Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g021050.3 Solanum lycopersicum HOM05D006509 ORTHO05D008144 4.1e-170 601.3 299 100.0
Sopen02g005330 Solanum pennellii HOM05D006509 ORTHO05D008144 1.5e-167 592.8 299 98.7
PGSC0003DMG400019835 Solanum tuberosum HOM05D006509 ORTHO05D008144 2.0e-156 555.8 303 90.8
CAN.G157.10 Capsicum annuum HOM05D006509 ORTHO05D008144 1.5e-124 449.9 306 74.8
Nitab4.5_0002192g0100 Nicotiana tabacum HOM05D006509 ORTHO05D008144 1.9e-119 433.0 321 70.4
Peaxi162Scf00818g00020 Petunia axillaris HOM05D006509 ORTHO05D008144 5.6e-111 404.8 309 66.0
Thecc.01G136400 Theobroma cacao HOM05D006509 ORTHO05D008144 8.5e-91 337.8 282 61.7
Cfa008714 Carpinus fangiana HOM05D006509 ORTHO05D008144 1.1e-90 337.4 243 67.5
Manes.09G055500 Manihot esculenta HOM05D006509 ORTHO05D008144 1.1e-90 337.4 247 65.6
Duzib264G0706 Durio zibethinus HOM05D006509 ORTHO05D008144 1.4e-90 337.0 300 59.3
TWI74G1084 Tripterygium wilfordii HOM05D006509 ORTHO05D008144 1.2e-89 334.0 266 60.5
Ciclev10032158m.g Citrus clementina HOM05D006509 ORTHO05D008144 2.1e-89 333.2 272 57.7
TAR629G0624 Trochodendron aralioides HOM05D006509 ORTHO05D008144 2.7e-89 332.8 273 58.2
GSVIVG01010764001 Vitis vinifera HOM05D006509 ORTHO05D008144 3.6e-89 332.4 260 63.5
Hma1.2p1_1005F.1_g246910 Hydrangea macrophylla HOM05D006509 ORTHO05D008144 6.1e-89 331.6 265 60.8
BcaC05g28409 Brassica carinata HOM05D006509 ORTHO05D008144 7.9e-89 331.3 295 57.6
CARHR095320 Cardamine hirsuta HOM05D006509 ORTHO05D008144 1.0e-88 330.9 305 55.7
Haze_11724 Corylus avellana HOM05D006509 ORTHO05D008144 1.4e-88 330.5 243 65.8
C05p44930 Brassica napus HOM05D006509 ORTHO05D008144 2.3e-88 329.7 295 57.6
BolC5t33216H Brassica oleracea HOM05D006509 ORTHO05D008144 2.3e-88 329.7 295 57.6
Atru.chr11.1320 Acer truncatum HOM05D006509 ORTHO05D008144 3.0e-88 329.3 239 63.6
Carub.0003s1969 Capsella rubella HOM05D006509 ORTHO05D008144 3.0e-88 329.3 299 56.2
Atru.chr11.1232 Acer truncatum HOM05D006509 ORTHO05D008144 3.9e-88 328.9 239 63.6
A05p29310 Brassica napus HOM05D006509 ORTHO05D008144 6.7e-88 328.2 247 64.8
BraA05t21822Z Brassica rapa HOM05D006509 ORTHO05D008144 1.1e-87 327.4 301 56.8
Gorai.010G244900 Gossypium raimondii HOM05D006509 ORTHO05D008144 1.1e-87 327.4 244 67.2
Eucgr.G02566 Eucalyptus grandis HOM05D006509 ORTHO05D008144 2.5e-87 326.2 238 64.7
Gohir.D13G187200 Gossypium hirsutum HOM05D006509 ORTHO05D008144 2.5e-87 326.2 244 67.2
EL10Ac9g22921 Beta vulgaris HOM05D006509 ORTHO05D008144 3.3e-87 325.9 273 57.5
MSTRG.22733 Avicennia marina HOM05D006509 ORTHO05D008144 4.3e-87 325.5 243 64.2
CANSAT56G2102 Cannabis sativa HOM05D006509 ORTHO05D008144 4.3e-87 325.5 263 61.6
Sp3g17820 Schrenkiella parvula HOM05D006509 ORTHO05D008144 4.3e-87 325.5 252 62.3
SalBow2G3295 Salvia bowleyana HOM05D006509 ORTHO05D008144 5.7e-87 325.1 226 65.0
DCAR_030403 Daucus carota HOM05D006509 ORTHO05D008144 7.4e-87 324.7 287 57.8
Migut.I00780 Erythranthe guttata HOM05D006509 ORTHO05D008144 9.7e-87 324.3 293 56.3
Thhalv10021111m.g Eutrema salsugineum HOM05D006509 ORTHO05D008144 9.7e-87 324.3 306 55.9
Hund08535 Selenicereus undatus HOM05D006509 ORTHO05D008144 9.7e-87 324.3 242 63.2
QL03p043626 Quercus lobata HOM05D006509 ORTHO05D008144 1.3e-86 323.9 248 63.3
Sc06g0007860 Simmondsia chinensis HOM05D006509 ORTHO05D008144 1.3e-86 323.9 243 62.6
Nn1g04452 Nelumbo nucifera HOM05D006509 ORTHO05D008144 1.7e-86 323.6 226 67.7
THA.LOC104800032 Tarenaya hassleriana HOM05D006509 ORTHO05D008144 2.8e-86 322.8 248 62.1
BcaB06g26050 Brassica carinata HOM05D006509 ORTHO05D008144 3.7e-86 322.4 296 57.1
AL3G33260 Arabidopsis lyrata HOM05D006509 ORTHO05D008144 1.4e-85 320.5 303 54.8
PGR004G1007 Punica granatum HOM05D006509 ORTHO05D008144 1.4e-85 320.5 247 62.3
CSS0015169 Camellia sinensis var. sinensis HOM05D006509 ORTHO05D008144 4.1e-85 318.9 261 59.8
Gohir.A13G179100 Gossypium hirsutum HOM05D006509 ORTHO05D008144 5.3e-85 318.5 227 69.2
THA.LOC104814131 Tarenaya hassleriana HOM05D006509 ORTHO05D008144 5.3e-85 318.5 248 61.3
SGA_v2.0_scaffold5G02679 Striga asiatica HOM05D006509 ORTHO05D008144 1.2e-84 317.4 305 54.8
AT3G19810 Arabidopsis thaliana HOM05D006509 ORTHO05D008144 1.5e-84 317.0 278 57.9
CiPaw.05G167100 Carya illinoinensis HOM05D006509 ORTHO05D008144 2.6e-84 316.2 240 62.9
RcHm_v2.0_Chr1g0363071 Rosa chinensis HOM05D006509 ORTHO05D008144 3.4e-84 315.8 260 60.4
arahy.Tifrunner.gnm1.ann1.LJ2JSE Arachis hypogaea HOM05D006509 ORTHO05D008144 5.9e-84 315.1 276 56.2
arahy.Tifrunner.gnm1.ann1.4V51TJ Arachis hypogaea HOM05D006509 ORTHO05D008144 7.7e-84 314.7 278 55.4
Lsat_1_v5_gn_3_32880 Lactuca sativa HOM05D006509 ORTHO05D008144 7.7e-84 314.7 327 49.2
arahy.Tifrunner.gnm1.ann1.6728UU Arachis hypogaea HOM05D006509 ORTHO05D008144 1.0e-83 314.3 276 56.2
Phvul.002G240600 Phaseolus vulgaris HOM05D006509 ORTHO05D008144 1.3e-83 313.9 253 60.9
Aa31LG8G6580 Aethionema arabicum HOM05D006509 ORTHO05D008144 3.8e-83 312.4 305 53.4
Lj4g0012507 Lotus japonicus HOM05D006509 ORTHO05D008144 6.5e-83 311.6 244 61.5
Gohir.A09G005300 Gossypium hirsutum HOM05D006509 ORTHO05D008144 8.5e-83 311.2 247 61.9
arahy.Tifrunner.gnm1.ann1.IV5K9E Arachis hypogaea HOM05D006509 ORTHO05D008144 1.9e-82 310.1 278 54.7
PSO017G6086 Papaver somniferum HOM05D006509 ORTHO05D008144 1.9e-82 310.1 270 55.9
FvH4_7g19250 Fragaria vesca HOM05D006509 ORTHO05D008144 2.5e-82 309.7 250 60.4
FAN06G0528 Fragaria x ananassa HOM05D006509 ORTHO05D008144 2.5e-82 309.7 250 60.4
FAN03G0898 Fragaria x ananassa HOM05D006509 ORTHO05D008144 4.2e-82 308.9 250 60.4
MD01G1107600 Malus domestica HOM05D006509 ORTHO05D008144 4.2e-82 308.9 226 65.0
FAN01G2825 Fragaria x ananassa HOM05D006509 ORTHO05D008144 5.5e-82 308.5 250 60.4
Gohir.D09G004600 Gossypium hirsutum HOM05D006509 ORTHO05D008144 5.5e-82 308.5 247 61.5
VMungo0251G2215 Vigna mungo HOM05D006509 ORTHO05D008144 5.5e-82 308.5 271 57.2
Gorai.006G006200 Gossypium raimondii HOM05D006509 ORTHO05D008144 3.6e-81 305.8 247 61.1
PSO478G1783 Papaver somniferum HOM05D006509 ORTHO05D008144 1.4e-80 303.9 249 57.4
Lalb_Chr13g0295231 Lupinus albus HOM05D006509 ORTHO05D008144 1.8e-80 303.5 224 66.5
Prupe.2G212300 Prunus persica HOM05D006509 ORTHO05D008144 2.3e-80 303.1 249 59.8
HanXRQChr06g0171951 Helianthus annuus HOM05D006509 ORTHO05D008144 3.0e-80 302.8 266 55.6
vmacro14294 Vaccinium macrocarpon HOM05D006509 ORTHO05D008144 5.1e-80 302.0 273 55.7
vmacro23064 Vaccinium macrocarpon HOM05D006509 ORTHO05D008144 5.1e-80 302.0 273 55.7
Glyma.05G160301 Glycine max HOM05D006509 ORTHO05D008144 1.1e-79 300.8 257 56.8
Medtr8g086630 Medicago truncatula HOM05D006509 ORTHO05D008144 3.3e-79 299.3 241 60.2
Aqoxy4G00161 Aquilegia oxysepala HOM05D006509 ORTHO05D008144 4.4e-79 298.9 244 59.0
Actinidia04136 Actinidia chinensis HOM05D006509 ORTHO05D008144 7.4e-79 298.1 244 58.6
CDE07G1911 Ceratophyllum demersum HOM05D006509 ORTHO05D008144 1.7e-78 297.0 243 59.3
Sabra10G0129900 Salix brachista HOM05D006509 ORTHO05D008144 1.7e-78 297.0 254 57.1
Sed0013319 Sechium edule HOM05D006509 ORTHO05D008144 1.7e-78 297.0 247 58.7
CDE04G0697 Ceratophyllum demersum HOM05D006509 ORTHO05D008144 4.8e-78 295.4 238 60.1
Ca_17903_v3 Cicer arietinum L. HOM05D006509 ORTHO05D008144 4.8e-78 295.4 239 59.0
Potri.010G170100 Populus trichocarpa HOM05D006509 ORTHO05D008144 8.2e-78 294.7 245 58.8
AUR62014967 Chenopodium quinoa HOM05D003778 ORTHO05D004418 1.8e-77 293.5 216 65.3
CsaV3_7G029430 Cucumis sativus L. HOM05D006509 ORTHO05D008144 1.8e-77 293.5 245 58.4
ClCG09G005710 Citrullus lanatus HOM05D006509 ORTHO05D008144 3.1e-77 292.7 281 52.7
TPR.G6737 Trifolium pratense HOM05D006509 ORTHO05D008144 7.0e-77 291.6 225 61.8
AUR62017665 Chenopodium quinoa HOM05D006509 ORTHO05D008144 1.5e-76 290.4 250 58.0
MBI06_g12322_MAGBIO Magnolia biondii HOM05D006509 ORTHO05D008144 2.2e-75 286.6 211 64.5
Migut.I00779 Erythranthe guttata HOM05D006509 ORTHO05D008144 5.0e-75 285.4 245 58.0
FAN10G2131 Fragaria x ananassa HOM05D006509 ORTHO05D008144 8.5e-75 284.6 233 60.1
Rhsim01G0196900 Rhododendron simsii HOM05D006509 ORTHO05D008144 1.6e-73 280.4 318 47.8
ATR0618G169 Amborella trichopoda HOM05D006509 ORTHO05D008144 1.4e-72 277.3 228 60.5
Psat7g069200 Pisum sativum HOM05D006509 ORTHO05D008144 2.9e-67 259.6 226 55.8
Lj6C721T21 Lonicera japonica HOM05D006509 ORTHO05D008144 8.5e-67 258.1 322 45.7
MELO3C015985.2 Cucumis melo HOM05D006509 ORTHO05D008144 5.7e-63 245.4 209 59.3
Os02g0831200 Oryza sativa ssp. japonica HOM05D006509 ORTHO05D008144 1.6e-60 237.3 233 51.5
Zm00001eb259480 Zea mays HOM05D006509 ORTHO05D008144 1.5e-55 220.7 223 52.0
FAN10G3587 Fragaria x ananassa HOM05D006509 ORTHO05D007808 2.7e-52 209.9 165 60.6
SEGI_16170 Sequoiadendron giganteum HOM05D006509 ORTHO05D008144 7.7e-52 208.4 232 51.3
SEGI_30002 Sequoiadendron giganteum HOM05D006509 ORTHO05D008144 8.6e-51 204.9 260 45.0
AUR62015202 Chenopodium quinoa HOM05D006509 ORTHO05D008144 1.9e-50 203.8 158 62.7
Medtr4g086490 Medicago truncatula HOM05D000001 ORTHO05D000003 7.2e-50 201.8 202 53.0
COL.COLO4_35800 Corchorus olitorius HOM05D006509 ORTHO05D008144 4.7e-49 199.1 144 70.1
unitig_747.g21717 Utricularia gibba HOM05D006509 ORTHO05D008144 6.8e-48 195.3 165 58.2
AUR62014968 Chenopodium quinoa HOM05D006509 ORTHO05D008144 2.2e-46 190.3 138 65.2
Cc03_g14920 Coffea canephora HOM05D006509 ORTHO05D008144 3.1e-45 186.4 138 60.1
Dinv39609 Davidia involucrata HOM05D006509 ORTHO05D008144 5.4e-45 185.7 136 61.8
Mapoly0002s0264 Marchantia polymorpha HOM05D006509 ORTHO05D008144 1.6e-44 184.1 229 41.9
Pp3c4_29820 Physcomitrium patens HOM05D006509 ORTHO05D008144 1.7e-43 180.6 241 39.0
CBR_g57847 Chara braunii HOM05D006509 ORTHO05D008144 2.3e-43 180.3 238 39.1
FAN10G0955 Fragaria x ananassa HOM05D006509 ORTHO05D008144 1.7e-38 164.1 205 48.3
Glyma.08G117902 Glycine max HOM05D006509 ORTHO05D008144 7.0e-37 158.7 131 55.0
Oeu049185.1 Olea europaea HOM05D006509 ORTHO05D008144 2.0e-36 157.1 110 68.2
Cpa.g.sc63.3 Carica papaya HOM05D006509 ORTHO05D008144 1.3e-35 154.5 121 65.3
ECA246G0117 Erigeron canadensis HOM05D006509 ORTHO05D008144 2.5e-34 150.2 109 66.1
AUR62018171 Chenopodium quinoa HOM05D006509 ORTHO05D008144 1.4e-32 144.4 112 61.6
Cc00_g35200 Coffea canephora HOM05D006509 ORTHO05D008144 9.8e-31 138.3 123 56.1
Os04g0108300 Oryza sativa ssp. japonica HOM05D006509 ORTHO05D008144 1.1e-29 134.8 140 45.0
AagrBONN_evm.TU.Sc2ySwM_362.2130 Anthoceros agrestis HOM05D006509 ORTHO05D008144 7.8e-20 102.1 162 38.3
FAN01G0805 Fragaria x ananassa HOM05D006509 ORTHO05D008144 2.1e-17 94.0 64 71.9
Oeu033605.1 Olea europaea HOM05D006509 ORTHO05D008144 2.2e-14 84.0 74 56.8
Ca_19971_v3 Cicer arietinum L. HOM05D000020 ORTHO05D000156 3.9e-11 73.2 75 50.7


User provided reference genes

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