Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g030170.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 0.0e+00 1102.0 534 100.0
Sopen02g009490 Solanum pennellii HOM05D003778 ORTHO05D004418 0.0e+00 1099.0 534 99.8
PGSC0003DMG400011801 Solanum tuberosum HOM05D003778 ORTHO05D004418 0.0e+00 1087.0 534 98.3
CAN.G79.46 Capsicum annuum HOM05D003778 ORTHO05D004418 3.0e-307 1057.7 534 94.6
Peaxi162Scf01123g00017 Petunia axillaris HOM05D003778 ORTHO05D004418 1.4e-301 1038.9 534 92.3
Nitab4.5_0000265g0030 Nicotiana tabacum HOM05D003778 ORTHO05D004418 3.9e-299 1030.8 534 91.4
Dinv17604 Davidia involucrata HOM05D003778 ORTHO05D004418 2.8e-289 998.0 534 87.8
PGR004G0624 Punica granatum HOM05D003778 ORTHO05D004418 3.6e-289 997.7 534 87.6
SGA_v2.0_scaffold223G42894 Striga asiatica HOM05D003778 ORTHO05D004418 6.2e-289 996.9 534 87.8
CANSAT78G1874 Cannabis sativa HOM05D003778 ORTHO05D004418 1.8e-288 995.3 534 87.8
TAR629G2113 Trochodendron aralioides HOM05D003778 ORTHO05D004418 1.8e-288 995.3 534 87.5
TAR035G0003 Trochodendron aralioides HOM05D003778 ORTHO05D004418 5.2e-288 993.8 534 87.3
Potri.008G084800 Populus trichocarpa HOM05D003778 ORTHO05D004418 2.0e-287 991.9 534 88.2
Cc09_g06490 Coffea canephora HOM05D003778 ORTHO05D004418 2.6e-287 991.5 534 86.3
CiPaw.06G057600 Carya illinoinensis HOM05D003778 ORTHO05D004418 9.9e-287 989.6 534 87.1
MSTRG.16322 Avicennia marina HOM05D003778 ORTHO05D004418 1.7e-286 988.8 534 86.7
Hund24279 Selenicereus undatus HOM05D003778 ORTHO05D004418 2.2e-286 988.4 534 88.0
vmacro00468 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 3.8e-286 987.6 534 87.5
MD16G1000400 Malus domestica HOM05D003778 ORTHO05D004418 4.9e-286 987.3 534 87.1
MD13G1007700 Malus domestica HOM05D003778 ORTHO05D004418 8.4e-286 986.5 534 87.1
Sabra08G0063000 Salix brachista HOM05D003778 ORTHO05D004418 8.4e-286 986.5 534 87.3
arahy.Tifrunner.gnm1.ann1.G65HTE Arachis hypogaea HOM05D003778 ORTHO05D004418 2.4e-285 984.9 534 86.9
Actinidia04080 Actinidia chinensis HOM05D003778 ORTHO05D004418 4.2e-285 984.2 534 87.1
QL03p043582 Quercus lobata HOM05D003778 ORTHO05D004418 4.2e-285 984.2 534 87.1
SalBow8G3862 Salvia bowleyana HOM05D003778 ORTHO05D004418 7.1e-285 983.4 534 86.9
Haze_11725 Corylus avellana HOM05D003778 ORTHO05D004418 2.1e-284 981.9 534 86.3
Eucgr.J00851 Eucalyptus grandis HOM05D003778 ORTHO05D004418 2.1e-284 981.9 533 86.3
Potri.010G170000 Populus trichocarpa HOM05D003778 ORTHO05D004418 2.1e-284 981.9 534 87.1
CSS0038233 Camellia sinensis var. sinensis HOM05D003778 ORTHO05D004418 3.5e-284 981.1 534 86.7
SalBow2G0375 Salvia bowleyana HOM05D003778 ORTHO05D004418 3.5e-284 981.1 534 86.7
Lalb_Chr01g0001531 Lupinus albus HOM05D003778 ORTHO05D004418 4.6e-284 980.7 534 86.5
Ciclev10030984m.g Citrus clementina HOM05D003778 ORTHO05D004418 1.3e-283 979.2 534 87.5
Prupe.1G345300 Prunus persica HOM05D003778 ORTHO05D004418 1.3e-283 979.2 534 87.1
Gohir.A13G026100 Gossypium hirsutum HOM05D003778 ORTHO05D004418 3.9e-283 977.6 534 86.5
VMungo1127G1615 Vigna mungo HOM05D003778 ORTHO05D004418 3.9e-283 977.6 534 86.3
Migut.M01947 Erythranthe guttata HOM05D003778 ORTHO05D004418 1.5e-282 975.7 534 85.4
COL.COLO4_27669 Corchorus olitorius HOM05D003778 ORTHO05D004418 1.9e-282 975.3 534 86.9
arahy.Tifrunner.gnm1.ann1.J2YHHP Arachis hypogaea HOM05D003778 ORTHO05D004418 4.3e-282 974.2 534 86.3
Gohir.D13G024700 Gossypium hirsutum HOM05D003778 ORTHO05D004418 4.3e-282 974.2 534 86.3
TPR.G21559 Trifolium pratense HOM05D003778 ORTHO05D004418 7.3e-282 973.4 534 85.8
Sabra10G0129800 Salix brachista HOM05D003778 ORTHO05D004418 1.3e-281 972.6 534 86.1
Gorai.013G027900 Gossypium raimondii HOM05D003778 ORTHO05D004418 1.6e-281 972.2 534 86.1
Lj6A722T93 Lonicera japonica HOM05D003778 ORTHO05D004418 2.1e-281 971.8 534 86.7
Phvul.011G031700 Phaseolus vulgaris HOM05D003778 ORTHO05D004418 2.8e-281 971.5 534 86.1
Psat7g174000 Pisum sativum HOM05D003778 ORTHO05D004418 3.6e-281 971.1 534 85.4
Rhsim09G0073500 Rhododendron simsii HOM05D003778 ORTHO05D004418 1.1e-280 969.5 534 86.3
Medtr4g074350 Medicago truncatula HOM05D003778 ORTHO05D004418 1.4e-280 969.1 534 85.8
Lalb_Chr03g0024881 Lupinus albus HOM05D003778 ORTHO05D004418 1.8e-280 968.8 534 85.6
Atru.chr11.1231 Acer truncatum HOM05D003778 ORTHO05D004418 9.0e-280 966.5 534 86.1
Atru.chr11.1319 Acer truncatum HOM05D003778 ORTHO05D004418 9.0e-280 966.5 534 86.1
Glyma.11G103500 Glycine max HOM05D003778 ORTHO05D004418 1.2e-279 966.1 534 85.0
Rhsim09G0073400 Rhododendron simsii HOM05D003778 ORTHO05D004418 1.2e-279 966.1 534 86.1
DCAR_002565 Daucus carota HOM05D003778 ORTHO05D004418 1.5e-279 965.7 534 85.6
Lj3g0022719 Lotus japonicus HOM05D003778 ORTHO05D004418 1.5e-279 965.7 534 85.6
Thecc.02G311500 Theobroma cacao HOM05D003778 ORTHO05D004418 2.0e-279 965.3 534 85.8
TWI74G0502 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 2.6e-279 964.9 534 85.8
Manes.03G081200 Manihot esculenta HOM05D003778 ORTHO05D004418 3.4e-279 964.5 534 85.6
Ca_03035_v3 Cicer arietinum L. HOM05D003778 ORTHO05D004418 4.4e-279 964.1 534 85.2
Sc06g0007850 Simmondsia chinensis HOM05D003778 ORTHO05D004418 9.9e-279 963.0 534 84.8
DCAR_030405 Daucus carota HOM05D003778 ORTHO05D004418 1.3e-278 962.6 534 85.4
TWI77G0069 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 1.3e-278 962.6 534 84.5
AUR62017664 Chenopodium quinoa HOM05D003778 ORTHO05D004418 4.9e-278 960.7 533 85.7
Duzib248G0532 Durio zibethinus HOM05D003778 ORTHO05D004418 8.4e-278 959.9 534 85.8
ClCG09G004610 Citrullus lanatus HOM05D003778 ORTHO05D004418 1.9e-277 958.7 534 84.5
PSO017G4886 Papaver somniferum HOM05D003778 ORTHO05D004418 1.9e-277 958.7 534 84.3
PSO478G4461 Papaver somniferum HOM05D003778 ORTHO05D004418 1.9e-277 958.7 534 84.3
AUR62015201 Chenopodium quinoa HOM05D003778 ORTHO05D004418 2.4e-277 958.4 533 85.7
Ah.01g001630 Amaranthus hybridus HOM05D003778 ORTHO05D004418 4.2e-277 957.6 534 85.0
HanXRQChr13g0388101 Helianthus annuus HOM05D003778 ORTHO05D004418 4.2e-277 957.6 534 84.8
CDE05G2073 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 9.3e-277 956.4 534 84.1
ATR0618G344 Amborella trichopoda HOM05D003778 ORTHO05D004418 1.6e-276 955.7 534 83.7
MBI03_g24012_MAGBIO Magnolia biondii HOM05D003778 ORTHO05D004418 3.5e-276 954.5 534 84.1
HanXRQChr01g0028571 Helianthus annuus HOM05D003778 ORTHO05D004418 3.0e-275 951.4 534 84.6
Aqoxy3G04278 Aquilegia oxysepala HOM05D003778 ORTHO05D004418 5.1e-275 950.7 534 83.9
THA.LOC104804923 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 7.3e-274 946.8 534 84.3
Nitab4.5_0001219g0170 Nicotiana tabacum HOM05D003778 ORTHO05D004418 1.6e-273 945.7 534 83.0
FAN07G1289 Fragaria x ananassa HOM05D003778 ORTHO05D004418 4.8e-273 944.1 538 84.0
MELO3C023603.2 Cucumis melo HOM05D003778 ORTHO05D004418 6.2e-273 943.7 534 82.2
ECA234G2331 Erigeron canadensis HOM05D003778 ORTHO05D004418 8.1e-273 943.3 534 84.1
Peaxi162Scf00833g00024 Petunia axillaris HOM05D003778 ORTHO05D004418 8.1e-273 943.3 534 82.8
ECA233G5967 Erigeron canadensis HOM05D003778 ORTHO05D004418 1.8e-272 942.2 534 83.5
FvH4_4g36730 Fragaria vesca HOM05D003778 ORTHO05D004418 5.3e-272 940.6 538 83.6
Nitab4.5_0008761g0020 Nicotiana tabacum HOM05D003778 ORTHO05D004418 6.9e-272 940.3 534 82.6
FAN12G0530 Fragaria x ananassa HOM05D003778 ORTHO05D004418 1.2e-271 939.5 538 83.5
SEGI_38803 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 1.2e-271 939.5 533 81.6
ClCG07G016390 Citrullus lanatus HOM05D003778 ORTHO05D004418 1.5e-271 939.1 534 82.8
CsaV3_4G009240 Cucumis sativus L. HOM05D003778 ORTHO05D004418 1.5e-271 939.1 534 82.6
Sed0012416 Sechium edule HOM05D003778 ORTHO05D004418 7.6e-271 936.8 534 82.0
Lsat_1_v5_gn_4_26521 Lactuca sativa HOM05D003778 ORTHO05D004418 1.7e-270 935.6 534 83.3
Solyc02g069490.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 2.2e-270 935.3 534 81.8
Sopen02g018630 Solanum pennellii HOM05D003778 ORTHO05D004418 2.2e-270 935.3 534 81.8
RcHm_v2.0_Chr4g0446441 Rosa chinensis HOM05D003778 ORTHO05D004418 2.9e-270 934.9 538 82.7
PGSC0003DMG400021142 Solanum tuberosum HOM05D003778 ORTHO05D004418 3.8e-270 934.5 534 81.5
CsaV3_7G030530 Cucumis sativus L. HOM05D003778 ORTHO05D004418 6.4e-270 933.7 534 81.3
Lsat_1_v5_gn_8_32421 Lactuca sativa HOM05D003778 ORTHO05D004418 1.1e-269 932.9 534 82.8
CAN.G675.20 Capsicum annuum HOM05D003778 ORTHO05D004418 1.9e-269 932.2 534 82.2
A01p34930 Brassica napus HOM05D003778 ORTHO05D004418 1.6e-268 929.1 534 81.8
BraA05t21813Z Brassica rapa HOM05D003778 ORTHO05D004418 1.6e-268 929.1 534 82.0
BcaC05g28402 Brassica carinata HOM05D003778 ORTHO05D004418 3.5e-268 927.9 534 81.8
A05p29300 Brassica napus HOM05D003778 ORTHO05D004418 3.5e-268 927.9 534 81.8
C05p44820 Brassica napus HOM05D003778 ORTHO05D004418 3.5e-268 927.9 534 81.8
BolC5t33208H Brassica oleracea HOM05D003778 ORTHO05D004418 6.0e-268 927.2 534 81.8
BraA01t03576Z Brassica rapa HOM05D003778 ORTHO05D004418 1.0e-267 926.4 534 81.5
Sp3g17830 Schrenkiella parvula HOM05D003778 ORTHO05D004418 1.0e-267 926.4 534 81.3
Thhalv10020412m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 3.0e-267 924.9 534 81.3
C01p44340 Brassica napus HOM05D003778 ORTHO05D004418 3.9e-267 924.5 534 81.3
BolC1t04399H Brassica oleracea HOM05D003778 ORTHO05D004418 3.9e-267 924.5 534 81.3
Lj6g0014800 Lotus japonicus HOM05D003778 ORTHO05D004418 1.1e-266 922.9 534 82.2
Zm00001eb228910 Zea mays HOM05D003778 ORTHO05D004418 1.1e-266 922.9 534 83.3
Aa31LG8G6590 Aethionema arabicum HOM05D003778 ORTHO05D004418 4.3e-266 921.0 534 80.9
Carub.0003s1970 Capsella rubella HOM05D003778 ORTHO05D004418 7.4e-266 920.2 534 80.9
BcaB06g26051 Brassica carinata HOM05D003778 ORTHO05D004418 9.6e-266 919.8 534 80.9
AL3G33330 Arabidopsis lyrata HOM05D003778 ORTHO05D004418 2.8e-265 918.3 534 80.9
Os10g0397400 Oryza sativa ssp. japonica HOM05D003778 ORTHO05D004418 3.7e-265 917.9 534 83.0
Sp1g37100 Schrenkiella parvula HOM05D003778 ORTHO05D004418 8.1e-265 916.8 534 81.1
Sed0007506 Sechium edule HOM05D003778 ORTHO05D004418 2.4e-264 915.2 534 80.5
EL10Ac9g22920 Beta vulgaris HOM05D003778 ORTHO05D004418 2.6e-263 911.8 534 81.6
CARHR095330 Cardamine hirsuta HOM05D003778 ORTHO05D004418 5.8e-263 910.6 534 79.2
Lj6g0026630 Lotus japonicus HOM05D003778 ORTHO05D004418 1.0e-262 909.8 534 81.1
CAN.G1362.14 Capsicum annuum HOM05D003778 ORTHO05D004418 1.3e-262 909.4 534 79.6
AT3G19820 Arabidopsis thaliana HOM05D003778 ORTHO05D004418 2.2e-262 908.7 534 80.0
BraA06t23537Z Brassica rapa HOM05D003778 ORTHO05D004418 2.9e-262 908.3 534 80.3
BolC6t35641H Brassica oleracea HOM05D003778 ORTHO05D004418 3.8e-262 907.9 534 80.5
A06p03260 Brassica napus HOM05D003778 ORTHO05D004418 6.5e-262 907.1 534 80.1
THA.LOC104815230 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 1.1e-261 906.4 534 79.2
FAN17G2175 Fragaria x ananassa HOM05D003778 ORTHO05D004418 3.5e-260 901.4 538 81.8
SMO367G0245 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 6.7e-251 870.5 533 76.9
C06p05320 Brassica napus HOM05D003778 ORTHO05D004418 3.7e-249 864.8 507 80.7
AagrBONN_evm.TU.Sc2ySwM_117.797 Anthoceros agrestis HOM05D003778 ORTHO05D004418 6.1e-244 847.4 533 74.5
Peaxi162Scf00312g00221 Petunia axillaris HOM05D003778 ORTHO05D004418 1.5e-242 842.8 535 75.9
BcaC08g43211 Brassica carinata HOM05D003778 ORTHO05D004418 2.0e-242 842.4 534 75.7
Peaxi162Scf00695g00218 Petunia axillaris HOM05D003778 ORTHO05D004418 1.7e-241 839.3 535 75.3
Lsat_1_v5_gn_3_32901 Lactuca sativa HOM05D003778 ORTHO05D004418 3.1e-240 835.1 534 73.8
HanXRQChr15g0483641 Helianthus annuus HOM05D003778 ORTHO05D004418 4.1e-240 834.7 540 72.4
Pp3c7_650 Physcomitrium patens HOM05D003778 ORTHO05D004418 5.3e-240 834.3 533 73.9
Mapoly0190s0010 Marchantia polymorpha HOM05D003778 ORTHO05D004418 1.0e-238 830.1 533 73.9
MELO3C022613.2 Cucumis melo HOM05D003778 ORTHO05D004418 1.4e-235 819.7 455 83.5
unitig_748.g7356 Utricularia gibba HOM05D003778 ORTHO05D004418 2.6e-234 815.5 534 75.7
Pp3c11_26120 Physcomitrium patens HOM05D003778 ORTHO05D004418 6.7e-227 790.8 533 70.7
AUR62018172 Chenopodium quinoa HOM05D003778 ORTHO05D004418 8.0e-212 740.7 425 83.3
Glyma.12G028300 Glycine max HOM05D003778 ORTHO05D004418 7.0e-208 727.6 408 85.8
GSVIVG01010184001 Vitis vinifera HOM05D003778 ORTHO05D004418 1.1e-192 677.2 534 63.9
Oeu008711.1 Olea europaea HOM05D003778 ORTHO05D004418 3.0e-190 669.1 534 63.3
AUR62014967 Chenopodium quinoa HOM05D003778 ORTHO05D004418 1.5e-189 666.8 373 83.4
Mapoly0153s0024 Marchantia polymorpha HOM05D003778 ORTHO05D004418 1.2e-175 620.5 532 56.0
CDE05G2099 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 7.8e-167 591.3 316 84.5
AagrBONN_evm.TU.Sc2ySwM_344.4140 Anthoceros agrestis HOM05D003778 ORTHO05D004418 6.2e-164 581.6 488 54.5
SEGI_20352 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 1.5e-162 577.0 514 52.9
vmacro10903 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 9.6e-157 557.8 401 71.1
Nn4g24924 Nelumbo nucifera HOM05D003778 ORTHO05D004418 3.5e-151 539.3 279 85.7
SMO347G0448 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 2.1e-148 530.0 414 59.7
Nitab4.5_0012697g0010 Nicotiana tabacum HOM05D003778 ORTHO05D004418 1.1e-139 501.1 534 53.4
Nitab4.5_0000876g0110 Nicotiana tabacum HOM05D003778 ORTHO05D004418 7.6e-138 495.0 534 53.0
Zm00001eb190720 Zea mays HOM05D003778 ORTHO05D004418 2.9e-129 466.5 319 71.2
CDE05G1908 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 5.7e-125 452.2 455 54.5
Thhalv10012112m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 3.9e-81 306.6 200 72.0
CBR_g45591 Chara braunii HOM05D003778 ORTHO05D004418 9.5e-80 302.0 491 36.0
C06p05360 Brassica napus HOM05D003778 ORTHO05D004418 4.9e-76 289.7 532 36.1
BcaC08g43207 Brassica carinata HOM05D003778 ORTHO05D004418 1.4e-62 245.0 184 63.0
BolC6t35639H Brassica oleracea HOM05D003778 ORTHO05D004418 3.1e-62 243.8 184 63.0
BcaB04g19062 Brassica carinata HOM05D003778 ORTHO05D004418 4.4e-61 240.0 166 66.9
vmacro10902 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 5.1e-49 199.9 108 84.3
GSVIVG01028580001 Vitis vinifera HOM05D003778 ORTHO05D004418 6.2e-47 193.0 133 72.9
GSVIVG01002973001 Vitis vinifera HOM05D003778 ORTHO05D004418 3.4e-45 187.2 128 73.4
Zm00001eb190730 Zea mays HOM05D003778 ORTHO05D004418 4.2e-43 180.3 116 69.0
C03p50700 Brassica napus HOM05D003778 ORTHO05D004418 9.3e-43 179.1 166 58.4
C03p50680 Brassica napus HOM05D003778 ORTHO05D004418 3.5e-42 177.2 166 58.4
BolC3t17357H Brassica oleracea HOM05D003778 ORTHO05D004418 6.0e-42 176.4 166 58.4
BolC3t17355H Brassica oleracea HOM05D003778 ORTHO05D004418 6.7e-41 172.9 166 57.8
Cfa024211 Carpinus fangiana HOM05D003778 ORTHO05D004418 1.1e-38 165.6 323 33.7
Cfa023151 Carpinus fangiana HOM05D003778 ORTHO05D004418 4.3e-32 143.7 495 25.9
Gorai.005G150900 Gossypium raimondii HOM05D003778 ORTHO05D004418 8.2e-31 139.4 87 71.3
PGSC0003DMG400004305 Solanum tuberosum HOM05D003778 ORTHO05D004418 2.6e-29 134.4 77 79.2
A03p41410 Brassica napus HOM05D003778 ORTHO05D004418 5.8e-29 133.3 213 40.4
GSVIVG01033182001 Vitis vinifera HOM05D003778 ORTHO05D008307 1.4e-27 128.6 90 63.3
HanXRQChr08g0230901 Helianthus annuus HOM05D003778 ORTHO05D004418 4.2e-27 127.1 75 72.0
A03p41420 Brassica napus HOM05D003778 ORTHO05D004418 4.5e-21 107.1 166 42.2
BcaC01g03602 Brassica carinata HOM05D003778 ORTHO05D004418 5.9e-21 106.7 184 39.1
C06p05290 Brassica napus HOM05D003778 ORTHO05D033430 1.2e-18 99.0 103 47.6
BraA03t13295Z Brassica rapa HOM05D003778 ORTHO05D004418 1.0e-12 79.3 46 73.9


User provided reference genes

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