Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g022920.1 Solanum lycopersicum HOM05D004305 ORTHO05D005159 3.9e-227 791.2 414 100.0
Sopen02g006550 Solanum pennellii HOM05D004305 ORTHO05D005159 1.4e-192 676.4 374 96.3
PGSC0003DMG400021011 Solanum tuberosum HOM05D004305 ORTHO05D005159 9.0e-184 647.1 448 80.4
Peaxi162Scf00395g00054 Petunia axillaris HOM05D004305 ORTHO05D005159 2.4e-99 366.7 447 54.6
Nitab4.5_0000076g0140 Nicotiana tabacum HOM05D004305 ORTHO05D005159 1.7e-97 360.5 461 56.4
Nitab4.5_0004204g0010 Nicotiana tabacum HOM05D004305 ORTHO05D005159 2.7e-95 353.2 461 55.5
Sopen02g019200 Solanum pennellii HOM05D004305 ORTHO05D005159 1.1e-40 171.8 402 36.1
Solyc02g070040.1 Solanum lycopersicum HOM05D004305 ORTHO05D005159 2.3e-38 164.1 402 35.8
PGSC0003DMG400021114 Solanum tuberosum HOM05D004305 ORTHO05D005159 5.7e-37 159.5 402 36.8
Cc09_g07570 Coffea canephora HOM05D004305 ORTHO05D005159 1.1e-35 155.2 471 32.9
Oeu060316.1 Olea europaea HOM05D004305 ORTHO05D005159 4.5e-34 149.8 491 32.4
Oeu041117.1 Olea europaea HOM05D004305 ORTHO05D005159 5.9e-34 149.4 471 31.8
MSTRG.7546 Avicennia marina HOM05D004305 ORTHO05D005159 2.2e-33 147.5 488 30.9
Lj1P1160T59 Lonicera japonica HOM05D004305 ORTHO05D005159 7.2e-32 142.5 472 33.3
Migut.M01906 Erythranthe guttata HOM05D004305 ORTHO05D005159 2.1e-31 141.0 469 32.8
MSTRG.16299 Avicennia marina HOM05D004305 ORTHO05D005159 1.7e-28 131.3 496 29.6
Ciclev10015182m.g Citrus clementina HOM05D004305 ORTHO05D005159 4.1e-27 126.7 465 31.2
Oeu015165.2 Olea europaea HOM05D004305 ORTHO05D005159 1.2e-26 125.2 468 29.5
Oeu040075.1 Olea europaea HOM05D004305 ORTHO05D005159 5.9e-26 122.9 306 35.3
Potri.001G464300 Populus trichocarpa HOM05D004305 ORTHO05D005159 2.3e-25 120.9 446 28.7
Lsat_1_v5_gn_9_25860 Lactuca sativa HOM05D004305 ORTHO05D005159 8.6e-25 119.0 433 31.9
CSS0026993 Camellia sinensis var. sinensis HOM05D004305 ORTHO05D005159 5.5e-24 116.3 494 29.8
Lj4g0027556 Lotus japonicus HOM05D004305 ORTHO05D005159 1.2e-23 115.2 453 31.1
Nitab4.5_0001583g0210 Nicotiana tabacum HOM05D004305 ORTHO05D005159 1.6e-23 114.8 231 38.1
Thecc.06G003200 Theobroma cacao HOM05D004305 ORTHO05D005159 4.7e-23 113.2 429 29.1
Duzib235G0167 Durio zibethinus HOM05D004305 ORTHO05D005159 1.4e-22 111.7 415 31.1
Sabra11G0141400 Salix brachista HOM05D004305 ORTHO05D005159 1.8e-22 111.3 464 28.9
Lalb_Chr18g0058121 Lupinus albus HOM05D004305 ORTHO05D005159 2.3e-22 110.9 440 28.9
Atru.chr10.781 Acer truncatum HOM05D004305 ORTHO05D005159 3.0e-22 110.5 412 32.3
DCAR_003840 Daucus carota HOM05D004305 ORTHO05D005159 3.0e-22 110.5 425 32.0
unitig_32.g10874 Utricularia gibba HOM05D004305 ORTHO05D005159 1.2e-21 108.6 411 29.4
Dinv06927 Davidia involucrata HOM05D004305 ORTHO05D005159 1.5e-21 108.2 372 32.0
GSVIVG01021709001 Vitis vinifera HOM05D004305 ORTHO05D005159 3.4e-21 107.1 445 28.8
Lalb_Chr07g0189031 Lupinus albus HOM05D004305 ORTHO05D005159 7.5e-21 105.9 463 29.2
HanXRQChr08g0237311 Helianthus annuus HOM05D004305 ORTHO05D005159 1.3e-20 105.1 425 30.8
TWI15G0126 Tripterygium wilfordii HOM05D004305 ORTHO05D005159 1.7e-20 104.8 442 28.7
Sabra16G0315300 Salix brachista HOM05D004305 ORTHO05D005159 2.8e-20 104.0 468 27.6
Sabra16G0313900 Salix brachista HOM05D004305 ORTHO05D005159 3.7e-20 103.6 474 28.3
Cpa.g.c43226 Carica papaya HOM05D004305 ORTHO05D005159 4.9e-20 103.2 474 31.0
CANSAT35G0942 Cannabis sativa HOM05D004305 ORTHO05D005159 1.4e-19 101.7 476 28.6
AT4G20880 Arabidopsis thaliana HOM05D004305 ORTHO05D005159 9.2e-19 99.0 424 30.7
Duzib192G0088 Durio zibethinus HOM05D004305 ORTHO05D005159 1.6e-18 98.2 408 29.2
Glyma.15G132400 Glycine max HOM05D004305 ORTHO05D005159 2.0e-18 97.8 420 30.0
Rhsim02G0163100 Rhododendron simsii HOM05D004305 ORTHO05D005159 2.0e-18 97.8 503 29.4
MD05G1269300 Malus domestica HOM05D004305 ORTHO05D005159 3.5e-18 97.1 507 27.6
SGA_v2.0_scaffold1G00275 Striga asiatica HOM05D004305 ORTHO05D005159 5.9e-18 96.3 452 28.8
unitig_748.g8282 Utricularia gibba HOM05D004305 ORTHO05D005159 5.9e-18 96.3 414 27.1
Potri.011G162400 Populus trichocarpa HOM05D004305 ORTHO05D005159 7.8e-18 95.9 496 28.0
VMungo0540G0062 Vigna mungo HOM05D004305 ORTHO05D005159 7.8e-18 95.9 414 29.7
Actinidia13459 Actinidia chinensis HOM05D004305 ORTHO05D005159 1.0e-17 95.5 176 40.9
Gorai.010G144500 Gossypium raimondii HOM05D004305 ORTHO05D005159 1.3e-17 95.1 405 29.1
BcaNung07356 Brassica carinata HOM05D004305 ORTHO05D005159 2.3e-17 94.4 417 30.2
Gohir.D06G124500 Gossypium hirsutum HOM05D004305 ORTHO05D005159 2.3e-17 94.4 405 28.9
Gohir.A06G119900 Gossypium hirsutum HOM05D004305 ORTHO05D005159 5.0e-17 93.2 405 29.6
MELO3C002832.2 Cucumis melo HOM05D004305 ORTHO05D005159 6.6e-17 92.8 454 27.8
Nn1g03508 Nelumbo nucifera HOM05D004305 ORTHO05D005159 8.6e-17 92.4 454 27.1
C07p50970 Brassica napus HOM05D004305 ORTHO05D005159 1.5e-16 91.7 419 30.3
BolC7t45599H Brassica oleracea HOM05D004305 ORTHO05D005159 1.9e-16 91.3 421 30.4
MBI02_g39880_MAGBIO Magnolia biondii HOM05D004305 ORTHO05D005159 4.3e-16 90.1 171 37.4
Prupe.4G095400 Prunus persica HOM05D004305 ORTHO05D005159 4.3e-16 90.1 194 37.6
Lj6g0010125 Lotus japonicus HOM05D004305 ORTHO05D005159 5.6e-16 89.7 396 29.5
RcHm_v2.0_Chr5g0017411 Rosa chinensis HOM05D004305 ORTHO05D005159 5.6e-16 89.7 464 28.0
BcaNung04140 Brassica carinata HOM05D004305 ORTHO05D005159 7.3e-16 89.4 428 29.2
QL05p063597 Quercus lobata HOM05D004305 ORTHO05D005159 7.3e-16 89.4 454 26.7
QL93p0201_0023 Quercus lobata HOM05D004305 ORTHO05D005159 7.3e-16 89.4 454 26.7
CsaV3_1G037140 Cucumis sativus L. HOM05D004305 ORTHO05D005159 9.5e-16 89.0 448 26.3
Psat1g165840 Pisum sativum HOM05D004305 ORTHO05D005159 9.5e-16 89.0 412 29.6
ECA247G2099 Erigeron canadensis HOM05D004305 ORTHO05D005159 1.2e-15 88.6 406 29.3
BcaNung05413 Brassica carinata HOM05D004305 ORTHO05D005159 1.6e-15 88.2 419 30.1
Manes.14G124700 Manihot esculenta HOM05D004305 ORTHO05D005159 1.6e-15 88.2 481 27.7
SGA_v2.0_scaffold223G42870 Striga asiatica HOM05D004305 ORTHO05D005159 2.1e-15 87.8 408 29.4
TWI38G0672 Tripterygium wilfordii HOM05D004305 ORTHO05D005159 3.6e-15 87.0 425 26.6
A03p52530 Brassica napus HOM05D004305 ORTHO05D005159 6.1e-15 86.3 415 29.2
Glyma.09G026200 Glycine max HOM05D004305 ORTHO05D005159 6.1e-15 86.3 427 27.6
A01p12300 Brassica napus HOM05D004305 ORTHO05D005159 1.4e-14 85.1 430 28.8
AL7G33270 Arabidopsis lyrata HOM05D004305 ORTHO05D005159 1.8e-14 84.7 433 28.6
C01p14710 Brassica napus HOM05D004305 ORTHO05D005159 1.8e-14 84.7 438 25.8
BolC1t01423H Brassica oleracea HOM05D004305 ORTHO05D005159 1.8e-14 84.7 438 25.8
BraA01t01174Z Brassica rapa HOM05D004305 ORTHO05D005159 1.8e-14 84.7 424 28.3
Medtr2g031350 Medicago truncatula HOM05D004305 ORTHO05D005159 3.0e-14 84.0 431 28.1
Eucgr.D00100 Eucalyptus grandis HOM05D004305 ORTHO05D005159 4.0e-14 83.6 470 27.2
Actinidia31373 Actinidia chinensis HOM05D004305 ORTHO05D005159 5.2e-14 83.2 304 31.9
BraA03t14328Z Brassica rapa HOM05D004305 ORTHO05D005159 5.2e-14 83.2 414 30.7
ClCG03G008260 Citrullus lanatus HOM05D004305 ORTHO05D005159 5.2e-14 83.2 452 27.9
Carub.0007s2055 Capsella rubella HOM05D004305 ORTHO05D005159 8.9e-14 82.4 437 26.3
COL.COLO4_26846 Corchorus olitorius HOM05D004305 ORTHO05D005159 8.9e-14 82.4 171 35.7
Cfa000806 Carpinus fangiana HOM05D004305 ORTHO05D005159 1.2e-13 82.0 464 28.7
ClCG01G025280 Citrullus lanatus HOM05D004305 ORTHO05D005159 1.2e-13 82.0 436 25.9
unitig_748.g7348 Utricularia gibba HOM05D004305 ORTHO05D005159 1.2e-13 82.0 291 28.9
Aa31LG6G2950 Aethionema arabicum HOM05D004305 ORTHO05D005159 1.5e-13 81.6 447 28.2
Phvul.006G126000 Phaseolus vulgaris HOM05D004305 ORTHO05D005159 2.0e-13 81.3 413 29.1
BcaB03g11678 Brassica carinata HOM05D004305 ORTHO05D005159 2.6e-13 80.9 425 28.0
Manes.06G058700 Manihot esculenta HOM05D004305 ORTHO05D005159 2.6e-13 80.9 192 36.5
BcaC09g51296 Brassica carinata HOM05D004305 ORTHO05D005159 5.7e-13 79.7 427 25.5
Ca_00869_v3 Cicer arietinum L. HOM05D004305 ORTHO05D005159 5.7e-13 79.7 446 27.8
FvH4_3g10700 Fragaria vesca HOM05D004305 ORTHO05D005159 5.7e-13 79.7 461 28.0
Psat7g094000 Pisum sativum HOM05D004305 ORTHO05D005159 9.8e-13 79.0 419 27.0
Sc03g0008520 Simmondsia chinensis HOM05D004305 ORTHO05D005159 2.9e-12 77.4 216 32.9
FAN11G3528 Fragaria x ananassa HOM05D004305 ORTHO05D005159 3.7e-12 77.0 449 27.6
MELO3C007060.2 Cucumis melo HOM05D004305 ORTHO05D005159 1.8e-11 74.7 440 25.2
MD10G1248100 Malus domestica HOM05D004305 ORTHO05D005159 2.4e-11 74.3 504 23.8
BolC3t20584H Brassica oleracea HOM05D004305 ORTHO05D005159 4.1e-11 73.6 407 28.3
A08p14960 Brassica napus HOM05D004305 ORTHO05D005159 9.2e-11 72.4 419 28.9
BraA08t33477Z Brassica rapa HOM05D004305 ORTHO05D005159 9.2e-11 72.4 419 28.9
CARHR178780 Cardamine hirsuta HOM05D004305 ORTHO05D005159 9.2e-11 72.4 414 26.3
FAN21G2878 Fragaria x ananassa HOM05D004305 ORTHO05D005159 1.2e-10 72.0 431 28.5
unitig_32.g11679 Utricularia gibba HOM05D004305 ORTHO05D005159 1.2e-10 72.0 152 35.5
CiPaw.09G142800 Carya illinoinensis HOM05D004305 ORTHO05D005159 2.0e-10 71.2 170 34.7
THA.LOC104806249 Tarenaya hassleriana HOM05D004305 ORTHO05D005159 2.0e-10 71.2 425 25.9
FAN16G1832 Fragaria x ananassa HOM05D004305 ORTHO05D005159 2.7e-10 70.9 456 27.6
Thhalv10025304m.g Eutrema salsugineum HOM05D004305 ORTHO05D005159 3.5e-10 70.5 439 27.3
Nn1g07139 Nelumbo nucifera HOM05D004305 ORTHO05D005159 3.5e-10 70.5 96 43.8
CARHR227440 Cardamine hirsuta HOM05D004305 ORTHO05D005159 4.6e-10 70.1 424 27.6
CsaV3_6G052500 Cucumis sativus L. HOM05D004305 ORTHO05D005159 7.8e-10 69.3 437 25.6
Sed0024509 Sechium edule HOM05D004305 ORTHO05D005159 7.8e-10 69.3 419 26.5
BcaC01g00679 Brassica carinata HOM05D004305 ORTHO05D005159 1.3e-09 68.6 407 28.5
C03p83040 Brassica napus HOM05D004305 ORTHO05D005159 1.3e-09 68.6 407 28.5
Medtr4g094532 Medicago truncatula HOM05D004305 ORTHO05D005159 1.3e-09 68.6 415 26.0
Sp2g09190 Schrenkiella parvula HOM05D004305 ORTHO05D005159 3.0e-09 67.4 403 25.1
PGR083G0011 Punica granatum HOM05D004305 ORTHO05D005159 3.9e-09 67.0 194 31.4
THA.LOC104812214 Tarenaya hassleriana HOM05D004305 ORTHO05D005159 6.6e-09 66.2 175 33.1
Actinidia32347 Actinidia chinensis HOM05D004305 ORTHO05D005159 8.6e-09 65.9 465 24.9
Sp7g18970 Schrenkiella parvula HOM05D004305 ORTHO05D005159 1.5e-08 65.1 459 26.6
SHI24805 Sapria himalayana HOM05D004305 ORTHO05D005159 4.3e-08 63.5 60 53.3
FAN25G2552 Fragaria x ananassa HOM05D004305 ORTHO05D005159 5.6e-08 63.2 188 33.5
CDE02G2479 Ceratophyllum demersum HOM05D006189 ORTHO05D007765 3.6e-07 60.5 159 32.1
Haze_05867 Corylus avellana HOM05D004305 ORTHO05D005159 3.6e-07 60.5 431 25.5
AL8G15540 Arabidopsis lyrata HOM05D004305 ORTHO05D005159 6.2e-07 59.7 398 25.9
BraA06t27598Z Brassica rapa HOM05D004305 ORTHO05D005159 8.0e-07 59.3 182 32.4
EL10Ac4g07786 Beta vulgaris HOM05D023924 ORTHO05D023401 1.4e-06 58.5 58 55.2
C07p27080 Brassica napus HOM05D004305 ORTHO05D005159 1.8e-06 58.2 170 30.0
Sed0021635 Sechium edule HOM05D004305 ORTHO05D005159 1.8e-06 58.2 297 27.3
AUR62014849 Chenopodium quinoa HOM05D002349 ORTHO05D002464 2.3e-06 57.8 76 44.7
PSO675G0053 Papaver somniferum HOM05D004305 ORTHO05D005159 2.3e-06 57.8 474 23.6
Nn2g11492 Nelumbo nucifera HOM05D004305 ORTHO05D005159 3.1e-06 57.4 57 50.9
HPP92_013922 Vanilla planifolia HOM05D004305 ORTHO05D005159 3.1e-06 57.4 270 27.8
Ah.04g165990 Amaranthus hybridus HOM05D023924 ORTHO05D023401 4.0e-06 57.0 114 38.6
BolC7t43238H Brassica oleracea HOM05D004305 ORTHO05D005159 4.0e-06 57.0 166 30.1
Carub.0008s0412 Capsella rubella HOM05D004305 ORTHO05D005159 4.0e-06 57.0 169 29.0
BcaC06g34566 Brassica carinata HOM05D004305 ORTHO05D005159 5.2e-06 56.6 170 29.4
AT5G44350 Arabidopsis thaliana HOM05D004305 ORTHO05D005159 8.9e-06 55.8 395 26.3


User provided reference genes

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