Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g022870.4 Solanum lycopersicum HOM05D005129 ORTHO05D005585 0.0e+00 2186.4 1299 100.0
Sopen02g006450 Solanum pennellii HOM05D005129 ORTHO05D005585 0.0e+00 2053.9 1421 88.5
Nitab4.5_0000076g0130 Nicotiana tabacum HOM05D005129 ORTHO05D005585 0.0e+00 1463.7 1433 66.4
Nitab4.5_0002094g0030 Nicotiana tabacum HOM05D005129 ORTHO05D005585 0.0e+00 1369.4 1420 64.8
CAN.G39.32 Capsicum annuum HOM05D005129 ORTHO05D000007 0.0e+00 1320.1 1290 67.3
Peaxi162Scf01909g00118 Petunia axillaris HOM05D005129 ORTHO05D005585 0.0e+00 1316.6 1417 58.7
Solyc07g041330.3 Solanum lycopersicum HOM05D005129 ORTHO05D005585 0.0e+00 1274.2 907 76.1
Sopen07g020720 Solanum pennellii HOM05D005129 ORTHO05D005585 0.0e+00 1147.5 707 84.6
Haze_05902 Corylus avellana HOM05D005129 ORTHO05D005585 2.3e-132 478.0 1454 34.0
Cfa000799 Carpinus fangiana HOM05D005129 ORTHO05D005585 8.9e-129 466.1 1453 35.9
CSS0016153 Camellia sinensis var. sinensis HOM05D005129 ORTHO05D005585 4.2e-126 457.2 1217 33.9
PGSC0003DMG400003904 Solanum tuberosum HOM05D009171 ORTHO05D000440 2.0e-120 438.3 252 88.9
QL05p063822 Quercus lobata HOM05D005129 ORTHO05D005585 2.4e-118 431.4 1453 34.5
Cc09_g07500 Coffea canephora HOM05D005129 ORTHO05D005585 7.9e-117 426.4 1188 31.4
Oeu046929.1 Olea europaea HOM05D005129 ORTHO05D005585 5.6e-115 420.2 855 37.5
TAR626G1389 Trochodendron aralioides HOM05D005129 ORTHO05D005585 1.1e-110 406.0 1126 30.8
Potri.001G463700 Populus trichocarpa HOM05D005129 ORTHO05D005585 6.0e-109 400.2 1116 31.5
Sopen07g020710 Solanum pennellii HOM05D005129 ORTHO05D005585 1.9e-107 395.2 532 63.5
Dinv27170 Davidia involucrata HOM05D005129 ORTHO05D005585 5.8e-104 383.6 807 36.6
Thecc.06G015200 Theobroma cacao HOM05D005129 ORTHO05D005585 1.7e-103 382.1 1216 31.7
Gorai.009G117400 Gossypium raimondii HOM05D005129 ORTHO05D005585 5.1e-100 370.5 1183 30.1
Rhsim06G0213800 Rhododendron simsii HOM05D005129 ORTHO05D005585 5.1e-100 370.5 1461 32.6
Migut.M00948 Erythranthe guttata HOM05D005129 ORTHO05D005585 3.3e-99 367.9 1061 32.1
Ciclev10014031m.g Citrus clementina HOM05D005129 ORTHO05D005585 5.7e-99 367.1 1579 31.9
Gohir.A05G112850 Gossypium hirsutum HOM05D005129 ORTHO05D005585 8.2e-98 363.2 1187 29.7
Manes.06G058900 Manihot esculenta HOM05D005129 ORTHO05D005585 1.4e-97 362.5 1280 27.7
Atru.chr3.3029 Acer truncatum HOM05D005129 ORTHO05D005585 2.4e-97 361.7 859 34.0
Potri.011G161901 Populus trichocarpa HOM05D005129 ORTHO05D005585 1.5e-96 359.0 1225 29.5
Cpa.g.sc166.48 Carica papaya HOM05D005129 ORTHO05D005585 3.8e-95 354.4 1084 29.5
Lj1C1160T1 Lonicera japonica HOM05D005129 ORTHO05D005585 5.5e-94 350.5 1219 28.2
Gorai.011G007900 Gossypium raimondii HOM05D005129 ORTHO05D005585 1.2e-93 349.4 1067 30.0
Sabra11G0141700 Salix brachista HOM05D005129 ORTHO05D005585 1.6e-93 349.0 1246 28.0
SalBow8G1057 Salvia bowleyana HOM05D005129 ORTHO05D005585 2.7e-93 348.2 1191 32.1
Gohir.A10G007300 Gossypium hirsutum HOM05D005129 ORTHO05D005585 6.1e-93 347.1 1170 29.0
Gohir.D10G007200 Gossypium hirsutum HOM05D005129 ORTHO05D005585 3.9e-92 344.4 1068 29.8
Rhsim03G0093400 Rhododendron simsii HOM05D005129 ORTHO05D005585 3.9e-92 344.4 1183 29.7
TAR633G0821 Trochodendron aralioides HOM05D005129 ORTHO05D005585 1.5e-91 342.4 690 34.9
RcHm_v2.0_Chr5g0017511 Rosa chinensis HOM05D005129 ORTHO05D005585 5.7e-91 340.5 964 30.6
GSVIVG01035591001 Vitis vinifera HOM05D005129 ORTHO05D005585 1.1e-89 336.3 745 34.9
LjContig00049g0025087 Lotus japonicus HOM05D005129 ORTHO05D005585 1.4e-89 335.9 978 30.0
Glyma.14G032500 Glycine max HOM05D005129 ORTHO05D005585 2.0e-88 332.0 1080 28.5
vmacro03361 Vaccinium macrocarpon HOM05D005129 ORTHO05D005585 2.6e-88 331.6 1444 32.1
MBI18_g10016_MAGBIO Magnolia biondii HOM05D005129 ORTHO05D005585 5.5e-86 323.9 1156 28.2
Prupe.4G095800 Prunus persica HOM05D005129 ORTHO05D005585 1.2e-85 322.8 866 32.1
Lalb_Chr04g0249051 Lupinus albus HOM05D005129 ORTHO05D005585 4.6e-85 320.9 998 30.3
Glyma.02G281900 Glycine max HOM05D005129 ORTHO05D005585 2.3e-84 318.5 1040 28.5
Phvul.008G197100 Phaseolus vulgaris HOM05D005129 ORTHO05D005585 1.5e-83 315.8 654 33.0
ClCG03G008270 Citrullus lanatus HOM05D005129 ORTHO05D005585 2.8e-82 311.6 1485 31.3
VMungo0647G0154 Vigna mungo HOM05D005129 ORTHO05D005585 4.8e-82 310.8 656 34.8
FAN11G1468 Fragaria x ananassa HOM05D005129 ORTHO05D005585 2.4e-81 308.5 1496 31.8
SGA_v2.0_scaffold1G00142 Striga asiatica HOM05D005129 ORTHO05D005585 2.4e-81 308.5 1037 29.4
MD10G1247500 Malus domestica HOM05D005129 ORTHO05D005585 3.1e-81 308.1 1462 31.7
CiPaw.09G143100 Carya illinoinensis HOM05D005129 ORTHO05D005585 6.9e-81 307.0 774 32.8
Gohir.D05G113300 Gossypium hirsutum HOM05D005129 ORTHO05D005585 2.6e-80 305.1 671 34.0
arahy.Tifrunner.gnm1.ann1.40GDTE Arachis hypogaea HOM05D005129 ORTHO05D005585 1.2e-77 296.2 1397 29.8
Nn1g08322 Nelumbo nucifera HOM05D005129 ORTHO05D005585 2.1e-77 295.4 812 31.9
MD05G1268800 Malus domestica HOM05D005129 ORTHO05D005585 2.7e-77 295.0 1017 28.7
FvH4_3g10781 Fragaria vesca HOM05D005129 ORTHO05D005585 7.9e-77 293.5 1017 28.3
CsaV3_1G037120 Cucumis sativus L. HOM05D005129 ORTHO05D005585 2.3e-76 292.0 1500 27.6
DCAR_003834 Daucus carota HOM05D005129 ORTHO05D005585 2.3e-76 292.0 978 29.3
SGA_v2.0_scaffold333G49012 Striga asiatica HOM05D005129 ORTHO05D005585 2.3e-76 292.0 1270 32.4
PSO541G3520 Papaver somniferum HOM05D005129 ORTHO05D005585 2.6e-75 288.5 1095 28.8
MELO3C002837.2 Cucumis melo HOM05D005129 ORTHO05D005585 3.3e-75 288.1 1474 27.1
FAN16G1113 Fragaria x ananassa HOM05D005129 ORTHO05D005585 3.3e-75 288.1 852 29.6
arahy.Tifrunner.gnm1.ann1.LUZ6WJ Arachis hypogaea HOM05D005129 ORTHO05D005585 7.4e-75 287.0 1393 29.1
CANSAT35G1118 Cannabis sativa HOM05D005129 ORTHO05D005585 7.4e-75 287.0 1460 33.6
FAN21G1521 Fragaria x ananassa HOM05D005129 ORTHO05D005585 1.7e-74 285.8 835 30.5
Medtr2g031380 Medicago truncatula HOM05D005129 ORTHO05D005585 3.1e-73 281.6 786 32.7
Sed0027997 Sechium edule HOM05D005129 ORTHO05D005585 3.1e-73 281.6 1481 29.2
FAN25G2195 Fragaria x ananassa HOM05D005129 ORTHO05D005585 4.1e-73 281.2 852 29.7
TWI63G1468 Tripterygium wilfordii HOM05D005129 ORTHO05D005585 4.1e-73 281.2 1408 32.7
PGR083G2529 Punica granatum HOM05D005129 ORTHO05D005585 1.7e-71 275.8 1438 28.2
TPR.G22269 Trifolium pratense HOM05D005129 ORTHO05D005585 1.5e-70 272.7 802 31.8
THA.LOC104812690 Tarenaya hassleriana HOM05D005129 ORTHO05D005585 1.2e-69 269.6 1468 26.3
Lsat_1_v5_gn_3_43520 Lactuca sativa HOM05D005129 ORTHO05D005585 1.0e-68 266.5 1392 25.4
Sc19g0000270 Simmondsia chinensis HOM05D005129 ORTHO05D005585 8.2e-66 256.9 1442 29.8
Aqoxy1G02020_Aqoxy1G02021 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 2.4e-65 255.4 679 30.8
ECA246G0263 Erigeron canadensis HOM05D005129 ORTHO05D005585 5.3e-65 254.2 1339 27.9
CiPaw.16G039600 Carya illinoinensis HOM05D005129 ORTHO05D005585 7.7e-64 250.4 808 28.6
ATR0763G237 Amborella trichopoda HOM05D005129 ORTHO05D005585 4.2e-62 244.6 689 30.2
Ca_00871_v3 Cicer arietinum L. HOM05D005129 ORTHO05D005585 1.6e-61 242.7 806 30.3
BcaB02g09508 Brassica carinata HOM05D005129 ORTHO05D005585 1.8e-60 239.2 998 27.0
HanXRQChr03g0080681 Helianthus annuus HOM05D005129 ORTHO05D005585 3.0e-60 238.4 1443 27.4
BolC4t27871H Brassica oleracea HOM05D005129 ORTHO05D005585 3.4e-59 235.0 958 26.4
AUR62028142 Chenopodium quinoa HOM05D005129 ORTHO05D005585 4.4e-59 234.6 1146 24.8
BcaC02g11559 Brassica carinata HOM05D005129 ORTHO05D005585 1.3e-58 233.0 1022 26.6
AUR62005921 Chenopodium quinoa HOM05D005129 ORTHO05D005585 3.7e-58 231.5 1146 24.4
Sp4g17070 Schrenkiella parvula HOM05D005129 ORTHO05D005585 8.3e-58 230.3 1048 25.6
AT2G34780 Arabidopsis thaliana HOM05D005129 ORTHO05D005585 2.4e-57 228.8 1046 26.2
BraA05t20033Z Brassica rapa HOM05D005129 ORTHO05D005585 5.9e-56 224.2 1012 25.6
AL4G30770 Arabidopsis lyrata HOM05D005129 ORTHO05D005585 1.3e-55 223.0 1031 26.2
BolC4t22987H Brassica oleracea HOM05D005129 ORTHO05D005585 2.3e-55 222.2 1024 25.8
unitig_748.g7646 Utricularia gibba HOM05D005129 ORTHO05D005585 3.8e-55 221.5 925 25.7
C04p13980 Brassica napus HOM05D005129 ORTHO05D005585 5.0e-55 221.1 1014 25.6
BcaB06g28799 Brassica carinata HOM05D005129 ORTHO05D005585 1.4e-52 213.0 959 24.7
CARHR128940 Cardamine hirsuta HOM05D005129 ORTHO05D005585 1.4e-52 213.0 649 28.4
Aa31LG10G6520 Aethionema arabicum HOM05D005129 ORTHO05D005585 5.2e-52 211.1 643 28.6
A05p10880 Brassica napus HOM05D005129 ORTHO05D005585 1.5e-51 209.5 1392 23.7
Ah.13g071200 Amaranthus hybridus HOM05D005129 ORTHO05D005585 2.6e-51 208.8 987 25.2
Thhalv10016158m.g Eutrema salsugineum HOM05D005129 ORTHO05D005585 3.4e-51 208.4 1424 23.2
EL10Ac3g05106 Beta vulgaris HOM05D005129 ORTHO05D005585 2.8e-45 188.7 995 25.9
Carub.0004s1647 Capsella rubella HOM05D005129 ORTHO05D005585 6.1e-45 187.6 638 27.3
FAN25G0785 Fragaria x ananassa HOM05D005129 ORTHO05D005585 1.0e-44 186.8 768 25.9
BcaC01g05762 Brassica carinata HOM05D005129 ORTHO05D005585 5.2e-44 184.5 710 25.9
Aqoxy7G00170 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 1.5e-43 183.0 397 33.0
Aqoxy7G00166 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 2.0e-43 182.6 397 33.0
Aqoxy88s004 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 2.0e-43 182.6 397 33.0
Hund21086 Selenicereus undatus HOM05D005129 ORTHO05D005585 3.4e-43 181.8 1507 24.3
Dinv27171 Davidia involucrata HOM05D005129 ORTHO05D005585 2.1e-37 162.5 228 41.2
MELO3C033745.2 Cucumis melo HOM05D005129 ORTHO05D005585 1.8e-36 159.5 682 26.8
Ah.13g069630 Amaranthus hybridus HOM05D005129 ORTHO05D005585 7.5e-35 154.1 380 30.8
Zm00001eb152060 Zea mays HOM05D005129 ORTHO05D005585 2.5e-30 139.0 1051 23.8
CDE06G2236 Ceratophyllum demersum HOM05D005129 ORTHO05D005585 4.3e-30 138.3 727 23.1
C03p22490 Brassica napus HOM05D002581 ORTHO05D002828 1.2e-29 136.7 757 23.2
Psat1g165880 Pisum sativum HOM05D005129 ORTHO05D005585 1.8e-28 132.9 774 25.8
TPR.G8782 Trifolium pratense HOM05D000048 ORTHO05D004674 6.4e-26 124.4 291 32.6
SHI24815 Sapria himalayana HOM05D005129 ORTHO05D005585 7.1e-25 120.9 479 28.6
Actinidia00605 Actinidia chinensis HOM05D005129 ORTHO05D005585 1.6e-24 119.8 139 43.9
Medtr5g090200 Medicago truncatula HOM05D005129 ORTHO05D005585 4.6e-24 118.2 293 31.7
Dinv27169 Davidia involucrata HOM05D005129 ORTHO05D005585 2.8e-21 109.0 121 49.6
Os01g0768700 Oryza sativa ssp. japonica HOM05D005129 ORTHO05D005585 6.2e-21 107.8 372 27.2
C04p63980 Brassica napus HOM05D002581 ORTHO05D002828 1.1e-20 107.1 315 29.5
BraA04t18160Z Brassica rapa HOM05D002581 ORTHO05D002828 1.4e-20 106.7 307 29.6
TAR633G2434 Trochodendron aralioides HOM05D005129 ORTHO05D005585 4.4e-19 101.7 512 23.0
A04p26560 Brassica napus HOM05D002581 ORTHO05D002828 1.9e-17 96.3 314 28.3
Eucgr.D00091 Eucalyptus grandis HOM05D005129 ORTHO05D005585 1.6e-16 93.2 126 42.1
GSVIVG01035592001 Vitis vinifera HOM05D005129 ORTHO05D005585 3.5e-16 92.0 510 40.0
Eucgr.D00092 Eucalyptus grandis HOM05D005129 ORTHO05D005585 1.3e-15 90.1 865 33.8
HPP92_022551 Vanilla planifolia HOM05D005129 ORTHO05D005585 5.1e-15 88.2 149 32.9
Atru.chr3.3028 Acer truncatum HOM05D005129 ORTHO05D005585 1.5e-14 86.7 121 44.6
Rhsim13G0123000 Rhododendron simsii HOM05D005129 ORTHO05D005585 1.9e-14 86.3 101 46.5
PSO675G1291 Papaver somniferum HOM05D005129 ORTHO05D005585 2.5e-14 85.9 124 41.1
Gohir.D05G113400 Gossypium hirsutum HOM05D005129 ORTHO05D005585 9.6e-14 84.0 126 41.3
PSO541G6300 Papaver somniferum HOM05D005129 ORTHO05D005585 1.1e-12 80.5 100 44.0
HPP92_022552 Vanilla planifolia HOM05D005129 ORTHO05D005585 5.2e-12 78.2 298 28.9
MELO3C005104.2 Cucumis melo HOM05D005129 ORTHO05D005585 9.9e-11 73.9 112 34.8
PSO541G4161 Papaver somniferum HOM05D026995 ORTHO05D005585 6.0e-08 64.7 100 39.0
TPR.G125 Trifolium pratense HOM05D005129 ORTHO05D005585 6.0e-08 64.7 88 42.0
SHI24814 Sapria himalayana HOM05D005129 ORTHO05D005585 5.1e-07 61.6 250 27.6
VMungo1080G1105 Vigna mungo HOM05D000424 ORTHO05D002854 1.1e-06 60.5 112 34.8
Carub.0004s1646 Capsella rubella HOM05D005129 ORTHO05D005585 1.5e-06 60.1 119 32.8
PSO675G3866 Papaver somniferum HOM05D026995 ORTHO05D005585 1.5e-06 60.1 123 34.1


User provided reference genes

Program Settings