitrium patens HOM05D000138 ORTHO05D000078 1.0e-08 62.8 45 62.2
Os05g0389000 Oryza sativa ssp. japonica HOM05D000138 ORTHO05D007692 3.0e-08 61.2 39 74.4
AUR62026048 Chenopodium quinoa HOM05D000138 ORTHO05D007692 3.9e-08 60.8 43 72.1
SEGI_01117 Sequoiadendron giganteum HOM05D000138 ORTHO05D007692 3.9e-08 60.8 41 70.7
SEGI_35300 Sequoiadendron giganteum HOM05D000138 ORTHO05D000078 3.9e-08 60.8 41 70.7
Pp3c5_2780 Physcomitrium patens HOM05D000138 ORTHO05D000078 5.1e-08 60.5 46 63.0
Zm00001eb287100 Zea mays HOM05D000138 ORTHO05D007692 8.6e-08 59.7 38 73.7
Ah.13g076510 Amaranthus hybridus HOM05D004671 ORTHO05D007692 1.9e-07 58.5 42 66.7
MBI19_g25065_MAGBIO Magnolia biondii HOM05D000138 ORTHO05D007692 1.9e-07 58.5 32 84.4
AagrBONN_evm.TU.Sc2ySwM_228.5092 Anthoceros agrestis HOM05D000138 ORTHO05D000078 4.7e-06 53.9 44 56.8
QL12p013658 Quercus lobata HOM05D000138 ORTHO05D007692 4.7e-06 53.9 46 63.0


User provided reference genes

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