Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g021100.3 Solanum lycopersicum HOM05D004639 ORTHO05D005201 4.9e-270 934.1 545 100.0
Sopen02g005400 Solanum pennellii HOM05D004639 ORTHO05D005201 7.5e-263 910.2 545 96.5
CAN.G989.2 Capsicum annuum HOM05D004639 ORTHO05D005201 2.8e-185 652.5 539 72.2
Nitab4.5_0010824g0010 Nicotiana tabacum HOM05D004639 ORTHO05D005201 4.0e-139 499.2 698 44.8
PGSC0003DMG400017947 Solanum tuberosum HOM05D004639 ORTHO05D005201 7.3e-125 451.8 258 89.1
Nitab4.5_0000843g0080 Nicotiana tabacum HOM05D004639 ORTHO05D005201 9.6e-125 451.4 611 46.3
Nitab4.5_0001799g0030 Nicotiana tabacum HOM05D004639 ORTHO05D005201 1.1e-83 315.1 246 64.6
Manes.18G143900 Manihot esculenta HOM05D004639 ORTHO05D005201 1.2e-66 258.5 168 69.0
Peaxi162Scf00331g00311 Petunia axillaris HOM05D004639 ORTHO05D005201 3.5e-66 256.9 161 73.3
MD00G1164900 Malus domestica HOM05D004639 ORTHO05D005201 5.0e-65 253.1 209 59.8
Cc00_g06760 Coffea canephora HOM05D004639 ORTHO05D005201 1.9e-64 251.1 193 63.2
Prupe.4G286600 Prunus persica HOM05D004639 ORTHO05D005201 5.5e-64 249.6 209 58.4
Cpa.g.sc15.68 Carica papaya HOM05D004639 ORTHO05D005201 7.2e-64 249.2 188 66.5
Dinv01634 Davidia involucrata HOM05D004639 ORTHO05D005201 1.4e-62 245.0 208 58.2
Oeu061992.1 Olea europaea HOM05D004639 ORTHO05D005201 6.7e-62 242.7 203 60.1
Migut.A01100 Erythranthe guttata HOM05D004639 ORTHO05D005201 2.0e-61 241.1 197 60.4
Hma1.2p1_1077F.1_g254710 Hydrangea macrophylla HOM05D004639 ORTHO05D005201 2.6e-61 240.7 220 55.9
Actinidia23035 Actinidia chinensis HOM05D004639 ORTHO05D005201 9.7e-61 238.8 209 55.5
QL01p053168 Quercus lobata HOM05D004639 ORTHO05D005201 9.7e-61 238.8 209 56.5
Atru.chr9.65 Acer truncatum HOM05D004639 ORTHO05D005201 1.1e-59 235.3 160 67.5
TAR376G0371 Trochodendron aralioides HOM05D004639 ORTHO05D005201 1.4e-59 235.0 170 65.9
QL01p053770 Quercus lobata HOM05D004639 ORTHO05D005201 3.1e-59 233.8 195 59.5
Carub.0003s0750 Capsella rubella HOM05D004639 ORTHO05D005201 5.3e-59 233.0 188 60.6
Gohir.A09G007300 Gossypium hirsutum HOM05D004639 ORTHO05D005201 1.2e-58 231.9 236 52.5
Lj2g0020909 Lotus japonicus HOM05D004639 ORTHO05D005201 1.6e-58 231.5 195 57.9
Rhsim11G0007200 Rhododendron simsii HOM05D004639 ORTHO05D005201 2.0e-58 231.1 160 66.2
arahy.Tifrunner.gnm1.ann1.CP937L Arachis hypogaea HOM05D004639 ORTHO05D005201 3.5e-58 230.3 190 60.0
arahy.Tifrunner.gnm1.ann1.GWL1KB Arachis hypogaea HOM05D004639 ORTHO05D005201 3.5e-58 230.3 190 60.0
RcHm_v2.0_Chr3g0497491 Rosa chinensis HOM05D004639 ORTHO05D005201 3.5e-58 230.3 174 62.6
vmacro04281 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 4.5e-58 229.9 164 66.5
Gorai.006G008100 Gossypium raimondii HOM05D004639 ORTHO05D005201 5.9e-58 229.6 159 66.7
FvH4_1g27870 Fragaria vesca HOM05D004639 ORTHO05D005201 1.0e-57 228.8 165 64.8
FAN26G1776 Fragaria x ananassa HOM05D004639 ORTHO05D005201 1.0e-57 228.8 165 64.8
Thecc.04G056700 Theobroma cacao HOM05D004639 ORTHO05D005201 1.0e-57 228.8 186 59.7
MSTRG.8994 Avicennia marina HOM05D004639 ORTHO05D005201 1.3e-57 228.4 172 62.8
FAN19G3130 Fragaria x ananassa HOM05D004639 ORTHO05D005201 1.3e-57 228.4 165 64.8
ECA234G0087 Erigeron canadensis HOM05D004639 ORTHO05D005201 2.2e-57 227.6 181 56.9
AL3G19300 Arabidopsis lyrata HOM05D004639 ORTHO05D005201 2.9e-57 227.3 185 62.2
Gohir.D09G006600 Gossypium hirsutum HOM05D004639 ORTHO05D005201 2.9e-57 227.3 159 66.0
Aa31LG5G18470 Aethionema arabicum HOM05D004639 ORTHO05D005201 3.8e-57 226.9 194 57.2
Ciclev10028470m.g Citrus clementina HOM05D004639 ORTHO05D005201 5.0e-57 226.5 197 57.9
SGA_v2.0_scaffold291G47333 Striga asiatica HOM05D004639 ORTHO05D005201 5.0e-57 226.5 184 57.6
THA.LOC104805811 Tarenaya hassleriana HOM05D004639 ORTHO05D005201 5.0e-57 226.5 176 59.1
vmacro22429 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 5.0e-57 226.5 164 65.9
A07p00740 Brassica napus HOM05D004639 ORTHO05D005201 1.1e-56 225.3 185 61.1
Aqoxy4G01839 Aquilegia oxysepala HOM05D004639 ORTHO05D005201 1.9e-56 224.6 165 63.0
C07p01740 Brassica napus HOM05D004639 ORTHO05D005201 2.5e-56 224.2 185 60.0
BolC7t40577H Brassica oleracea HOM05D004639 ORTHO05D005201 2.5e-56 224.2 185 60.0
MBI03_g13041_MAGBIO Magnolia biondii HOM05D004639 ORTHO05D005201 2.5e-56 224.2 170 63.5
BraA07t27872Z Brassica rapa HOM05D004639 ORTHO05D005201 9.4e-56 222.2 185 60.5
DCAR_016067 Daucus carota HOM05D004639 ORTHO05D005201 9.4e-56 222.2 161 64.6
Lsat_1_v5_gn_3_140620 Lactuca sativa HOM05D004639 ORTHO05D005201 1.2e-55 221.9 158 60.8
Sp3g06840 Schrenkiella parvula HOM05D004639 ORTHO05D005201 2.7e-55 220.7 188 58.0
CANSAT64G1383 Cannabis sativa HOM05D004639 ORTHO05D005201 3.6e-55 220.3 151 65.6
CANSAT64G2443 Cannabis sativa HOM05D004639 ORTHO05D005201 3.6e-55 220.3 151 65.6
Thhalv10020704m.g Eutrema salsugineum HOM05D004639 ORTHO05D005201 4.7e-55 219.9 181 59.1
CANSAT64G2852 Cannabis sativa HOM05D004639 ORTHO05D005201 1.0e-54 218.8 152 65.1
TWI15G1026 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 1.0e-54 218.8 157 63.1
BcaB04g16901 Brassica carinata HOM05D004639 ORTHO05D005201 1.4e-54 218.4 198 55.6
SalBow6G0181 Salvia bowleyana HOM05D004639 ORTHO05D005201 4.0e-54 216.9 196 54.6
SalBow6G5700 Salvia bowleyana HOM05D004639 ORTHO05D005201 4.0e-54 216.9 196 54.6
GSVIVG01003641001 Vitis vinifera HOM05D004639 ORTHO05D005201 4.0e-54 216.9 199 54.8
TWI31G0951 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 1.5e-53 214.9 213 50.7
VMungo0540G1855 Vigna mungo HOM05D004639 ORTHO05D005201 2.0e-53 214.5 168 60.1
Potri.014G189400 Populus trichocarpa HOM05D004639 ORTHO05D005201 2.6e-53 214.2 195 55.4
PGR031G3121 Punica granatum HOM05D004639 ORTHO05D005201 3.4e-53 213.8 152 64.5
Potri.014G187300 Populus trichocarpa HOM05D004639 ORTHO05D005201 5.7e-53 213.0 193 55.4
Lj2g0022882 Lotus japonicus HOM05D004639 ORTHO05D005201 7.5e-53 212.6 168 58.9
Sabra19G0060900 Salix brachista HOM05D004639 ORTHO05D005201 7.5e-53 212.6 168 60.7
Sabra19G0061000 Salix brachista HOM05D004639 ORTHO05D005201 7.5e-53 212.6 168 60.7
SabraUnG0000100 Salix brachista HOM05D004639 ORTHO05D005201 7.5e-53 212.6 168 60.7
SabraUnG0000200 Salix brachista HOM05D004639 ORTHO05D005201 7.5e-53 212.6 168 60.7
Nn5g27169 Nelumbo nucifera HOM05D004639 ORTHO05D005201 1.3e-52 211.8 201 54.7
Potri.014G187000 Populus trichocarpa HOM05D004639 ORTHO05D005201 1.3e-52 211.8 193 55.4
AUR62017756 Chenopodium quinoa HOM05D004639 ORTHO05D005201 2.2e-52 211.1 169 59.2
Glyma.13G009500 Glycine max HOM05D004639 ORTHO05D005201 2.8e-52 210.7 171 59.1
Phvul.L000400 Phaseolus vulgaris HOM05D004639 ORTHO05D005201 2.8e-52 210.7 169 59.8
HanXRQChr12g0386021 Helianthus annuus HOM05D004639 ORTHO05D005201 2.4e-51 207.6 143 63.6
Sabra12G0026100 Salix brachista HOM05D004639 ORTHO05D005201 3.1e-51 207.2 177 56.5
Ah.05g167280 Amaranthus hybridus HOM05D001485 ORTHO05D001407 4.1e-51 206.8 167 57.5
Potri.012G037700 Populus trichocarpa HOM05D004639 ORTHO05D005201 7.0e-51 206.1 173 56.6
HanXRQChr16g0532761 Helianthus annuus HOM05D004639 ORTHO05D005201 2.7e-50 204.1 143 62.9
Sabra19G0060700 Salix brachista HOM05D004639 ORTHO05D005201 2.7e-50 204.1 146 63.7
ClCG08G005050 Citrullus lanatus HOM05D004639 ORTHO05D005201 3.5e-50 203.8 168 56.5
PSO384G4518 Papaver somniferum HOM05D004639 ORTHO05D005201 1.3e-49 201.8 177 52.5
PSO493G0020 Papaver somniferum HOM05D004639 ORTHO05D005201 1.3e-49 201.8 177 52.5
MELO3C022885.2 Cucumis melo HOM05D004639 ORTHO05D005201 2.3e-49 201.1 168 55.4
ECA234G3785 Erigeron canadensis HOM05D004639 ORTHO05D005201 2.3e-49 201.1 180 52.2
Medtr0037s0250 Medicago truncatula HOM05D004639 ORTHO05D005201 6.6e-49 199.5 204 49.5
ATR0068G005 Amborella trichopoda HOM05D004639 ORTHO05D005201 4.2e-48 196.8 189 52.9
CsaV3_5G037160 Cucumis sativus L. HOM05D004639 ORTHO05D005201 5.5e-48 196.4 168 54.2
CiPaw.15G093500 Carya illinoinensis HOM05D004639 ORTHO05D005201 7.2e-48 196.1 194 51.0
Medtr0037s0060 Medicago truncatula HOM05D004639 ORTHO05D005201 7.2e-48 196.1 176 56.2
EL10As7g23724 Beta vulgaris HOM05D004639 ORTHO05D005201 9.5e-48 195.7 156 59.0
Eucgr.B01580 Eucalyptus grandis HOM05D004639 ORTHO05D005201 2.1e-47 194.5 152 57.2
SEGI_27362 Sequoiadendron giganteum HOM05D004639 ORTHO05D005201 1.8e-46 191.4 144 61.8
Potri.014G187766 Populus trichocarpa HOM05D004639 ORTHO05D005201 2.3e-46 191.0 193 51.8
Hund25534 Selenicereus undatus HOM05D004639 ORTHO05D005201 7.5e-45 186.0 137 62.8
HPP92_007024 Vanilla planifolia HOM05D004639 ORTHO05D005201 7.5e-45 186.0 152 54.6
SHI25031 Sapria himalayana HOM05D004639 ORTHO05D005201 9.8e-45 185.7 145 59.3
Lalb_Chr00c23g0406301 Lupinus albus HOM05D004639 ORTHO05D005201 1.3e-44 185.3 152 57.2
BcaC08g44553 Brassica carinata HOM05D004639 ORTHO05D005201 1.7e-44 184.9 193 54.4
Lj2g0018447 Lotus japonicus HOM05D004639 ORTHO05D005201 3.2e-43 180.6 182 48.4
Duzib235G0802 Durio zibethinus HOM05D004639 ORTHO05D005201 1.2e-42 178.7 150 59.3
CDE02G2478 Ceratophyllum demersum HOM05D004639 ORTHO05D005201 1.3e-41 175.3 185 51.4
Sabra19G0060200 Salix brachista HOM05D004639 ORTHO05D005201 6.6e-41 172.9 172 50.0
HPP92_007076 Vanilla planifolia HOM05D004639 ORTHO05D005201 8.6e-41 172.6 145 54.5
AUR62032895 Chenopodium quinoa HOM05D004639 ORTHO05D005201 1.2e-39 168.7 172 51.7
unitig_22.g6364 Utricularia gibba HOM05D004639 ORTHO05D005201 2.8e-39 167.5 157 54.1
BcaC06g36658 Brassica carinata HOM05D004639 ORTHO05D005201 8.0e-39 166.0 153 56.2
Sc22g0004560 Simmondsia chinensis HOM05D004639 ORTHO05D005201 3.1e-38 164.1 128 57.8
CBR_g51322 Chara braunii HOM05D004639 ORTHO05D005201 8.9e-38 162.5 135 54.8
Pp3c15_4380 Physcomitrium patens HOM05D004639 ORTHO05D005201 1.7e-36 158.3 141 51.1
Mapoly0049s0024 Marchantia polymorpha HOM05D004639 ORTHO05D005201 1.9e-35 154.8 133 54.1
QL01p052883 Quercus lobata HOM05D011240 ORTHO05D005201 1.9e-35 154.8 98 68.4
Zm00001eb264110 Zea mays HOM05D004639 ORTHO05D005201 7.0e-35 152.9 170 45.3
Os09g0101100 Oryza sativa ssp. japonica HOM05D004639 ORTHO05D005201 9.2e-35 152.5 173 45.7
Dinv08242 Davidia involucrata HOM05D004639 ORTHO05D005201 1.6e-34 151.8 98 67.3
SMO334G0025 Selaginella moellendorffii HOM05D004639 ORTHO05D005201 2.3e-33 147.9 136 47.1
C06p20180 Brassica napus HOM05D004639 ORTHO05D005201 3.9e-33 147.1 154 50.0
BolC6t37199H Brassica oleracea HOM05D004639 ORTHO05D005201 3.9e-33 147.1 154 50.0
CARHR082670 Cardamine hirsuta HOM05D004639 ORTHO05D005201 6.6e-33 146.4 99 64.6
PRCOL_00006916 Prasinoderma coloniale HOM05D004639 ORTHO05D005201 4.7e-31 140.2 136 49.3
Nitab4.5_0001799g0040 Nicotiana tabacum HOM05D004639 ORTHO05D005201 1.8e-30 138.3 230 43.5
TPR.G9531 Trifolium pratense HOM05D004639 ORTHO05D005201 2.3e-30 137.9 99 56.6
Sed0017627 Sechium edule HOM05D004639 ORTHO05D005201 1.5e-29 135.2 148 48.6
Lalb_Chr18g0049251 Lupinus albus HOM05D004639 ORTHO05D005201 4.9e-28 130.2 99 58.6
Lalb_Chr00c55g0413711 Lupinus albus HOM05D004639 ORTHO05D005201 2.4e-27 127.9 97 58.8
Cre05.g234250 Chlamydomonas reinhardtii HOM05D004639 ORTHO05D005201 3.5e-26 124.0 137 43.1
COL.COLO4_05916 Corchorus olitorius HOM05D004639 ORTHO05D005201 2.8e-23 114.4 124 48.4
HPP92_015991 Vanilla planifolia HOM05D004639 ORTHO05D005201 3.6e-23 114.0 99 50.5
Sabra19G0060600 Salix brachista HOM05D004639 ORTHO05D005201 6.2e-23 113.2 92 59.8
CBR_g37349 Chara braunii HOM05D000004 ORTHO05D000002 1.1e-22 112.5 122 48.4
Sabra19G0060300 Salix brachista HOM05D004639 ORTHO05D005201 1.2e-21 109.0 82 61.0
QL93p0107_0438 Quercus lobata HOM05D004639 ORTHO05D005201 1.3e-20 105.5 55 76.4
Gohir.D02G140450 Gossypium hirsutum HOM05D004639 ORTHO05D005201 1.7e-20 105.1 77 59.7
Gorai.005G156200 Gossypium raimondii HOM05D004639 ORTHO05D005201 5.4e-19 100.1 77 57.1
Haze_08020 Corylus avellana HOM05D004639 ORTHO05D005201 6.6e-17 93.2 56 76.8
TPR.G22982 Trifolium pratense HOM05D004639 ORTHO05D005201 4.3e-16 90.5 72 59.7
CARHR082660 Cardamine hirsuta HOM05D004639 ORTHO05D005201 9.6e-16 89.4 83 57.8
QL02p058806 Quercus lobata HOM05D004639 ORTHO05D005201 2.1e-15 88.2 91 52.7
AT3G07930 Arabidopsis thaliana HOM05D004639 ORTHO05D005201 2.8e-15 87.8 94 52.1
CSS0047186 Camellia sinensis var. sinensis HOM05D004639 ORTHO05D005201 2.8e-15 87.8 73 54.8
QL01p054228 Quercus lobata HOM05D004639 ORTHO05D005201 3.1e-14 84.3 91 50.5
CSS0021628 Camellia sinensis var. sinensis HOM05D004639 ORTHO05D005201 4.0e-14 84.0 57 70.2
Psat1g014800 Pisum sativum HOM05D004639 ORTHO05D005201 5.2e-14 83.6 133 39.1
FAN23G0569 Fragaria x ananassa HOM05D004639 ORTHO05D005201 1.2e-13 82.4 65 58.5
Medtr6g034730 Medicago truncatula HOM05D004639 ORTHO05D005201 6.4e-12 76.6 65 50.8
Medtr6g033105 Medicago truncatula HOM05D004639 ORTHO05D005201 5.1e-09 67.0 75 56.0
unitig_22.g6365 Utricularia gibba HOM05D004639 ORTHO05D005201 6.6e-09 66.6 35 77.1
MCO02G309 Micromonas commoda HOM05D004639 ORTHO05D005201 1.9e-08 65.1 157 30.6
Lalb_Chr18g0049241 Lupinus albus HOM05D004639 ORTHO05D005201 1.3e-07 62.4 56 53.6
MCO10G304 Micromonas commoda HOM05D046594 ORTHO05D005201 1.8e-06 58.5 82 36.6


User provided reference genes

Program Settings