Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g021480.4 Solanum lycopersicum HOM05D003390 ORTHO05D004189 2.7e-80 302.0 156 100.0
Sopen02g005990 Solanum pennellii HOM05D003390 ORTHO05D004189 1.9e-78 295.8 156 98.1
PGSC0003DMG400003171 Solanum tuberosum HOM05D003390 ORTHO05D004189 9.5e-78 293.5 156 96.2
Nitab4.5_0000206g0100 Nicotiana tabacum HOM05D003390 ORTHO05D004189 1.4e-76 289.7 155 94.8
Nitab4.5_0001826g0010 Nicotiana tabacum HOM05D003390 ORTHO05D004189 4.0e-76 288.1 155 94.2
Peaxi162Scf00121g02312 Petunia axillaris HOM05D003390 ORTHO05D004189 4.9e-74 281.2 155 92.3
SGA_v2.0_scaffold333G49014 Striga asiatica HOM05D003390 ORTHO05D004189 2.6e-67 258.8 155 81.3
Cc09_g09610 Coffea canephora HOM05D003390 ORTHO05D004189 3.4e-67 258.5 155 82.6
Cpa.g.sc17.128 Carica papaya HOM05D003390 ORTHO05D004189 9.9e-67 256.9 155 82.6
Rhsim12G0071900 Rhododendron simsii HOM05D003390 ORTHO05D004189 2.9e-66 255.4 155 80.0
QL05p060163 Quercus lobata HOM05D003390 ORTHO05D004189 6.4e-66 254.2 155 79.4
TWI09G1133 Tripterygium wilfordii HOM05D003390 ORTHO05D004189 1.9e-65 252.7 155 81.3
DCAR_005073 Daucus carota HOM05D003390 ORTHO05D004189 3.2e-65 251.9 155 77.4
FAN16G0009 Fragaria x ananassa HOM05D003390 ORTHO05D004189 3.2e-65 251.9 155 80.0
MSTRG.7463 Avicennia marina HOM05D003390 ORTHO05D004189 7.1e-65 250.8 152 83.6
Psat1g170120 Pisum sativum HOM05D003390 ORTHO05D004189 7.1e-65 250.8 155 80.6
Migut.M00950 Erythranthe guttata HOM05D003390 ORTHO05D004189 9.3e-65 250.4 156 80.1
FAN21G1255 Fragaria x ananassa HOM05D003390 ORTHO05D004189 9.3e-65 250.4 155 79.4
FvH4_3g06290 Fragaria vesca HOM05D003390 ORTHO05D004189 1.2e-64 250.0 155 80.0
FAN11G2053 Fragaria x ananassa HOM05D003390 ORTHO05D004189 1.2e-64 250.0 155 80.0
Thecc.06G156600 Theobroma cacao HOM05D003390 ORTHO05D004189 1.2e-64 250.0 155 79.4
Eucgr.D00339 Eucalyptus grandis HOM05D003390 ORTHO05D004189 2.1e-64 249.2 155 78.7
RcHm_v2.0_Chr5g0013021 Rosa chinensis HOM05D003390 ORTHO05D004189 2.7e-64 248.8 155 78.1
Lalb_Chr18g0057721 Lupinus albus HOM05D003390 ORTHO05D004189 3.5e-64 248.4 155 78.7
TAR386G0005 Trochodendron aralioides HOM05D003390 ORTHO05D004189 3.5e-64 248.4 154 82.5
TAR627G0573 Trochodendron aralioides HOM05D003390 ORTHO05D004189 3.5e-64 248.4 154 82.5
VMungo0540G2227 Vigna mungo HOM05D003390 ORTHO05D004189 3.5e-64 248.4 155 80.0
Prupe.4G074800 Prunus persica HOM05D003390 ORTHO05D004189 4.6e-64 248.1 155 80.6
SalBow8G0013 Salvia bowleyana HOM05D003390 ORTHO05D002303 4.6e-64 248.1 155 80.6
Ca_11357_v3 Cicer arietinum L. HOM05D003390 ORTHO05D004189 6.0e-64 247.7 155 78.7
Duzib192G0036 Durio zibethinus HOM05D003390 ORTHO05D004189 1.3e-63 246.5 155 77.4
MD05G1290900 Malus domestica HOM05D003390 ORTHO05D004189 1.3e-63 246.5 155 77.4
Dinv30696 Davidia involucrata HOM05D003390 ORTHO05D004189 1.7e-63 246.1 155 80.6
Haze_05526 Corylus avellana HOM05D003390 ORTHO05D004189 2.3e-63 245.7 155 79.4
Glyma.15G125900 Glycine max HOM05D003390 ORTHO05D004189 2.3e-63 245.7 155 79.4
FAN25G2602 Fragaria x ananassa HOM05D003390 ORTHO05D004189 3.0e-63 245.4 155 78.7
Oeu001052.1 Olea europaea HOM05D003390 ORTHO05D004189 3.9e-63 245.0 155 79.4
Lj1A1183G65 Lonicera japonica HOM05D003390 ORTHO05D004189 5.1e-63 244.6 146 82.2
Cfa000990 Carpinus fangiana HOM05D003390 ORTHO05D004189 6.6e-63 244.2 155 79.4
Lj6g0006873 Lotus japonicus HOM05D003390 ORTHO05D004189 6.6e-63 244.2 155 77.4
Sabra16G0232300 Salix brachista HOM05D003390 ORTHO05D004189 8.7e-63 243.8 155 77.4
TPR.G17505 Trifolium pratense HOM05D003390 ORTHO05D004189 1.1e-62 243.4 155 79.4
BcaC01g00142 Brassica carinata HOM05D003390 ORTHO05D004189 1.9e-62 242.7 155 80.0
C03p76240 Brassica napus HOM05D003390 ORTHO05D004189 1.9e-62 242.7 155 80.0
BolC3t19880H Brassica oleracea HOM05D003390 ORTHO05D004189 1.9e-62 242.7 155 80.0
Ciclev10014753m.g Citrus clementina HOM05D003390 ORTHO05D004189 1.9e-62 242.7 155 80.0
Gohir.D06G205600 Gossypium hirsutum HOM05D003390 ORTHO05D004189 1.9e-62 242.7 155 76.8
Gorai.010G239900 Gossypium raimondii HOM05D003390 ORTHO05D004189 1.9e-62 242.7 155 76.8
Potri.001G353000 Populus trichocarpa HOM05D003390 ORTHO05D004189 1.9e-62 242.7 155 77.4
BcaB03g12182 Brassica carinata HOM05D003390 ORTHO05D004189 2.5e-62 242.3 155 80.0
Gohir.A06G198200 Gossypium hirsutum HOM05D003390 ORTHO05D004189 2.5e-62 242.3 155 76.1
Sp1g25730 Schrenkiella parvula HOM05D003390 ORTHO05D004189 2.5e-62 242.3 155 80.0
Thhalv10007315m.g Eutrema salsugineum HOM05D003390 ORTHO05D004189 3.3e-62 241.9 155 80.6
MD10G1266700 Malus domestica HOM05D003390 ORTHO05D004189 3.3e-62 241.9 155 77.4
MD16G1203400 Malus domestica HOM05D003390 ORTHO05D004189 3.3e-62 241.9 155 77.4
Aa31LG6G5840 Aethionema arabicum HOM05D003390 ORTHO05D004189 4.3e-62 241.5 155 80.6
Phvul.006G132300 Phaseolus vulgaris HOM05D003390 ORTHO05D004189 4.3e-62 241.5 153 77.8
Actinidia39555 Actinidia chinensis HOM05D003390 ORTHO05D004189 9.6e-62 240.4 155 77.4
AL1G43660 Arabidopsis lyrata HOM05D003390 ORTHO05D004189 9.6e-62 240.4 155 79.4
ClCG03G007130 Citrullus lanatus HOM05D003390 ORTHO05D004189 1.3e-61 240.0 155 76.8
MELO3C002711.2 Cucumis melo HOM05D003390 ORTHO05D004189 1.3e-61 240.0 155 76.8
SHI35740 Sapria himalayana HOM05D003390 ORTHO05D004189 1.3e-61 240.0 155 75.5
GSVIVG01021390001 Vitis vinifera HOM05D003390 ORTHO05D004189 1.6e-61 239.6 155 77.4
AT1G29820 Arabidopsis thaliana HOM05D003390 ORTHO05D004189 3.6e-61 238.4 155 78.7
CiPaw.09G127400 Carya illinoinensis HOM05D003390 ORTHO05D004189 4.8e-61 238.0 155 76.1
THA.LOC104820634 Tarenaya hassleriana HOM05D003390 ORTHO05D004189 6.2e-61 237.7 155 79.4
Lj2A310T45 Lonicera japonica HOM05D003390 ORTHO05D004189 1.8e-60 236.1 156 74.4
Manes.17G065600 Manihot esculenta HOM05D003390 ORTHO05D004189 1.8e-60 236.1 144 81.9
PSO135G0210 Papaver somniferum HOM05D003390 ORTHO05D004189 1.8e-60 236.1 155 76.8
CARHR029610 Cardamine hirsuta HOM05D003390 ORTHO05D004189 2.4e-60 235.7 155 78.1
AUR62035789 Chenopodium quinoa HOM05D003390 ORTHO05D004189 3.1e-60 235.3 155 73.5
PGR031G1555 Punica granatum HOM05D003390 ORTHO05D004189 5.3e-60 234.6 144 82.6
ECA234G1186 Erigeron canadensis HOM05D003390 ORTHO05D004189 9.0e-60 233.8 157 75.8
PGR042G1945 Punica granatum HOM05D003390 ORTHO05D004189 9.0e-60 233.8 155 75.5
AUR62027570 Chenopodium quinoa HOM05D003390 ORTHO05D004189 2.6e-59 232.3 155 73.5
CDE08G1393 Ceratophyllum demersum HOM05D003390 ORTHO05D004189 3.4e-59 231.9 155 70.3
Carub.0001s2807 Capsella rubella HOM05D003390 ORTHO05D004189 4.5e-59 231.5 155 76.8
Medtr2g028770 Medicago truncatula HOM05D003390 ORTHO05D004189 7.6e-59 230.7 146 78.8
HanXRQChr16g0525801 Helianthus annuus HOM05D003390 ORTHO05D004189 1.3e-58 229.9 155 74.8
Aqoxy1G01824 Aquilegia oxysepala HOM05D003390 ORTHO05D004189 2.2e-58 229.2 155 73.5
EL10Ac8g19781 Beta vulgaris HOM05D003390 ORTHO05D004189 2.2e-58 229.2 155 70.3
CiPaw.09G127300 Carya illinoinensis HOM05D003390 ORTHO05D004189 2.2e-58 229.2 144 79.2
ATR1131G058 Amborella trichopoda HOM05D003390 ORTHO05D004189 1.4e-57 226.5 156 71.8
Ah.09g232910 Amaranthus hybridus HOM05D003390 ORTHO05D004189 4.2e-57 224.9 152 73.7
A08p24810 Brassica napus HOM05D003390 ORTHO05D004189 1.2e-56 223.4 128 85.9
BraA08t34436Z Brassica rapa HOM05D003390 ORTHO05D004189 1.2e-56 223.4 128 85.9
MBI07_g07829_MAGBIO Magnolia biondii HOM05D003390 ORTHO05D004189 2.1e-56 222.6 155 71.6
Eucgr.A01981 Eucalyptus grandis HOM05D003390 ORTHO05D004189 2.7e-56 222.2 155 73.5
arahy.Tifrunner.gnm1.ann1.0JHG5Q Arachis hypogaea HOM05D003390 ORTHO05D004189 4.6e-56 221.5 146 76.7
arahy.Tifrunner.gnm1.ann1.VAF4MI Arachis hypogaea HOM05D003390 ORTHO05D004189 6.0e-56 221.1 146 76.0
Haze_13511 Corylus avellana HOM05D003390 ORTHO05D004189 6.0e-56 221.1 155 71.0
RcHm_v2.0_Chr2g0151651 Rosa chinensis HOM05D003390 ORTHO05D004189 1.3e-55 219.9 155 74.8
LjContig00049g0028197 Lotus japonicus HOM05D003390 ORTHO05D004189 1.8e-55 219.5 151 74.8
unitig_748.g7439 Utricularia gibba HOM05D003390 ORTHO05D004189 1.8e-55 219.5 143 79.0
Psat2g016080 Pisum sativum HOM05D003390 ORTHO05D004189 3.0e-55 218.8 155 74.8
QL08p044424 Quercus lobata HOM05D003390 ORTHO05D004189 3.0e-55 218.8 155 72.3
vmacro12466 Vaccinium macrocarpon HOM05D003390 ORTHO05D004189 3.0e-55 218.8 155 73.5
arahy.Tifrunner.gnm1.ann1.QBP2NG Arachis hypogaea HOM05D003390 ORTHO05D004189 5.1e-55 218.0 142 76.8
Nitab4.5_0002209g0030 Nicotiana tabacum HOM05D003390 ORTHO05D004189 5.1e-55 218.0 155 72.3
Hund21490 Selenicereus undatus HOM05D003390 ORTHO05D004189 5.1e-55 218.0 150 76.7
TAR626G0692 Trochodendron aralioides HOM05D003390 ORTHO05D004189 5.1e-55 218.0 155 71.6
arahy.Tifrunner.gnm1.ann1.WT2YK3 Arachis hypogaea HOM05D003390 ORTHO05D004189 6.7e-55 217.6 142 76.8
Nitab4.5_0003104g0070 Nicotiana tabacum HOM05D003390 ORTHO05D004189 6.7e-55 217.6 155 72.3
HanXRQChr05g0147821 Helianthus annuus HOM05D003390 ORTHO05D004189 8.7e-55 217.2 159 68.6
Rhsim06G0115300 Rhododendron simsii HOM05D003390 ORTHO05D004189 1.5e-54 216.5 155 71.0
Sed0005552 Sechium edule HOM05D003390 ORTHO05D004189 1.9e-54 216.1 129 83.7
Atru.chr6.2080 Acer truncatum HOM05D003390 ORTHO05D004189 2.5e-54 215.7 155 69.0
CsaV3_1G032710 Cucumis sativus L. HOM05D003390 ORTHO05D004189 4.3e-54 214.9 155 69.0
CANSAT35G0642 Cannabis sativa HOM05D003390 ORTHO05D004189 7.4e-54 214.2 136 78.7
Peaxi162Scf00035g02617 Petunia axillaris HOM05D003390 ORTHO05D004189 7.4e-54 214.2 153 73.2
Os01g0601000 Oryza sativa ssp. japonica HOM05D003390 ORTHO05D004189 9.6e-54 213.8 144 75.0
ECA232G3556 Erigeron canadensis HOM05D003390 ORTHO05D004189 1.3e-53 213.4 157 70.7
HPP92_008023 Vanilla planifolia HOM05D003390 ORTHO05D004189 1.3e-53 213.4 158 70.3
Lalb_Chr10g0106641 Lupinus albus HOM05D003390 ORTHO05D004189 2.1e-53 212.6 142 74.6
Medtr5g091570 Medicago truncatula HOM05D003390 ORTHO05D004189 2.1e-53 212.6 142 77.5
Prupe.3G173900 Prunus persica HOM05D003390 ORTHO05D004189 2.8e-53 212.2 155 71.6
Cc05_g09550 Coffea canephora HOM05D003390 ORTHO05D004189 3.7e-53 211.8 155 69.7
DCAR_013317 Daucus carota HOM05D003390 ORTHO05D004189 6.2e-53 211.1 142 74.6
Ca_06279_v3 Cicer arietinum L. HOM05D003390 ORTHO05D004189 8.1e-53 210.7 142 77.5
Ca_30614_v3 Cicer arietinum L. HOM05D003390 ORTHO05D004189 8.1e-53 210.7 142 77.5
Os01g0664100 Oryza sativa ssp. japonica HOM05D003390 ORTHO05D004189 1.1e-52 210.3 155 67.7
Thecc.01G163000 Theobroma cacao HOM05D003390 ORTHO05D004189 2.4e-52 209.1 155 69.0
TPR.G12521 Trifolium pratense HOM05D003390 ORTHO05D004189 2.4e-52 209.1 156 70.5
AT1G29830 Arabidopsis thaliana HOM05D003390 ORTHO05D004189 3.1e-52 208.8 155 69.7
CAN.G2018.1 Capsicum annuum HOM05D003390 ORTHO05D004189 4.0e-52 208.4 154 70.8
Gorai.006G007900 Gossypium raimondii HOM05D003390 ORTHO05D004189 2.0e-51 206.1 156 69.9
Lsat_1_v5_gn_0_8061 Lactuca sativa HOM05D003390 ORTHO05D004189 2.0e-51 206.1 142 73.2
TPR.G17499 Trifolium pratense HOM05D003390 ORTHO05D004189 3.4e-51 205.3 155 65.8
Gohir.A09G007100 Gossypium hirsutum HOM05D003390 ORTHO05D004189 5.8e-51 204.5 156 69.2
PGSC0003DMG400021242 Solanum tuberosum HOM05D003390 ORTHO05D004189 5.8e-51 204.5 153 69.3
Solyc10g007740.3 Solanum lycopersicum HOM05D003390 ORTHO05D004189 7.6e-51 204.1 153 70.6
Sopen10g003650 Solanum pennellii HOM05D003390 ORTHO05D004189 7.6e-51 204.1 153 70.6
Migut.H02104 Erythranthe guttata HOM05D003390 ORTHO05D004189 3.2e-49 198.7 155 63.2
Glyma.02G285600 Glycine max HOM05D003390 ORTHO05D004189 5.5e-49 198.0 133 76.7
SGA_v2.0_scaffold4G02117 Striga asiatica HOM05D003390 ORTHO05D004189 5.5e-49 198.0 155 67.7
Oeu020929.2 Olea europaea HOM05D003390 ORTHO05D004189 7.1e-49 197.6 131 77.1
Lsat_1_v5_gn_4_29721 Lactuca sativa HOM05D003390 ORTHO05D004189 1.2e-48 196.8 159 64.2
SEGI_30082 Sequoiadendron giganteum HOM05D003390 ORTHO05D004189 2.1e-48 196.1 155 62.6
SalBow7G4851 Salvia bowleyana HOM05D003390 ORTHO05D004189 3.0e-47 192.2 155 63.9
COL.COLO4_07487 Corchorus olitorius HOM05D003390 ORTHO05D004189 1.5e-46 189.9 127 73.2
Aa31LG1G24700 Aethionema arabicum HOM05D003390 ORTHO05D004189 2.5e-46 189.1 156 62.8
AT2G42950 Arabidopsis thaliana HOM05D003390 ORTHO05D004189 4.3e-46 188.3 157 62.4
AL4G41580 Arabidopsis lyrata HOM05D003390 ORTHO05D004189 1.6e-45 186.4 157 61.8
Thhalv10016539m.g Eutrema salsugineum HOM05D003390 ORTHO05D004189 3.7e-45 185.3 142 67.6
Sp4g25080 Schrenkiella parvula HOM05D003390 ORTHO05D004189 6.2e-45 184.5 157 62.4
Lj1A614G6 Lonicera japonica HOM05D003390 ORTHO05D004189 3.1e-44 182.2 155 61.9
CARHR138010 Cardamine hirsuta HOM05D003390 ORTHO05D004189 4.0e-44 181.8 145 63.4
BNapus_Darmor_BZH_scaffold_64p00180 Brassica napus HOM05D003390 ORTHO05D004189 1.2e-43 180.3 159 61.0
BraA04t18699Z Brassica rapa HOM05D003390 ORTHO05D004189 1.2e-43 180.3 159 61.0
BcaC02g07214 Brassica carinata HOM05D003390 ORTHO05D004189 7.6e-43 177.6 136 66.9
BolC4t28499H Brassica oleracea HOM05D003390 ORTHO05D004189 7.6e-43 177.6 136 66.9
Carub.0004s2542 Capsella rubella HOM05D003390 ORTHO05D004189 7.6e-43 177.6 157 59.2
BcaB06g29273 Brassica carinata HOM05D003390 ORTHO05D004189 2.2e-42 176.0 142 64.8
FAN02G0419 Fragaria x ananassa HOM05D003390 ORTHO05D004189 2.2e-42 176.0 144 66.7
FAN09G2932 Fragaria x ananassa HOM05D003390 ORTHO05D004189 2.9e-42 175.6 155 63.2
C04p69990 Brassica napus HOM05D003390 ORTHO05D004189 6.5e-42 174.5 136 66.2
FAN19G1589 Fragaria x ananassa HOM05D003390 ORTHO05D004189 5.5e-41 171.4 146 61.6
LjContig00141g0021144 Lotus japonicus HOM05D003390 ORTHO05D004791 7.9e-40 167.5 138 68.8
FvH4_1g24850 Fragaria vesca HOM05D003390 ORTHO05D004189 2.3e-39 166.0 146 60.3
FAN26G2057 Fragaria x ananassa HOM05D003390 ORTHO05D004189 2.3e-39 166.0 146 61.0
Eucgr.A01987 Eucalyptus grandis HOM05D003390 ORTHO05D004189 5.1e-39 164.9 135 62.2
Prupe.4G074700 Prunus persica HOM05D003390 ORTHO05D004189 7.4e-38 161.0 116 69.0
COL.COLO4_08451 Corchorus olitorius HOM05D003390 ORTHO05D004189 9.7e-38 160.6 128 64.8
Eucgr.A01984 Eucalyptus grandis HOM05D003390 ORTHO05D004189 6.3e-37 157.9 133 64.7
AagrBONN_evm.TU.Sc2ySwM_228.3525 Anthoceros agrestis HOM05D003390 ORTHO05D004189 2.0e-35 152.9 134 58.2
Pp3c9_16960 Physcomitrium patens HOM05D003390 ORTHO05D004189 1.7e-34 149.8 134 57.5
Mapoly0130s0010 Marchantia polymorpha HOM05D003390 ORTHO05D004189 2.2e-34 149.4 136 60.3
Pp3c9_12460 Physcomitrium patens HOM05D003390 ORTHO05D004189 5.0e-34 148.3 134 57.5
Pp3c15_4880 Physcomitrium patens HOM05D003390 ORTHO05D004189 3.9e-31 138.7 130 54.6
Nn4g26479 Nelumbo nucifera HOM05D003390 ORTHO05D004189 8.8e-31 137.5 79 84.8
FAN14G5098 Fragaria x ananassa HOM05D003390 ORTHO05D004189 2.0e-30 136.3 117 65.0
Gohir.D09G006300 Gossypium hirsutum HOM05D003390 ORTHO05D004189 3.6e-24 115.5 64 84.4
PSO541G3465 Papaver somniferum HOM05D003390 ORTHO05D004189 1.7e-21 106.7 90 62.2
MD17G1138500 Malus domestica HOM05D003390 ORTHO05D004189 9.1e-20 100.9 160 46.2
FvH4_6g38330 Fragaria vesca HOM05D003390 ORTHO05D004189 2.1e-16 89.7 55 80.0
TPR.G31585 Trifolium pratense HOM05D003390 ORTHO05D004189 8.8e-15 84.3 69 56.5
Atru.chr10.1372 Acer truncatum HOM05D003390 ORTHO05D004189 9.1e-12 74.3 41 87.8
Actinidia07674 Actinidia chinensis HOM05D003390 ORTHO05D004189 8.5e-10 67.8 68 58.8


User provided reference genes

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