Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g021770.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 5.3e-90 334.3 169 100.0
CAN.G1167.11 Capsicum annuum HOM05D004537 ORTHO05D005492 3.6e-78 295.0 159 92.5
CAN.G78.1 Capsicum annuum HOM05D004537 ORTHO05D005492 3.6e-78 295.0 159 92.5
Solyc00g500186.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 3.6e-78 295.0 159 92.5
Solyc00g500250.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 3.6e-78 295.0 159 92.5
Solyc00g500349.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 3.6e-78 295.0 159 92.5
Sopen05g012670 Solanum pennellii HOM05D004537 ORTHO05D005492 3.6e-78 295.0 159 92.5
PGSC0003DMG400002971 Solanum tuberosum HOM05D004537 ORTHO05D005492 3.6e-78 295.0 159 92.5
CAN.G1109.10 Capsicum annuum HOM05D004537 ORTHO05D005492 5.1e-77 291.2 159 91.8
QL10p061777 Quercus lobata HOM05D004537 ORTHO05D005492 1.5e-76 289.7 159 91.2
Cpa.g.sc263.4 Carica papaya HOM05D004537 ORTHO05D005492 1.3e-75 286.6 159 91.2
Gorai.001G162500 Gossypium raimondii HOM05D004537 ORTHO05D005492 6.3e-75 284.3 159 90.6
ATMG01360 Arabidopsis thaliana HOM05D004537 ORTHO05D005492 8.2e-75 283.9 159 89.9
A04p09350 Brassica napus HOM05D004537 ORTHO05D005492 8.2e-75 283.9 159 89.9
BolSC28t60311H Brassica oleracea HOM05D004537 ORTHO05D005492 8.2e-75 283.9 159 89.9
BolSC28t60367H Brassica oleracea HOM05D004537 ORTHO05D005492 8.2e-75 283.9 159 89.9
BraSC159t45726Z Brassica rapa HOM05D004537 ORTHO05D005492 8.2e-75 283.9 159 89.9
BraSC48t46236Z Brassica rapa HOM05D004537 ORTHO05D005492 8.2e-75 283.9 159 89.9
CANSAT16G0002 Cannabis sativa HOM05D004537 ORTHO05D005492 8.2e-75 283.9 159 89.9
CARHR283530 Cardamine hirsuta HOM05D004537 ORTHO05D005492 8.2e-75 283.9 159 89.9
Nn1g10090 Nelumbo nucifera HOM05D004537 ORTHO05D005492 8.2e-75 283.9 159 89.9
SabraMtG0005600 Salix brachista HOM05D004537 ORTHO05D005492 8.2e-75 283.9 159 89.9
Sc08g0004810 Simmondsia chinensis HOM05D004537 ORTHO05D005492 8.2e-75 283.9 159 89.9
RcHm_v2.0_Chr6g0256731 Rosa chinensis HOM05D004537 ORTHO05D005492 1.1e-74 283.5 159 89.3
Solyc07g019510.4 Solanum lycopersicum HOM05D004537 ORTHO05D005492 1.4e-74 283.1 159 88.7
Ah.00g237940 Amaranthus hybridus HOM05D004537 ORTHO05D005492 1.8e-74 282.7 159 89.3
Sed0020696 Sechium edule HOM05D004537 ORTHO05D005492 1.8e-74 282.7 159 89.3
Actinidia34915 Actinidia chinensis HOM05D004537 ORTHO05D005492 2.4e-74 282.3 159 89.9
arahy.Tifrunner.gnm1.ann1.FSQ0ED Arachis hypogaea HOM05D004537 ORTHO05D005492 4.1e-74 281.6 159 89.9
arahy.Tifrunner.gnm1.ann1.JYE7Y9 Arachis hypogaea HOM05D004537 ORTHO05D005492 4.1e-74 281.6 159 89.9
arahy.Tifrunner.gnm1.ann1.QL9R2N Arachis hypogaea HOM05D004537 ORTHO05D005492 4.1e-74 281.6 159 89.9
Ca_07436_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 4.1e-74 281.6 159 89.9
Ca_30901_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 4.1e-74 281.6 159 89.9
LjContig00315g0003687 Lotus japonicus HOM05D004537 ORTHO05D005492 4.1e-74 281.6 159 89.9
DCAR_032457 Daucus carota HOM05D004537 ORTHO05D005492 1.5e-73 279.6 159 89.3
HanXRQChr10g0310851 Helianthus annuus HOM05D004537 ORTHO05D005492 2.0e-73 279.3 159 88.7
HanXRQChr14g0433461 Helianthus annuus HOM05D004537 ORTHO05D005492 2.0e-73 279.3 159 88.7
HanXRQMTg0579341 Helianthus annuus HOM05D004537 ORTHO05D005492 2.0e-73 279.3 159 88.7
Hma1.2p1_0136F.1_g062006 Hydrangea macrophylla HOM05D004537 ORTHO05D005492 7.7e-73 277.3 159 88.7
Dinv06725 Davidia involucrata HOM05D004537 ORTHO05D005492 1.0e-72 276.9 159 88.7
HanXRQChr04g0127221 Helianthus annuus HOM05D004537 ORTHO05D005492 1.0e-72 276.9 159 88.1
Nitab4.5_0001127g0230 Nicotiana tabacum HOM05D004537 ORTHO05D005492 6.5e-72 274.2 161 84.5
Solyc11g063610.3 Solanum lycopersicum HOM05D004537 ORTHO05D005492 1.1e-71 273.5 159 87.4
unitig_87.g28001 Utricularia gibba HOM05D004537 ORTHO05D005492 1.9e-71 272.7 148 93.9
QL04p031979 Quercus lobata HOM05D004537 ORTHO05D005492 7.2e-71 270.8 159 85.5
Sed0024638 Sechium edule HOM05D004537 ORTHO05D005492 7.7e-65 250.8 139 92.1
RcHm_v2.0_MTg0498791 Rosa chinensis HOM05D004537 ORTHO05D005492 5.0e-64 248.1 146 88.4
MD13G1127000 Malus domestica HOM05D004537 ORTHO05D005492 1.2e-62 243.4 137 92.0
PSO384G3370 Papaver somniferum HOM05D004537 ORTHO05D005492 3.6e-62 241.9 133 94.0
Gorai.013G213100 Gossypium raimondii HOM05D004537 ORTHO05D005492 6.7e-61 237.7 149 81.9
SEGI_28485 Sequoiadendron giganteum HOM05D004537 ORTHO05D005492 1.6e-57 226.5 150 81.3
HanXRQChr04g0127251 Helianthus annuus HOM05D004537 ORTHO05D005492 6.5e-56 221.1 159 73.6
ClCG04G003500 Citrullus lanatus HOM05D004537 ORTHO05D005492 3.6e-54 215.3 161 74.5
arahy.Tifrunner.gnm1.ann1.19WC2D Arachis hypogaea HOM05D004537 ORTHO05D005492 9.7e-52 207.2 159 71.1
Sp3g25790 Schrenkiella parvula HOM05D004537 ORTHO05D005492 3.1e-50 202.2 117 87.2
Sed0009736 Sechium edule HOM05D004537 ORTHO05D005492 7.0e-50 201.1 111 92.8
Psat3g040160 Pisum sativum HOM05D004537 ORTHO05D005492 2.7e-49 199.1 109 93.6
Lalb_Chr00c21g0405801 Lupinus albus HOM05D004537 ORTHO05D005492 7.7e-49 197.6 134 79.1
BraSC48t46325Z Brassica rapa HOM05D004537 ORTHO05D005492 9.4e-47 190.7 110 90.0
CDE02G4726 Ceratophyllum demersum HOM05D004537 ORTHO05D005492 5.2e-45 184.9 159 64.8
COL.COLO4_04173 Corchorus olitorius HOM05D004537 ORTHO05D005492 4.8e-43 178.3 159 62.3
CAN.G505.7 Capsicum annuum HOM05D004537 ORTHO05D005492 2.9e-40 169.1 114 78.1
SHI27477 Sapria himalayana HOM05D004537 ORTHO05D005492 3.8e-40 168.7 122 70.5
Nitab4.5_0000866g0210 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.2e-36 157.1 109 79.8
SMO053G0009 Selaginella moellendorffii HOM05D004537 ORTHO05D005492 1.7e-35 153.3 152 61.2
Aqoxy12s002 Aquilegia oxysepala HOM05D004537 ORTHO05D005492 9.2e-34 147.5 80 87.5
Nitab4.5_0001761g0020 Nicotiana tabacum HOM05D004537 ORTHO05D005492 3.5e-33 145.6 80 85.0
Haze_27145 Corylus avellana HOM05D004537 ORTHO05D005492 4.3e-31 138.7 134 59.0
Lalb_Chr20g0115011 Lupinus albus HOM05D004537 ORTHO05D005492 5.6e-31 138.3 112 69.6
Nitab4.5_0000019g0180 Nicotiana tabacum HOM05D004537 ORTHO05D005492 8.0e-30 134.4 82 79.3
LjContig00315g0010412 Lotus japonicus HOM05D004537 ORTHO05D005492 4.0e-29 132.1 159 49.1
SHI20133 Sapria himalayana HOM05D004537 ORTHO05D005492 5.2e-29 131.7 96 67.7
AUR62044038 Chenopodium quinoa HOM05D004537 ORTHO05D005492 4.4e-28 128.6 69 94.2
TPR.G4012 Trifolium pratense HOM05D004537 ORTHO05D005492 6.4e-27 124.8 67 94.0
Eucgr.E01613 Eucalyptus grandis HOM05D004537 ORTHO05D005492 1.9e-26 123.2 68 91.2
CAN.G889.6 Capsicum annuum HOM05D004537 ORTHO05D005492 2.4e-26 122.9 68 92.6
Gohir.D04G096416 Gossypium hirsutum HOM05D004537 ORTHO05D005492 6.0e-25 118.2 124 55.6
Nitab4.5_0001234g0100 Nicotiana tabacum HOM05D004537 ORTHO05D005492 2.3e-24 116.3 92 72.8
SHI35293 Sapria himalayana HOM05D004537 ORTHO05D005492 2.2e-19 99.8 148 45.3
CAN.G61.11 Capsicum annuum HOM05D004537 ORTHO05D005492 8.3e-19 97.8 67 74.6
Medtr0024s0110 Medicago truncatula HOM05D004537 ORTHO05D005492 1.9e-15 86.7 43 95.3
Nitab4.5_0000592g0100 Nicotiana tabacum HOM05D004537 ORTHO05D005492 2.8e-14 82.8 89 56.2
Haze_27101 Corylus avellana HOM05D004537 ORTHO05D005492 8.9e-13 77.8 90 42.2
RhsimMtG0000400 Rhododendron simsii HOM05D004537 ORTHO05D005492 1.5e-12 77.0 43 76.7
Solyc08g029290.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 2.0e-12 76.6 53 69.8
Haze_27411 Corylus avellana HOM05D004537 ORTHO05D005492 5.8e-12 75.1 83 54.2
SHI26645 Sapria himalayana HOM05D004537 ORTHO05D005492 9.9e-12 74.3 43 76.7
Lalb_Chr11g0071071 Lupinus albus HOM05D004537 ORTHO05D005492 1.3e-11 73.9 43 76.7
Medtr8g106255 Medicago truncatula HOM05D004537 ORTHO05D005492 2.2e-11 73.2 43 74.4
Glyma.03G094400 Glycine max HOM05D004537 ORTHO05D005492 2.9e-11 72.8 43 74.4
GSVIVG01020676001 Vitis vinifera HOM05D004537 ORTHO05D005492 5.4e-10 68.6 36 94.4
ATR1125G006 Amborella trichopoda HOM05D004537 ORTHO05D005492 9.2e-10 67.8 33 90.9
CAN.G999.40 Capsicum annuum HOM05D004537 ORTHO05D005492 1.6e-09 67.0 38 84.2
Nitab4.5_0000161g0030 Nicotiana tabacum HOM05D008163 ORTHO05D010305 3.5e-09 65.9 36 86.1
CAN.G60.10 Capsicum annuum HOM05D004537 ORTHO05D005492 2.1e-06 56.6 39 71.8
Migut.E01634 Erythranthe guttata HOM05D004537 ORTHO05D005492 2.1e-06 56.6 60 53.3
Migut.E00896 Erythranthe guttata HOM05D004537 ORTHO05D005492 4.7e-06 55.5 51 60.8


User provided reference genes

Program Settings